Show FASTA Format
>gi|30316344|sp|O15457.2|MSH4_HUMAN RecName: Full=MutS protein homolog 4; Short=hMSH4
MLRPEISSTSPSAPAVSPSSGETRSPQGPRYNFGLQETPQSRPSVQVVSASTCPGTSGAAGDRSSSSSSL
PCPAPNSRPAQGSYFGNKRAYAENTVASNFTFGASSSSARDTNYPQTLKTPLSTGNPQRSGYKSWTPQVG
YSASSSSAISAHSPSVIVAVVEGRGLARGEIGMASIDLKNPQIILSQFADNTTYAKVITKLKILSPLEII
MSNTACAVGNSTKLFTLITENFKNVNFTTIQRKYFNETKGLEYIEQLCIAEFSTVLMEVQSKYYCLAAVA
ALLKYVEFIQNSVYAPKSLKICFQGSEQTAMIDSSSAQNLELLINNQDYRNNHTLFGVLNYTKTPGGSRR
LRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVISRFLDTEQLLSVLVQIPKQDTVNAAESKITN
LIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSLEDKRFGIILEKIKTVINDDARYMKGCLNMRTQKCYAV
RSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLPLRTSFSSARGFFIQMTTDCIALPSDQLPSEFIKI
SKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSFAHAC
TLSDYVRPEFTDTLAIKQGWHPILEKISAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQIALCQIMA
QIGSYVPAEYSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEG
IGICYAVCEYLLSLKAFTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRNKEAILYTYKLSKGLTEE
KNYGLKAAEVSSLPPSIVLDAKEITTQITRQILQNQRSTPEMERQRAVYHLATRLVQTARNSQLDPDSLR
IYLSNLKKKYKEDFPRTEQVPEKTEE
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 999988888999998899988989999998888887788989973312234699998876
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MLRPEISSTSPSAPAVSPSSGETRSPQGPRYNFGLQETPQSRPSVQVVSASTCPGTSGAA
10 20 30 40 50 60
Conf: 799999998999999999999999865200000000136325325210048799876688
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCC
AA: GDRSSSSSSLPCPAPNSRPAQGSYFGNKRAYAENTVASNFTFGASSSSARDTNYPQTLKT
70 80 90 100 110 120
Conf: 888898888704630899887677765335789938999993678788918999982688
Pred: CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCC
AA: PLSTGNPQRSGYKSWTPQVGYSASSSSAISAHSPSVIVAVVEGRGLARGEIGMASIDLKN
130 140 150 160 170 180
Conf: 839999846970499999875200862599848843258843678899851477400003
Pred: CCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECC
AA: PQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACAVGNSTKLFTLITENFKNVNFTTI
190 200 210 220 230 240
Conf: 555688045499999974321021022015754899999999999999960125666201
Pred: CCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCE
AA: QRKYFNETKGLEYIEQLCIAEFSTVLMEVQSKYYCLAAVAALLKYVEFIQNSVYAPKSLK
250 260 270 280 290 300
Conf: 576617891661387774244432146898777401111547894120477853106689
Pred: EEEECCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
AA: ICFQGSEQTAMIDSSSAQNLELLINNQDYRNNHTLFGVLNYTKTPGGSRRLRSNILEPLV
310 320 330 340 350 360
Conf: 989898679999999849876999999732588867885742034566640122026307
Pred: CHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHCCCHHH
AA: DIETINMRLDCVQELLQDEELFFGLQSVISRFLDTEQLLSVLVQIPKQDTVNAAESKITN
370 380 390 400 410 420
