Show FASTA Format
>gi|81924369|sp|O92398|O92398_NPVBM BRO-a
MAQVKIGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYT
PAPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLPYAVELQAWLLEEVIPQVLCTGKYAPAVKMDTNY
GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMADIAQDVIAKP
NNPQLLHSLAVCALGGEKYAFLRAQKRSLNRSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAK
HNKITLLQNLTREQLIDAVQSSMTERQIARLNNNFNL
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 974000002318984038999984795201531878888099994579984288476442
Pred: CCCCEEEEEEECCCCEEEEEEEEECCCEEEEECHHHHHHHCCCCHHHHHHHCCCCCCCCC
AA: MAQVKIGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTT
10 20 30 40 50 60
Conf: 224799889999998532489889878616839135899988189984278766652110
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCCCCHHHHHHHHHHCC
AA: YSESGSIPYTPAPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLPYAVELQAWLLEEV
70 80 90 100 110 120
Conf: 100002476479876678700399999999999999999907899999999999660599
Pred: CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: IPQVLCTGKYAPAVKMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQ
130 140 150 160 170 180
Conf: 999999999999999877899863453156885110279998529967898628865311
Pred: HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCEE
AA: ANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSLAVCALGGEKYAFLRAQKRSLN
190 200 210 220 230 240
Conf: 000103897468875267760222367643078200000354044234014999999999
Pred: EECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHH
AA: RSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQ
250 260 270 280 290 300
Conf: 75429999986303899
Pred: HHHHHHHHHHHHCCCCC
AA: SSMTERQIARLNNNFNL
310
Show Conservation Score by AL2CO
1 M -1.000 *
2 A -1.000 *
3 Q -1.000 *
4 V -1.000 *
5 K -1.000 *
6 I -1.000 *
7 G -1.000 *
8 E -1.000 *
9 F -1.000 *
10 K -0.026
11 F 1.329
12 G -0.220
13 E -0.385
14 D -0.594
15 T -0.727
16 F -0.424
17 T -0.265
18 L -0.094
19 R 0.086
20 Y -0.493
21 V 0.006
22 L 0.217
23 E -0.625
24 Q -0.688
25 G -0.609
26 N -0.198
27 L -0.272
28 Q 0.048
29 V -0.375
30 K 0.121
31 F 1.190
32 V -0.388
33 A 3.196
34 K -0.114
35 D 0.827
36 I 1.586
37 A 2.111
38 S -0.314
39 S -0.192
40 L 3.490
41 K 0.794
42 Y 2.298
43 V -0.370
44 N 0.043
45 C -0.538
46 K -0.523
47 Q -0.143
48 A 0.832
49 V 1.352
50 I -0.675
51 V -0.179
52 N 0.777
53 V 1.581
54 D 0.119
55 K -0.615
56 K -0.579
57 Y -0.460
58 K 0.577
59 T -0.149
60 T -0.728
61 Y -0.082
62 S -0.371
63 E -0.150
64 S -0.730
65 G -0.832
66 S -0.801
67 I -0.790
68 P -0.695
69 Y -1.008
70 T -0.933
71 P -0.852
72 A -0.765
73 P -0.989
74 D -0.718
75 N -0.636
76 V -0.754
77 V -0.972
78 K -0.775
79 Q -0.790
80 G -1.036
81 D -0.703
82 P -0.478
83 L -0.591
84 Y -0.644
85 L -0.479
86 Q -0.686
87 P -0.008
88 H -0.558
89 T 0.070
90 V -0.312
91 L 0.623
92 I 3.059
93 T 0.741
94 K 1.195
95 E 1.072
96 G 3.205
97 V 2.260
98 I 1.706
99 Q 0.367
100 L 3.144
101 I 1.484
102 M 0.193
103 K 0.098
104 S 4.122
105 K 0.199
106 L 1.343
107 P 0.790
108 Y -0.259
109 A 3.033
110 V 0.526
111 E 0.040
112 L 2.229
113 Q 1.205
114 A 0.239
115 W 2.264
116 L 1.620
117 L 0.042
118 E 0.415
119 E 1.172
120 V 3.419
121 I 2.969
122 P 2.691
123 Q 0.238
124 V 1.906
125 L 0.684
126 C 0.593
127 T -0.091
128 G 2.698
129 K -0.389
130 Y 1.874
131 A -0.163
132 P -0.246
133 A -0.606
134 V -0.734
135 K -0.801
136 M -0.799
137 D -1.014
138 T -0.490
139 N -0.905
140 Y -0.802
141 G -0.792
142 V -0.888
143 I -0.561
144 E -0.557
145 E -0.961
146 L -0.747
147 N -0.717
148 K -0.461
149 K -0.612
