Nuclear RNA export factor 3
UniProt
Show FASTA Format
>gi|20455187|sp|Q9H4D5.1|NXF3_HUMAN RecName: Full=Nuclear RNA export factor 3; AltName: Full=TAP-like protein 3; Short=TAPL-3
MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYT
ISPYNRKGSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVP
FVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAM
NQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPGEKCA
DRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQ
QYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDI
VDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVND
KLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 999999998988877433345777666678889999999999986324579944678888
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHM
10 20 30 40 50 60
Conf: 999886666668898998733589864333347889534358899999876713787037
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
AA: DSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPF
70 80 90 100 110 120
Conf: 843698999999985179780336989869967998278789999982148021468960
Pred: CCCCCHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCHHHHHHHHHCCCCEECCCCCC
AA: GIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEK
130 140 150 160 170 180
Conf: 122014899983100113267899999985027881134541278999986655651136
Pred: EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
AA: ISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMA
190 200 210 220 230 240
Conf: 797420000011201376221221213446788864420379986334678885523498
Pred: CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
AA: SNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSIL
250 260 270 280 290 300
Conf: 652444246895358962113345566877768888876789999999999774254688
Pred: HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
AA: ELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGD
310 320 330 340 350 360
Conf: 021542033687589840699999999532434567866012578122333202798899
Pred: HHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHH
AA: RQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDI
370 380 390 400 410 420
Conf: 999722999833699875000400476399999656985127888721367789997428
Pred: HHHHHCCCCCCCCCCCCCCEEEECCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEC
AA: VDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPG
430 440 450 460 470 480
Conf: 999808983627872489866556554468898889999999887720789
Pred: CCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
AA: SSSSLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS
490 500 510 520 530
Show Conservation Score by AL2CO
1 M -1.000 *
2 S -1.000 *
3 L -1.000 *
4 P -1.000 *
5 S -1.000 *
6 G -1.000 *
7 H -1.000 *
8 T -1.000 *
9 T -1.000 *
10 G -1.000 *
11 H -1.000 *
12 T -1.000 *
13 D -1.000 *
14 Q -1.000 *
15 V -1.000 *
16 V -1.000 *
17 Q -1.000 *
18 R -1.000 *
19 R -1.000 *
20 A -1.000 *
21 R -1.000 *
22 C -1.000 *
23 W -1.000 *
24 D -1.000 *
25 I -1.000 *
26 Y -1.000 *
27 Q -1.000 *
28 R -1.000 *
29 R -1.000 *
30 F -1.000 *
31 S -1.000 *
32 S -1.000 *
33 R -1.000 *
34 S -1.000 *
35 E -1.000 *
36 P -1.000 *
37 V -1.000 *
38 N -1.000 *
39 P -1.000 *
40 G -1.000 *
41 M -1.000 *
42 H -1.000 *
43 S -1.000 *
44 S -1.000 *
45 S -1.000 *
46 H -1.000 *
47 Q -1.000 *
48 Q -1.000 *
49 Q -1.000 *
50 D -1.000 *
51 G -1.000 *
52 D -1.000 *
53 A -1.000 *
54 A -1.000 *
55 M -1.000 *
56 H -1.000 *
57 G -1.000 *
58 A -1.000 *
59 H -1.000 *
60 M -1.000 *
61 D -1.000 *
62 S -1.000 *
63 P -1.000 *
64 V -1.000 *
65 R -1.000 *
66 Y -1.000 *
67 T -1.000 *
68 P -1.000 *
69 Y -1.000 *
70 T -1.000 *
71 I -1.000 *
72 S -1.000 *
73 P -1.000 *
74 Y -1.000 *