Conf: 999999964329899986219948999999614962078899999766416973324886
Pred: HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
AA: LIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSLEDKRFGIILEKIKTVINDDARYMKGCL
430 440 450 460 470 480
Conf: 422024337617976039999998123699999999998433199848825255149999
Pred: CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEE
AA: NMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLGEKYSLPLRTSFSSARGFFIQ
490 500 510 520 530 540
Conf: 935887899999981120025406908874476898889979899999997799999999
Pred: EECCCCCCCCCCCCCCCHHEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: MTTDCIALPSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLL
550 560 570 580 590 600
Conf: 999986899999999999998899899983309966776698020035788503201599
Pred: HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCEEEECCCC
AA: SEIYEHIHCLYKLSDTVSMLDMLLSFAHACTLSDYVRPEFTDTLAIKQGWHPILEKISAE
610 620 630 640 650 660
Conf: 997797445899747997489999725899999999999500863258867754410122
Pred: CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
AA: KPIANNTYVTEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAKQIF
670 680 690 700 710 720
Conf: 135466544237464589849999998418998537764158799950448999999999
Pred: HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
AA: TRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEY
730 740 750 760 770 780
Conf: 980698378723320467520018990588999996414789998528999604688866
Pred: HHCCCCEEEEECCCHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCC
AA: LLSLKAFTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRNKEAILYTYKLSKGLTEE
790 800 810 820 830 840
Conf: 521256766069997889999999999999987502689799999986449999998874
Pred: CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
AA: KNYGLKAAEVSSLPPSIVLDAKEITTQITRQILQNQRSTPEMERQRAVYHLATRLVQTAR
850 860 870 880 890 900
Conf: 599998999999999999999652001389884469
Pred: CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
AA: NSQLDPDSLRIYLSNLKKKYKEDFPRTEQVPEKTEE
910 920 930
Show Conservation Score by AL2CO
1 M -1.000 *
2 L -1.000 *
3 R -1.000 *
4 P -1.000 *
5 E -1.000 *
6 I -1.000 *
7 S -1.000 *
8 S -1.000 *
9 T -1.000 *
10 S -1.000 *
11 P -1.000 *
12 S -1.000 *
13 A -1.000 *
14 P -1.000 *
15 A -1.000 *
16 V -1.000 *
17 S -1.000 *
18 P -1.000 *
19 S -1.000 *
20 S -1.000 *
21 G -1.000 *
22 E -1.000 *
23 T -1.000 *
24 R -1.000 *
25 S -1.000 *
26 P -1.000 *
27 Q -1.000 *
28 G -1.000 *
29 P -1.000 *
30 R -1.000 *
31 Y -1.000 *
32 N -1.000 *
33 F -1.000 *
34 G -1.000 *
35 L -1.000 *
36 Q -1.000 *
37 E -1.000 *
38 T -1.000 *
39 P -1.000 *
40 Q -1.000 *
41 S -1.000 *
42 R -1.000 *
43 P -1.000 *
44 S -1.000 *
45 V -1.000 *
46 Q -1.000 *
47 V -1.000 *
48 V -1.000 *
49 S -1.000 *
50 A -1.000 *
51 S -1.000 *
