Dysbindin-1 Dystrobrevin-binding protein 1 Hermansky-Pudlak syndrome 7 protein
Show FASTA Format
>gi|38604971|sp|Q96EV8.1|DTBP1_HUMAN RecName: Full=Dysbindin; AltName: Full=Dysbindin-1; AltName: Full=Dystrobrevin-binding protein 1; AltName: Full=Hermansky-Pudlak syndrome 7 protein; Short=HPS7 protein
MLETLRERLLSVQQDFTSGLKTLSDKSREAKVKSKPRTVPFLPKYSAGLELLSRYEDTWAALHRRAKDCA
SAGELVDSEVVMLSAHWEKKKTSLVELQEQLQQLPALIADLESMTANLTHLEASFEEVENNLLHLEDLCG
QCELERCKHMQSQQLENYKKNKRKELETFKAELDAEHAQKVLEMEHTQQMKLKERQKFFEEAFQQDMEQY
LSTGYLQIAERREPIGSMSSMEVNVDMLEQMDLMDISDQEALDVFLNSGGEENTVLSPALGPESSTCQNE
ITLQVPNPSELRAKPPSSSSTCTDSATRDISEGGESPVVQSDEEEVQVDTALATSHTDREATPDGGEDSD
S
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 925789999877764310246676300000035788655778887504788999999999
Pred: CHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
AA: MLETLRERLLSVQQDFTSGLKTLSDKSREAKVKSKPRTVPFLPKYSAGLELLSRYEDTWA
10 20 30 40 50 60
Conf: 999999983476655489999999999973401999999993345999999999986898
Pred: HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: ALHRRAKDCASAGELVDSEVVMLSAHWEKKKTSLVELQEQLQQLPALIADLESMTANLTH
70 80 90 100 110 120
Conf: 887799999866528976445678887775579999875655677665666544445465
Pred: HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: LEASFEEVENNLLHLEDLCGQCELERCKHMQSQQLENYKKNKRKELETFKAELDAEHAQK
130 140 150 160 170 180
Conf: 765554321447875799999956758865303732111356888876543335660001
Pred: HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHH
AA: VLEMEHTQQMKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPIGSMSSMEVNVDMLEQ
190 200 210 220 230 240
Conf: 004798976799886458999988889999999987754333589997444579999999
Pred: HCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MDLMDISDQEALDVFLNSGGEENTVLSPALGPESSTCQNEITLQVPNPSELRAKPPSSSS
250 260 270 280 290 300
Conf: 999988888899988985237754344464221235788789999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: TCTDSATRDISEGGESPVVQSDEEEVQVDTALATSHTDREATPDGGEDSDS
310 320 330 340 350
Show Conservation Score by AL2CO
1 M 4.021
2 L 2.615
3 E 0.480
4 T 0.889
5 L 1.907
6 R 2.634
7 E 1.139
8 R 1.057
9 L 2.052
10 L 0.013
11 S -0.023
12 V 1.360
13 Q 2.668
14 Q -0.068
15 D 1.047
16 F 1.582
17 T 0.827
18 S 0.364
19 G 0.491
20 L 1.162
21 K 0.136
22 T -0.193
23 L 1.133
24 S -0.016
25 D -0.321
26 K -0.517
27 S -0.468
28 R -0.835
29 E -0.312
30 A -0.381
31 K -0.681
32 V -0.933
33 K -0.561
34 S -0.797
35 K -0.425
36 P -0.928
37 R -0.861
38 T -1.485
39 V -0.581
40 P -0.725
41 F -1.249
42 L -0.568
43 P -0.023
44 K -0.257
45 Y -0.258
46 S -0.829
47 A 2.384
48 G 2.596
49 L -0.137
50 E 0.194
51 L 0.691
52 L 2.615
53 S -1.228
54 R 0.174
55 Y 2.206
56 E 1.617
57 D -0.764
58 T -0.754
59 W 2.214
60 A -0.944
61 A -0.980
62 L 1.674
63 H 1.662
64 R -0.425
65 R -0.851
66 A -0.194
67 K -0.241
68 D -0.650
69 C 0.858
70 A 0.687
71 S -0.926
72 A -0.538
73 G 1.840
74 E -0.526
75 L -0.544
76 V 0.620
77 D 1.564
78 S -0.932
79 E -0.954
80 V 1.768
81 V -1.332
82 M -1.082
83 L 0.569
84 S -1.174
85 A -0.903
86 H -0.878
87 W -0.818
88 E -0.221
89 K -0.981
90 K -0.147
91 K -1.190
92 T -0.849
93 S -0.910
94 L 0.075
95 V -1.128
96 E -0.741
97 L 1.036
98 Q -0.579
99 E -1.030
100 Q -1.030
101 L 1.914
102 Q -0.507
103 Q -0.712
104 L 1.008
105 P 0.997
106 A -0.802
107 L 0.665
108 I -0.517
109 A -0.907
110 D -0.486
111 L 1.150
112 E -0.172
113 S -0.832
114 M -0.264
115 T -0.609
116 A -1.193
117 N -0.409
118 L 0.632
119 T -1.034
120 H -0.550
121 L 1.024
122 E -0.744
123 A -1.001
124 S -1.052
125 F -0.000
126 E -0.738
127 E -0.658
128 V 0.573
129 E 1.963
130 N -1.298
131 N -1.093
132 L 1.725
133 L -1.065
134 H -1.004
135 L 0.771
136 E 0.685
137 D -0.186
138 L 0.200
139 C 0.153
140 G -0.235
141 Q -0.654
142 C -0.862
143 E 0.014
144 L 0.263
145 E 0.715
146 R -0.536
147 C -1.715