150 L -0.330
151 A -0.584
152 F -0.843
153 A -0.678
154 S -0.590
155 E -0.654
156 S -0.715
157 L -0.363
158 A -0.624
159 E -0.447
160 A -0.697
161 N -0.376
162 E -0.654
163 K -0.630
164 I -0.283
165 I -0.793
166 H -0.864
167 F -0.705
168 A -0.649
169 N -0.652
170 A -0.843
171 L -0.455
172 V -0.402
173 T -0.688
174 A -0.779
175 N -0.624
176 A -0.508
177 G -0.665
178 L -0.257
179 V -0.771
180 Q -0.519
181 A -1.005
182 N -0.491
183 T -0.474
184 M -0.502
185 L -0.686
186 N -0.671
187 E -0.617
188 A -0.597
189 R -0.523
190 R -0.712
191 E -0.683
192 T -0.809
193 A -0.477
194 Q -0.785
195 L -0.202
196 A -0.499
197 N -0.530
198 R 0.895
199 M 0.068
200 A -0.473
201 D -0.124
202 I -0.755
203 A -0.470
204 Q -0.071
205 D -0.087
206 V -0.629
207 I 0.037
208 A -0.915
209 K -0.246
210 P -0.510
211 N -0.202
212 N -0.277
213 P -0.453
214 Q -0.519
215 L -0.180
216 L -0.880
217 H 0.030
218 S -0.486
219 L 0.327
220 A -0.454
221 V 0.000
222 C -0.035
223 A -0.174
224 L -0.275
225 G -0.252
226 G -0.267
227 E 0.449
228 K -0.110
229 Y 0.176
230 A 0.121
231 F -0.296
232 L -0.489
233 R 0.082
234 A 0.179
235 Q 0.870
236 K 0.475
237 R -0.212
238 S -0.354
239 L 0.485
240 N -0.037
241 R 0.457
242 S 0.130
243 I -1.000 *
244 K -1.000 *
245 R 0.582
246 L 0.368
247 G -1.000 *
248 S -1.000 *
249 S -1.000 *
250 D -1.000 *
251 V -1.000 *
252 V -1.000 *
253 F -1.000 *
254 S -1.000 *
255 S -1.000 *
256 D -1.000 *
257 Y -1.000 *
258 V -1.000 *
259 P -1.000 *
260 N -1.000 *
261 A -1.000 *
262 M -1.000 *
263 N -1.000 *
264 V -1.000 *
265 L -1.000 *
266 N -1.000 *
267 K -1.000 *
268 V -1.000 *
269 K -1.000 *
270 E -1.000 *
271 T -1.000 *
272 L -1.000 *
273 P -1.000 *
274 R -1.000 *
275 N -1.000 *
276 Q -1.000 *
277 Y -1.000 *
278 K -1.000 *
279 A -1.000 *
280 K -1.000 *
281 H -1.000 *
282 N -1.000 *
283 K -1.000 *
284 I -1.000 *
285 T -1.000 *
286 L -1.000 *
287 L -1.000 *
288 Q -1.000 *
289 N -1.000 *
290 L -1.000 *
291 T -1.000 *
292 R -1.000 *
293 E -1.000 *
294 Q -1.000 *
295 L -1.000 *
296 I -1.000 *
297 D -1.000 *
298 A -1.000 *
299 V -1.000 *
300 Q -1.000 *
301 S -1.000 *
302 S -1.000 *
303 M -1.000 *
304 T -1.000 *
305 E -1.000 *
306 R -1.000 *
307 Q -1.000 *
308 I -1.000 *
309 A -1.000 *
310 R -1.000 *
311 L -1.000 *
312 N -1.000 *
313 N -1.000 *
314 N -1.000 *
315 F -1.000 *
316 N -1.000 *
317 L -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 184.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MAQVKIGEFK FGEDTFTLRY VLEQGNLQVK FVAKDIASSL KYVNCKQAVI VNVDKKYKTT
70 80 90 100 110 120
YSESGSIPYT PAPDNVVKQG DPLYLQPHTV LITKEGVIQL IMKSKLPYAV ELQAWLLEEV
130 140 150 160 170 180
IPQVLCTGKY APAVKMDTNY GVIEELNKKL AFASESLAEA NEKIIHFANA LVTANAGLVQ
190 200 210 220 230 240
ANTMLNEARR ETAQLANRMA DIAQDVIAKP NNPQLLHSLA VCALGGEKYA FLRAQKRSLN
250 260 270 280 290 300
RSIKRLGSSD VVFSSDYVPN AMNVLNKVKE TLPRNQYKAK HNKITLLQNL TREQLIDAVQ
310
SSMTERQIAR LNNNFNL
The BRO proteins are nuclear during early stage of virus infection but distributes to the cytoplasm later. Kang et al. proposed that they shuttle between the nucleus and the cytoplasm. The export is mediated by a classical NES. However, NES-mutant BRO-D can still be exported in infected cells, also in CRM1 pathway, maybe compensated by other proteins.
[1]. "The BRO proteins of Bombyx mori nucleopolyhedrovirus are nucleocytoplasmic shuttling proteins that utilize the CRM1-mediated nuclear export pathway."
Kang W, Kurihara M, Matsumoto S (2006)
Virology,
350:184-91
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.