52 T -1.000 *
53 C -1.000 *
54 P -1.000 *
55 G -1.000 *
56 T -1.000 *
57 S -1.000 *
58 G -1.000 *
59 A -1.000 *
60 A -1.000 *
61 G -1.000 *
62 D -1.000 *
63 R -1.000 *
64 S -1.000 *
65 S -1.000 *
66 S -1.000 *
67 S -1.000 *
68 S -1.000 *
69 S -1.000 *
70 L -1.000 *
71 P -1.000 *
72 C -1.000 *
73 P -1.000 *
74 A -1.000 *
75 P -1.000 *
76 N -0.458
77 S 0.025
78 R -0.438
79 P 0.444
80 A 0.239
81 Q 0.049
82 G 0.394
83 S 0.047
84 Y 0.723
85 F -0.174
86 G 0.205
87 N 0.013
88 K -1.000 *
89 R -1.000 *
90 A -1.000 *
91 Y -1.000 *
92 A -0.017
93 E -0.403
94 N -0.378
95 T -0.130
96 V 0.012
97 A -0.743
98 S -0.445
99 N 0.097
100 F 0.063
101 T -0.680
102 F -0.952
103 G 0.484
104 A -0.642
105 S -0.195
106 S 0.312
107 S 0.472
108 S 0.248
109 A -0.175
110 R 0.004
111 D -0.262
112 T -0.355
113 N 0.219
114 Y -0.197
115 P 0.576
116 Q -0.634
117 T -0.634
118 L -0.392
119 K 0.980
120 T -0.165
121 P 0.496
122 L -0.171
123 S -1.000 *
124 T -1.000 *
125 G 0.439
126 N -0.249
127 P 0.228
128 Q -0.293
129 R 0.332
130 S -0.369
131 G 0.069
132 Y -0.467
133 K 0.211
134 S 0.038
135 W -0.439
136 T 1.235
137 P 1.312
138 Q -0.193
139 V -0.074
140 G -1.000 *
141 Y -1.000 *
142 S -1.000 *
143 A -0.333
144 S -0.294
145 S -0.008
146 S -0.789
147 S -0.726
148 A -0.535
149 I -0.223
150 S -0.581
151 A -0.207
152 H -0.649
153 S -0.834
154 P 0.049
155 S 0.553
156 V 0.088
157 I 1.069
158 V -0.282
159 A 0.263
160 V 0.466
161 V -0.439
162 E -1.045
163 G -0.631
164 R -1.000 *
165 G -1.000 *
166 L -1.204
167 A -1.151
168 R -0.917
169 G -1.089
170 E -0.979
171 I -0.245
172 G 1.427
173 M 0.094
174 A 0.655
175 S -0.615
176 I -0.062
177 D 1.571
178 L 0.092
179 K -0.079
180 N 0.034
181 P 1.431
182 Q -0.478
183 I 0.030
184 I -1.128
185 L -0.175
186 S -0.513
187 Q -0.226
188 F -0.482
189 A -1.015
190 D -0.867
191 N -1.066
192 T -0.995
193 T -0.925
194 Y -1.183
195 A -0.938
196 K -1.077
197 V 0.068
198 I -1.153
199 T -0.168
200 K -0.275
201 L 0.601
202 K -1.014
203 I -0.276
204 L -0.377
205 S -0.813
206 P 2.006
207 L -0.297
208 E 2.335
209 I 0.291
210 I 0.699
211 M -0.458
212 S -0.624
213 N -0.665
214 T -0.869
215 A -1.008
216 C -1.156
217 A -1.215
218 V -1.198
219 G -0.998
220 N -1.155
221 S -1.208
222 T -1.090
223 K -0.948
224 L -1.051
225 F -1.091
226 T -0.967
227 L -1.141
228 I -0.724
229 T -1.006
230 E -0.891
231 N -1.108
232 F -1.163
233 K -1.185
234 N -1.148
235 V -1.156
236 N -1.203
237 F -1.149
238 T -0.936
239 T -1.143
240 I -1.108
241 Q -0.802
242 R -0.758
243 K -1.037
244 Y -1.146
245 F -0.864
246 N -1.000
247 E -1.096
248 T -1.000
249 K -1.103
250 G -0.999
251 L -1.100
252 E -0.847
253 Y -1.110
254 I -0.720
255 E -0.997
256 Q -0.769
257 L -0.941
258 C -0.938
259 I -1.090
260 A -1.199
261 E -0.816
262 F -0.713
263 S -0.779