148 K 0.316
149 H -0.911
150 M -1.556
151 Q 0.044
152 S -1.412
153 Q -1.340
154 Q -0.232
155 L 0.159
156 E -0.968
157 N -1.130
158 Y 0.031
159 K -0.544
160 K -0.351
161 N -0.846
162 K 0.871
163 R -0.739
164 K -0.950
165 E 0.265
166 L -0.141
167 E -0.367
168 T -1.320
169 F -0.503
170 K 0.067
171 A -0.656
172 E -0.958
173 L 0.547
174 D -0.544
175 A -1.327
176 E -0.445
177 H 0.905
178 A -1.194
179 Q -0.251
180 K -0.441
181 V -0.229
182 L -0.886
183 E -0.509
184 M -1.226
185 E 1.457
186 H -1.195
187 T -0.995
188 Q -0.127
189 Q -0.309
190 M -0.908
191 K -0.708
192 L 0.803
193 K 0.471
194 E 1.261
195 R 1.116
196 Q 1.780
197 K 1.054
198 F -0.469
199 F 0.816
200 E 0.430
201 E 0.338
202 A 1.289
203 F 1.282
204 Q -0.588
205 Q -1.199
206 D 1.561
207 M 1.042
208 E -0.159
209 Q -1.051
210 Y 1.964
211 L 1.127
212 S -0.369
213 T -0.413
214 G 1.472
215 Y -1.271
216 L 0.715
217 Q -0.175
218 I -0.717
219 A -0.886
220 E -0.656
221 R -0.590
222 R -1.082
223 E -0.898
224 P -0.435
225 I -1.125
226 G -0.400
227 S -0.246
228 M -0.692
229 S -0.186
230 S 0.030
231 M -0.765
232 E 0.231
233 V -0.534
234 N -0.758
235 V 0.169
236 D 0.104
237 M -0.454
238 L 0.839
239 E 0.592
240 Q -0.217
241 M 0.155
242 D 0.521
243 L 0.311
244 M -0.888
245 D 1.213
246 I -0.502
247 S -0.311
248 D 1.052
249 Q -0.119
250 E -0.056
251 A -0.028
252 L 2.332
253 D 1.556
254 V 0.253
255 F 3.412
256 L 2.606
257 N -0.328
258 S -0.008
259 G -0.424
260 G 0.207
261 E 0.324
262 E -0.038
263 N -0.469
264 T -0.410
265 V -0.818
266 L -0.942
267 S -0.048
268 P 0.454
269 A -0.831
270 L -0.105
271 G 0.379
272 P -0.684
273 E 1.020
274 S -1.096
275 S -0.591
276 T -1.069
277 C -1.061
278 Q -0.700
279 N -0.635
280 E 0.479
281 I -0.323
282 T -0.650
283 L -0.190
284 Q -0.490
285 V 0.448
286 P 0.966
287 N -0.900
288 P -0.971
289 S -0.265
290 E -0.822
291 L -1.159
292 R -0.650
293 A -1.002
294 K -0.336
295 P -1.213
296 P -0.190
297 S 0.606
298 S -0.821
299 S -0.282
300 S -0.150
301 T -0.804
302 C -0.444
303 T 0.396
304 D -0.511
305 S -0.486
306 A -0.766
307 T -0.198
308 R -0.457
309 D -0.216
310 I -0.493
311 S -0.005
312 E -0.251
313 G -0.179
314 G 0.041
315 E 1.141
316 S -0.688
317 P 2.380
318 V 0.875
319 V 1.544
320 Q 0.804
321 S 1.109
322 D 1.914
323 E 1.194
324 E 2.468
325 E 0.746
326 V 1.036
327 Q 0.251
328 V 0.696
329 D 1.570
330 T 0.259
331 A 0.108
332 L 2.417
333 A -0.194
334 T 0.680
335 S 0.047
336 H -0.855
337 T -0.045
338 D 0.241
339 R -1.000 *
340 E -1.000 *
341 A -1.000 *
342 T -1.000 *
343 P -1.000 *
344 D -1.000 *
345 G -1.000 *
346 G -1.000 *
347 E -1.000 *
348 D -1.000 *
349 S -1.000 *
350 D -1.000 *
351 S -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 180.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MLETLRERLL SVQQDFTSGL KTLSDKSREA KVKSKPRTVP FLPKYSAGLE LLSRYEDTWA
70 80 90 100 110 120
ALHRRAKDCA SAGELVDSEV VMLSAHWEKK KTSLVELQEQ LQQLPALIAD LESMTANLTH
130 140 150 160 170 180
LEASFEEVEN NLLHLEDLCG QCELERCKHM QSQQLENYKK NKRKELETFK AELDAEHAQK
190 200 210 220 230 240
VLEMEHTQQM KLKERQKFFE EAFQQDMEQY LSTGYLQIAE RREPIGSMSS MEVNVDMLEQ
250 260 270 280 290 300
MDLMDISDQE ALDVFLNSGG EENTVLSPAL GPESSTCQNE ITLQVPNPSE LRAKPPSSSS
310 320 330 340 350
TCTDSATRDI SEGGESPVVQ SDEEEVQVDT ALATSHTDRE ATPDGGEDSD S
Dysbindin-1 is a candidate genetic factor for schizophrenia. Fei et al. demonstrated that it is a nucleocytoplasmic shuttling protein. Its export is CRM1 dependent. When in the nucleus, Dysbindin-1 up-regulates the expression of synapsin I gene. No classical NLS was detected by the authors.
[1]. "Nucleocytoplasmic Shuttling of Dysbindin-1, a Schizophrenia-related Protein, Regulates Synapsin I Expression"
Fei E, Ma X, Zhu C, Xue T, Yan J, Xu Y, Zhou J, Wang G. (2010)
J Biol Chem,
285:38630-40
PubMed
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