75 N -1.000 *
76 R -1.000 *
77 K -1.000 *
78 G -1.000 *
79 S -1.000 *
80 F -1.000 *
81 R -1.000 *
82 K -1.000 *
83 Q -1.000 *
84 D -1.000 *
85 Q -1.000 *
86 T -1.000 *
87 H -1.000 *
88 V -1.000 *
89 N -1.000 *
90 M -1.000 *
91 E -1.000 *
92 R -1.000 *
93 E -1.000 *
94 Q -1.000 *
95 K -1.000 *
96 P -1.000 *
97 P -1.000 *
98 E -1.000 *
99 R -1.000 *
100 R -1.000 *
101 M -1.000 *
102 E -0.798
103 G -1.000 *
104 N -1.000 *
105 M -1.000 *
106 P -1.000 *
107 D -1.000 *
108 G 0.269
109 T -0.320
110 L -0.475
111 G -0.459
112 S -0.584
113 W 1.729
114 F 0.691
115 K 0.555
116 I 1.145
117 T 0.161
118 V 2.486
119 P 0.569
120 F -0.130
121 G 1.320
122 I -0.384
123 K -0.088
124 Y -0.184
125 N 0.627
126 E 0.966
127 K -0.044
128 W -0.295
129 L 2.611
130 L 0.738
131 N 0.204
132 L -0.082
133 I 1.978
134 Q -0.322
135 N -0.316
136 E -0.552
137 C 0.361
138 S -0.230
139 V -0.246
140 P -0.679
141 F 1.352
142 V -0.609
143 P 0.758
144 V 0.099
145 E -0.311
146 F 0.582
147 H -0.032
148 Y -0.183
149 E -0.282
150 N 0.323
151 M -0.447
152 H -0.739
153 A 0.377
154 S -0.774
155 F 1.577
156 F 0.747
157 V 1.066
158 E 0.350
159 N 0.670
160 A -0.926
161 S -0.908
162 I 0.217
163 A 1.727
164 Y -0.819
165 A -0.256
166 L 1.317
167 K -0.298
168 N -0.079
169 V -0.009
170 S 0.174
171 G -0.442
172 K -0.313
173 I 0.367
174 W -0.742
175 D -0.234
176 E -0.651
177 D -0.118
178 N -0.125
179 E -0.810
180 K 0.112
181 I -0.007
182 S -0.887
183 I -0.160
184 F -0.953
185 V -0.646
186 N -0.591
187 P -0.456
188 A -0.431
189 G -0.943
190 I -0.498
191 P -0.450
192 H -1.142
193 F -0.425
194 V -0.542
195 H -0.898
196 R -0.932
197 E -0.333
198 L -0.712
199 K -0.587
200 S -0.763
201 E -0.609
202 K -0.699
203 V -0.113
204 E -0.378
205 Q -0.626
206 I 0.587
207 K -0.256
208 L -0.759
209 A 0.097
210 M 0.151
211 N -0.883
212 Q -0.125
213 Q 0.300
214 C -0.029
215 D -0.488
216 V -0.479
217 S -0.634
218 Q -0.337
219 E 0.209
220 A -0.596
221 L 0.370
222 D 0.387
223 I 0.657
224 Q -0.377
225 R -0.358
226 L 0.378
227 P -0.929
228 F -0.724
229 Y -0.637
230 P -0.249
231 D -0.801
232 M 0.366
233 V -0.588
234 N -0.502
235 R -0.764
236 D -0.512
237 T -0.258
238 K -0.975
239 M -0.702
240 A -0.622
241 S -0.513
242 N -0.811
243 P -0.672
244 R -0.838
245 K -0.640
246 C -0.867
247 M -0.355
248 A -0.939
249 A -0.487
250 S -0.613
251 L 0.318
252 D 0.083
253 V -0.157
254 H -0.678
255 E -0.578
256 E -0.250
257 N -0.294
258 I -0.769
259 P -0.474
260 T -0.668
261 V -0.482
262 M -0.369
263 S -0.751
264 A -0.384
265 G -0.764
266 E -0.841
267 M -0.363
268 D -0.840
269 K -0.683
270 W -0.396
271 K -0.237
272 G -0.882
273 I -0.240
274 E -0.559
275 P 1.187
276 G -0.391
277 E -0.506
278 K 0.892
279 C -0.714
280 A 0.987
281 D -0.706
282 R 0.764
283 S 1.453
284 P 0.199
285 V 0.709
286 C -0.908
287 T -0.481
288 T -0.584
289 F -0.405
290 S -0.687
291 D -0.045
292 T -0.914
293 S -0.801
294 S -0.482
295 N 0.673
296 I -0.255
297 N -0.574
298 S -0.383
299 I 1.212
300 L 0.123
301 E -0.114
302 L -0.334
303 F 1.025
304 P 0.365
305 K -0.166
306 L 1.947
307 L -0.510
308 C -0.671
309 L 1.191
310 D 1.916
311 G -0.138
312 Q -0.759
313 Q -0.650
314 S 0.405
315 P -0.742
316 R -0.219
317 A -0.412
318 T -0.686
319 L -0.762
320 C -0.677
321 G -0.350
322 T -0.430
323 E -0.497
324 A -0.726
325 H -0.979
326 K -0.865
327 R -1.029
328 L -0.365
329 P -0.514
330 T -0.455
331 C -0.701
332 K -0.530
333 G -0.477
334 S -0.648
335 F 0.165
336 F -0.394
337 G -0.434
338 S -0.190
339 E -0.305
340 M -0.553
341 L -0.143
342 K -0.444
343 N -0.660
344 L 0.297
345 V 1.029
346 L -1.003
347 Q -0.664
348 F 3.968
349 L 2.079
350 Q -0.808
351 Q -0.353
352 Y 3.851