264 T -0.797
265 V -1.058
266 L -0.948
267 M -0.850
268 E -0.770
269 V -0.825
270 Q -1.057
271 S -0.984
272 K -1.062
273 Y -1.074
274 Y -1.205
275 C -0.359
276 L -0.425
277 A -1.024
278 A 0.569
279 V 0.078
280 A 0.698
281 A -0.489
282 L 0.283
283 L 0.386
284 K -1.053
285 Y 1.791
286 V 0.361
287 E -0.905
288 F -0.598
289 I 0.191
290 Q 0.536
291 N -0.042
292 S -0.833
293 V -1.003
294 Y -0.303
295 A -0.787
296 P -0.361
297 K -0.688
298 S -0.439
299 L -0.913
300 K -0.861
301 I -0.457
302 C -1.087
303 F -1.006
304 Q -0.812
305 G -1.050
306 S -1.076
307 E -0.661
308 Q -0.668
309 T -0.705
310 A 0.166
311 M -1.020
312 I 1.011
313 D 1.464
314 S -0.959
315 S -0.532
316 S 1.080
317 A -0.128
318 Q 0.026
319 N 1.574
320 L 2.336
321 E 2.708
322 L 1.334
323 L -0.167
324 I -0.968
325 N 0.290
326 N -0.509
327 Q -0.687
328 D -0.432
329 Y -0.577
330 R -1.027
331 N -0.885
332 N -0.637
333 H -0.407
334 T 1.556
335 L 1.798
336 F -0.052
337 G -0.407
338 V 0.538
339 L 0.844
340 N 1.821
341 Y -0.847
342 T 0.909
343 K -0.818
344 T 2.036
345 P 0.511
346 G 0.799
347 G 2.150
348 S 0.029
349 R 2.708
350 R -0.255
351 L 0.729
352 R 0.115
353 S -0.439
354 N -0.506
355 I 0.699
356 L -0.506
357 E -0.799
358 P 2.708
359 L 0.170
360 V -0.507
361 D -0.765
362 I -1.072
363 E -1.044
364 T -0.902
365 I 0.917
366 N -0.987
367 M -0.972
368 R 2.708
369 L 0.491
370 D -0.664
371 C -0.637
372 V 1.164
373 Q -0.696
374 E -0.944
375 L 0.428
376 L -0.836
377 Q -0.849
378 D -0.779
379 E -1.200
380 E -1.092
381 L -1.141
382 F -0.966
383 F -1.148
384 G -0.844
385 L 0.103
386 Q -0.975
387 S -0.594
388 V -1.135
389 I 0.777
390 S -0.746
391 R -0.802
392 F 0.208
393 L -0.343
394 D 2.708
395 T -0.094
396 E 0.893
397 Q 1.100
398 L 0.788
399 L -0.146
400 S 0.272
401 V 0.076
402 L 0.165
403 V -0.164
404 Q -1.000 *
405 I -1.000 *
406 P -1.000 *
407 K -1.000 *
408 Q -1.000 *
409 D -1.000 *
410 T -1.000 *
411 V -1.000 *
412 N -1.000 *
413 A -0.012
414 A -0.357
415 E -0.259
416 S -0.048
417 K 0.046
418 I 0.383
419 T 0.492
420 N 0.266
421 L 0.317
422 I -0.543
423 Y -0.573
424 L 0.648
425 K -0.326
426 H -1.025
427 T 0.181
428 L 0.178
429 E -0.933
430 L -1.019
431 V 0.108
432 D -0.146
433 P -1.004
434 L 0.522
435 K -0.913
436 I -1.114
437 A -1.121
438 M -0.274
439 K -0.980
440 N -0.999
441 C -1.089
442 N -0.967
443 T -0.926
444 P -0.955
445 L -1.123
446 L -0.592
447 R -1.106
448 A -1.077
449 Y -0.827
450 Y -1.228
451 G -0.954
452 S -0.956
453 L -0.534
454 E -0.843
455 D -1.178
456 K -0.996
457 R -0.769
458 F -0.779
459 G -1.112
460 I -0.840
461 I -0.413
462 L -0.974
463 E -0.628
464 K -0.840
465 I 0.155
466 K -1.023
467 T -0.807
468 V -0.293
469 I -0.258
470 N -0.874
471 D -0.220
472 D -0.299
473 A -1.000 *
474 R -0.784
475 Y -0.359
476 M 0.016
477 K -1.000 *
478 G -1.000 *
479 C -1.000 *
480 L 0.541
481 N 0.041
482 M -0.387
483 R -0.324
484 T -0.413
485 Q 0.333
486 K 0.664
487 C 0.497
488 Y -0.258
489 A 0.127
490 V 0.718
491 R 0.221
492 S -0.839
493 N 0.431
494 I 0.215
495 N 0.138
496 E -0.725
497 F -0.631
498 L 0.399
499 D 1.993
500 I -0.803
501 A -0.234
502 R -0.249
503 R -1.001
504 T -0.145
505 Y -0.745
506 T -0.856
507 E -0.253
508 I 0.075
509 V -0.570
510 D -0.500
511 D -0.402
512 I 0.916
513 A -0.913
514 G -0.561
515 M 0.449
516 I -0.002
517 S -0.785
518 Q -0.458
519 L 0.480
520 G 0.314
521 E -0.335
522 K -0.483
523 Y -0.173
524 S 0.143
525 L 0.768
526 P -0.116
527 L 1.660
528 R 1.363
529 T 0.701
530 S 0.174
531 F 1.521
532 S 1.643
533 S -0.031
534 A 0.243
535 R 0.402
536 G 2.336
537 F 1.559
538 F 0.611
539 I 0.424
540 Q 0.625
541 M 0.559
542 T -0.147
543 T -0.453
544 D -0.336
545 C -0.668
546 I -1.000 *
547 A -1.000 *
548 L -1.000 *
549 P -1.000 *
550 S -0.598
551 D -0.383
552 Q -0.720
553 L 0.329
554 P 2.327
555 S -0.778
556 E -0.636
557 F 0.780
558 I 0.026
559 K 0.758
560 I 0.701
561 S 0.640
562 K 1.097
563 V -0.042
564 K 0.408
565 N 0.707
566 S -0.331
567 Y 0.495
568 S 0.504
569 F 1.261
570 T 0.257
571 S 0.231
572 A -0.503
573 D 0.414
574 L 1.850
575 I -0.003
576 K -0.465
577 M -0.418
578 N 0.646
579 E -0.391
580 R -0.533
581 C 0.452
582 Q -0.449
583 E -0.202
584 S 1.560
585 L -0.292
586 R -0.176
587 E 0.075
588 I -0.258
589 Y -0.886
590 H -0.829
591 M 0.098
592 T 0.784
593 Y -0.360
594 M -0.996
595 I -0.358
596 V 0.279
597 C -0.861
598 K -0.594
599 L 0.739
600 L -0.087
601 S -0.522
602 E -1.109
603 I 0.224
604 Y -0.962
605 E -0.907
606 H -0.715
607 I -0.206
608 H -1.072
609 C -0.807
610 L 0.436
611 Y -0.256
612 K -0.965
613 L -0.598
614 S 1.012
615 D -0.982
616 T -0.909
617 V 0.516
618 S 0.872
619 M -1.088
620 L 0.233
621 D 2.331
622 M 0.071
623 L 0.304
624 L -0.696
625 S 0.411
626 F 1.035
627 A 1.137
628 H -0.965
629 A -0.272
630 C 0.741
631 T -1.075
632 L -0.856
633 S -0.680
634 D -0.318
635 Y 0.731
636 V -0.563
637 R -0.217
638 P 2.326
639 E -0.823
640 F -0.322
641 T -0.730
642 D -0.413
643 T -0.717
644 L 0.001
645 A -0.988
646 I 1.130
647 K -0.798
648 Q -0.385
649 G 0.940
650 W 1.321
651 H 2.326
652 P 1.221
653 I 1.359
654 L 0.941
655 E 1.150
656 K -0.685
657 I -0.456
658 S -0.831
659 A -0.955
660 E -0.648
661 K -0.978
662 P 0.758
663 I 0.826
664 A -0.293
665 N 1.992
666 N 0.577
667 T -0.348
668 Y -1.072
669 V -0.415
670 T -0.545
671 E -0.819
672 G -0.535
673 S -0.669
674 N -0.501
675 F 0.087
676 L -0.710
677 I 0.915
678 I 1.336
679 T 2.326
680 G 2.708
681 P 1.982
682 N 2.708
683 M 2.708
684 S 1.248
685 G 2.708
686 K 2.708
687 S 2.708
688 T 1.316
689 Y 0.888
690 L 1.057
691 K 1.708
692 Q 2.167
693 I 0.150
694 A 1.397