353 Y 2.121
354 L -1.025
355 I -0.559
356 Y 2.477
357 D 4.881
358 S -0.002
359 G -0.437
360 D 0.974
361 R 1.214
362 Q -0.962
363 G -0.741
364 L 2.076
365 L -0.561
366 S -0.651
367 A 0.455
368 Y 4.936
369 H 0.282
370 D -0.193
371 E -0.209
372 A 2.475
373 C -0.482
374 F 1.766
375 S 2.713
376 L 1.498
377 S 0.845
378 I 0.504
379 P -0.257
380 F -0.487
381 N -0.801
382 P -0.538
383 E -0.796
384 D -0.874
385 S -0.828
386 A -0.935
387 P -0.667
388 S -0.613
389 S -0.922
390 F -0.117
391 C -1.090
392 K -0.912
393 F -0.139
394 F -0.606
395 K -0.499
396 D -0.772
397 S 0.804
398 R 1.483
399 N 3.143
400 I 0.468
401 K -0.713
402 I -0.283
403 L -0.700
404 K -0.171
405 D -0.162
406 P -1.103
407 Y -1.015
408 L -0.931
409 R -0.182
410 G -0.961
411 E -0.259
412 L -0.513
413 L 0.425
414 K -0.550
415 H -0.467
416 T 1.269
417 K -0.216
418 L -0.981
419 D -0.482
420 I 2.139
421 V -0.055
422 D -0.479
423 S -0.237
424 L 1.583
425 S -0.647
426 A -0.614
427 L 1.712
428 P 2.360
429 K -0.209
430 T 2.409
431 Q -0.178
432 H 3.768
433 D -0.282
434 L -0.066
435 S -0.838
436 S 0.169
437 F 0.072
438 L -0.842
439 V 0.370
440 D 0.853
441 M 0.180
442 W -0.694
443 Y -0.549
444 Q -0.746
445 T -0.032
446 E -0.332
447 W -0.716
448 M -0.346
449 L 0.746
450 C -0.280
451 F 1.326
452 S -0.246
453 V 1.534
454 N 0.216
455 G 2.965
456 V -0.540
457 F 1.501
458 K -0.659
459 E 1.528
460 V -0.807
461 E -0.448
462 G -0.463
463 Q -0.747
464 S -0.831
465 Q -0.410
466 G -0.775
467 S -0.980
468 V -0.403
469 L 0.237
470 A -0.056
471 F 2.846
472 T 0.140
473 R 2.214
474 T 0.528
475 F 1.967
476 I 1.242
477 A 1.130
478 T -0.044
479 P -0.323
480 G -0.716
481 S -0.768
482 S -0.245
483 S -0.038
484 S 0.316
485 L 0.902
486 C -0.504
487 I 3.580
488 V 0.238
489 N 2.657
490 D 3.932
491 K 0.086
492 L 1.297
493 F -0.212
494 V 2.945
495 R -0.036
496 D -0.490
497 T -0.189
498 S -0.392
499 H -0.909
500 Q -0.787
501 G -0.420
502 T -0.850
503 Q -0.361
504 S -0.661
505 A -0.468
506 L -0.931
507 F -0.877
508 T -0.376
509 L -0.080
510 V -0.372
511 P 0.278
512 T -0.222
513 A 0.122
514 F -0.606
515 S -0.037
516 S 0.028
517 S -0.134
518 V -0.483
519 P 0.281
520 A 0.183
521 F -0.241
522 S 0.450
523 Q 0.495
524 E -1.000 *
525 Q -1.000 *
526 Q -1.000 *
527 K -1.000 *
528 M -1.000 *
529 L -1.000 *
530 P -1.000 *
531 S -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 179.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MSLPSGHTTG HTDQVVQRRA RCWDIYQRRF SSRSEPVNPG MHSSSHQQQD GDAAMHGAHM
70 80 90 100 110 120
DSPVRYTPYT ISPYNRKGSF RKQDQTHVNM EREQKPPERR MEGNMPDGTL GSWFKITVPF
130 140 150 160 170 180
GIKYNEKWLL NLIQNECSVP FVPVEFHYEN MHASFFVENA SIAYALKNVS GKIWDEDNEK
190 200 210 220 230 240
ISIFVNPAGI PHFVHRELKS EKVEQIKLAM NQQCDVSQEA LDIQRLPFYP DMVNRDTKMA
250 260 270 280 290 300
SNPRKCMAAS LDVHEENIPT VMSAGEMDKW KGIEPGEKCA DRSPVCTTFS DTSSNINSIL
310 320 330 340 350 360
ELFPKLLCLD GQQSPRATLC GTEAHKRLPT CKGSFFGSEM LKNLVLQFLQ QYYLIYDSGD
370 380 390 400 410 420
RQGLLSAYHD EACFSLSIPF NPEDSAPSSF CKFFKDSRNI KILKDPYLRG ELLKHTKLDI
430 440 450 460 470 480
VDSLSALPKT QHDLSSFLVD MWYQTEWMLC FSVNGVFKEV EGQSQGSVLA FTRTFIATPG
490 500 510 520 530
SSSSLCIVND KLFVRDTSHQ GTQSALFTLV PTAFSSSVPA FSQEQQKMLP S
NXF3 is related to TAP. Both mediate RNA export. However, NXF3 lacks TAP's C-terminal domain, which directly interacts with nucleoporins. Instead, NXF3 contains a NES and depends on CRM1 pathway for its export function.
[1]. "Two closely related human nuclear export factors utilize entirely distinct export pathways"
Yang J, Bogerd HP, Wang PJ, Page DC, Cullen BR. (2001)
Mol Cell,
8:397-406
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.