695 L 1.055
696 C 0.221
697 Q 0.215
698 I 0.641
699 M 1.451
700 A 1.145
701 Q 0.369
702 I 0.117
703 G 2.708
704 S 0.988
705 Y 0.832
706 V 1.857
707 P 2.708
708 A 1.646
709 E -0.279
710 Y -0.788
711 S 0.480
712 S -0.833
713 F 0.400
714 R 0.131
715 I -0.348
716 A 0.251
717 K 1.056
718 Q 0.239
719 I 1.534
720 F 2.145
721 T 1.408
722 R 2.708
723 I 1.376
724 S 2.072
725 T 0.688
726 D 0.120
727 D 2.006
728 D 0.564
729 I 1.139
730 E -0.128
731 T -0.259
732 N 1.529
733 S 0.060
734 S 2.708
735 T 2.179
736 F 2.708
737 M 1.158
738 K 0.518
739 E 2.708
740 M 2.708
741 K -0.686
742 E 2.335
743 I 0.127
744 A 0.447
745 Y -0.581
746 I 2.263
747 L 0.869
748 H -0.398
749 N -0.256
750 A 0.474
751 N 1.146
752 D -0.657
753 K -0.359
754 S 2.708
755 L 1.385
756 I 1.078
757 L 1.279
758 I 0.548
759 D 2.708
760 E 2.708
761 L 1.263
762 G 2.708
763 R 2.708
764 G 2.337
765 T 2.708
766 N 1.221
767 T 0.660
768 E 0.335
769 E 1.865
770 G 2.335
771 I 0.692
772 G 1.304
773 I 1.571
774 C 1.636
775 Y 0.050
776 A 1.833
777 V -0.005
778 C 0.037
779 E 0.119
780 Y -0.584
781 L 0.635
782 L -0.673
783 S -0.445
784 L -0.546
785 K -0.166
786 A 0.584
787 F -0.064
788 T 1.036
789 L 1.032
790 F 2.233
791 A 1.368
792 T 2.708
793 H 2.708
794 F 1.861
795 L 0.637
796 E 1.234
797 L 1.745
798 C 0.137
799 H -0.873
800 I 1.120
801 D -0.223
802 A -0.684
803 L -0.887
804 Y -0.899
805 P -0.726
806 N -0.717
807 V 0.157
808 E -0.787
809 N 1.644
810 M -0.291
811 H -0.151
812 F 0.425
813 E -0.318
814 V 0.807
815 Q -0.338
816 H 0.210
817 V -1.000 *
818 K -1.000 *
819 N -1.000 *
820 T -1.000 *
821 S -1.000 *
822 R -1.000 *
823 N -0.465
824 K -0.489
825 E 0.236
826 A -0.474
827 I 0.884
828 L -0.039
829 Y 1.379
830 T 0.554
831 Y 0.930
832 K -0.655
833 L 1.244
834 S -0.672
835 K -0.127
836 G 2.708
837 L -0.684
838 T -0.148
839 E -0.102
840 E 0.469
841 K 0.143
842 N 0.790
843 Y 1.886
844 G 2.708
845 L 1.309
846 K -0.151
847 A 1.155
848 A 1.771
849 E -0.345
850 V 0.373
851 S 1.289
852 S 0.821
853 L 0.737
854 P 1.565
855 P -0.932
856 S -1.161
857 I 1.136
858 V 0.619
859 L -0.849
860 D -0.562
861 A 2.100
862 K -0.281
863 E -0.759
864 I 0.131
865 T -0.095
866 T -0.955
867 Q -0.918
868 I 1.007
869 T -0.597
870 R -0.782
871 Q -0.905
872 I -1.043
873 L -1.147
874 Q -1.177
875 N -1.088
876 Q -1.074
877 R -1.107
878 S -1.040
879 T -1.117
880 P -1.000
881 E -1.022
882 M -1.094
883 E -1.102
884 R -1.086
885 Q -0.986
886 R -1.033
887 A -0.953
888 V -0.802
889 Y -1.159
890 H -1.175
891 L -1.112
892 A -1.111
893 T -1.163
894 R -1.016
895 L -1.018
896 V -0.880
897 Q -0.993
898 T -1.012
899 A -0.809
900 R -0.901
901 N -0.892
902 S -0.782
903 Q -0.658
904 L 0.057
905 D -0.220
906 P -0.562
907 D -0.867
908 S -0.547
909 L -0.005
910 R -0.551
911 I -0.862
912 Y -0.953
913 L 0.491
914 S -0.966
915 N -0.867
916 L 0.729
917 K -0.147
918 K -0.586
919 K -0.567
920 Y -0.395
921 K -1.000 *
922 E -1.000 *
923 D -1.000 *
924 F -1.000 *
925 P -1.000 *
926 R -1.000 *
927 T -1.000 *
928 E -1.000 *
929 Q -1.000 *
930 V -1.000 *
931 P -1.000 *
932 E -1.000 *
933 K -1.000 *
934 T -1.000 *
935 E -1.000 *
936 E -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 185.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MLRPEISSTS PSAPAVSPSS GETRSPQGPR YNFGLQETPQ SRPSVQVVSA STCPGTSGAA
70 80 90 100 110 120
GDRSSSSSSL PCPAPNSRPA QGSYFGNKRA YAENTVASNF TFGASSSSAR DTNYPQTLKT
130 140 150 160 170 180
PLSTGNPQRS GYKSWTPQVG YSASSSSAIS AHSPSVIVAV VEGRGLARGE IGMASIDLKN
190 200 210 220 230 240
PQIILSQFAD NTTYAKVITK LKILSPLEII MSNTACAVGN STKLFTLITE NFKNVNFTTI
250 260 270 280 290 300
QRKYFNETKG LEYIEQLCIA EFSTVLMEVQ SKYYCLAAVA ALLKYVEFIQ NSVYAPKSLK
310 320 330 340 350 360
ICFQGSEQTA MIDSSSAQNL ELLINNQDYR NNHTLFGVLN YTKTPGGSRR LRSNILEPLV
370 380 390 400 410 420
DIETINMRLD CVQELLQDEE LFFGLQSVIS RFLDTEQLLS VLVQIPKQDT VNAAESKITN
430 440 450 460 470 480
LIYLKHTLEL VDPLKIAMKN CNTPLLRAYY GSLEDKRFGI ILEKIKTVIN DDARYMKGCL
490 500 510 520 530 540
NMRTQKCYAV RSNINEFLDI ARRTYTEIVD DIAGMISQLG EKYSLPLRTS FSSARGFFIQ
550 560 570 580 590 600
MTTDCIALPS DQLPSEFIKI SKVKNSYSFT SADLIKMNER CQESLREIYH MTYMIVCKLL
610 620 630 640 650 660
SEIYEHIHCL YKLSDTVSML DMLLSFAHAC TLSDYVRPEF TDTLAIKQGW HPILEKISAE
670 680 690 700 710 720
KPIANNTYVT EGSNFLIITG PNMSGKSTYL KQIALCQIMA QIGSYVPAEY SSFRIAKQIF
730 740 750 760 770 780
TRISTDDDIE TNSSTFMKEM KEIAYILHNA NDKSLILIDE LGRGTNTEEG IGICYAVCEY
790 800 810 820 830 840
LLSLKAFTLF ATHFLELCHI DALYPNVENM HFEVQHVKNT SRNKEAILYT YKLSKGLTEE
850 860 870 880 890 900
KNYGLKAAEV SSLPPSIVLD AKEITTQITR QILQNQRSTP EMERQRAVYH LATRLVQTAR
910 920 930
NSQLDPDSLR IYLSNLKKKY KEDFPRTEQV PEKTEE
Working together with MSH5, hMSH4 forms a heterodimeric complex and is involved in meiotic chromosomal activity such as homologous recombination and mismatch repair. Co-expression for hMSH4 and hMSH5 improved nuclear localization of both proteins in an LMB-sensitive manner, suggesting interaction between the two proteins contribute to their cellular localization. hMSH4 NES were identified to be between amino acids 421-430 and 797-805. Interaction with VBP1 suggests that hMSH4 might be anchored to the cytoplasm by VBP1 and involved in microtubule assembly to maintain proper chromosomal positioning during meiosis.
[1]. "CRM1-dependent nuclear export and dimerization with hMSH5 contribute to the regulation of hMSH4 subcellular localization."
Neyton S, Lespinasse F, Lahaye F, Staccini P, Paquis-Flucklinger V, Santucci-Darmanin S. (2007)
Exp Cell Res,
313:3680-93
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.