NESdb

ORF9 protein UniProt

Tegument protein VP22, Tegument protein 9

Varicella-zoster virus

LMB Sensitive ^{Ref.1Characterization of the nuclear import and export signals and its subcellular transport mechanism of VZV ORF9., Mingsheng et al., J Gen Virol, 2010}

*highlighted yellow in the full sequence

L103A/L107A/L117A ^{Ref.1Characterization of the nuclear import and export signals and its subcellular transport mechanism of VZV ORF9., Mingsheng et al., J Gen Virol, 2010}

Unknown

*shown as underlined residues in the full sequence

¹⁰³LRHELVEDAVYENPL¹¹⁷ ^{Ref.1Characterization of the nuclear import and export signals and its subcellular transport mechanism of VZV ORF9., Mingsheng et al., J Gen Virol, 2010}

Unknown

Show FASTA Format

>gi|123856080|sp|Q4JQW6.1|VP22_VZVO RecName: Full=Tegument protein VP22; AltName: Full=ORF9 protein; AltName: Full=Tegument protein 9
MASSDGDRLCRSNAVRRKTTPSYSGQYRTARRSVVVGPPDDSDDSLGYITTVGADSPSPVYADLYFEHKN
TTPRVHQPNDSSGSEDDFEDIDEVVAAFREARLRHELVEDAVYENPLSVEKPSRSFTKNAAVKPKLEDSP
KRAPPGAGAIASGRPISFSTAPKTATSSWCGPTPSYNKRVFCEAVRRVAAMQAQKAAEAAWNSNPPRNNA
ELDRLLTGAVIRITVHEGLNLIQAANEADLGEGASVSKRGHNRKTGDLQGGMGNEPMYAQVRKPKSRTDT
QTTGRITNRSRARSASRTDARK

Show Domain Info by CDD

Show Secondary Structure by PSIPRED

    	# PSIPRED HFORMAT (PSIPRED V3.2)

Conf: 999865310000011002689887753443230574699999997521476147999960
Pred: CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCC
  AA: MASSDGDRLCRSNAVRRKTTPSYSGQYRTARRSVVVGPPDDSDDSLGYITTVGADSPSPV
              10        20        30        40        50        60


Conf: 002100112777600179999999886020799999999987544332221015999999
Pred: CCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
  AA: YADLYFEHKNTTPRVHQPNDSSGSEDDFEDIDEVVAAFREARLRHELVEDAVYENPLSVE
              70        80        90       100       110       120


Conf: 998310001247998779999999997654467755323699999998657874565302
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
  AA: KPSRSFTKNAAVKPKLEDSPKRAPPGAGAIASGRPISFSTAPKTATSSWCGPTPSYNKRV
             130       140       150       160       170       180


Conf: 477889999999999999974039999938899984103178996267005887422002
Pred: HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEEEECCCHHHHHHHHHCC
  AA: FCEAVRRVAAMQAQKAAEAAWNSNPPRNNAELDRLLTGAVIRITVHEGLNLIQAANEADL
             190       200       210       220       230       240


Conf: 457776546788766666789999862012358999875578885322223565665335
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
  AA: GEGASVSKRGHNRKTGDLQGGMGNEPMYAQVRKPKSRTDTQTTGRITNRSRARSASRTDA
             250       260       270       280       290       300


Conf: 89
Pred: CC
  AA: RK

Show Conservation Score by AL2CO

1     M      -1.000    *
2     A      -1.000    *
3     S      -1.000    *
4     S      -1.000    *
5     D      -1.000    *
6     G      -1.000    *
7     D      -1.000    *
8     R      -1.000    *
9     L      -1.000    *
10    C      -1.000    *
11    R      -1.000    *
12    S      -1.000    *
13    N      -1.000    *
14    A      -1.000    *
15    V      -1.000    *
16    R      -1.000    *
17    R      -1.000    *
18    K      -1.000    *
19    T      -1.000    *
20    T      -1.000    *
21    P      -1.000    *
22    S      -1.000    *
23    Y      -1.000    *
24    S      -1.000    *
25    G      -1.000    *
26    Q      -1.000    *
27    Y      -1.000    *
28    R      -1.000    *
29    T      -1.000    *
30    A      -1.000    *
31    R      -1.000    *
32    R      -1.000    *
33    S      -1.000    *
34    V      -1.000    *
35    V      -1.000    *
36    V      -1.000    *
37    G      -1.000    *
38    P      -1.000    *
39    P      -1.000    *
40    D      -1.000    *
41    D      -1.000    *
42    S      -1.000    *
43    D      -1.000    *
44    D      -1.000    *
45    S      -1.000    *
46    L      -1.000    *
47    G      -1.000    *
48    Y      -1.000    *
49    I      -1.000    *
50    T      -1.000    *
51    T      -1.000    *
52    V      -1.000    *
53    G      -1.000    *
54    A      -1.000    *
55    D      -1.000    *
56    S      -1.000    *
57    P      -1.000    *
58    S      -1.000    *
59    P      -1.000    *
60    V      -1.000    *
61    Y      -1.000    *
62    A      -1.000    *
63    D      -1.000    *
64    L      -1.000    *
65    Y      -1.000    *
66    F      -1.000    *
67    E      -1.000    *
68    H      -1.000    *
69    K      -1.000    *
70    N      -1.000    *
71    T      -1.000    *
72    T      -1.000    *
73    P      -1.000    *
74    R      -1.000    *
75    V      -1.000    *
76    H      -1.000    *
77    Q      -1.000    *
78    P      -1.000    *
79    N      -1.000    *
80    D      -1.000    *
81    S      -1.000    *
82    S      -1.000    *
83    G      -1.000    *
84    S      -1.000    *
85    E      -1.000    *
86    D      -1.000    *
87    D      -1.000    *
88    F      -1.000    *
89    E      -1.000    *
90    D      -1.000    *
91    I      -1.000    *
92    D      -1.000    *
93    E      -1.000    *
94    V      -1.000    *
95    V      -1.000    *
96    A      -1.000    *
97    A      -1.000    *
98    F      -1.000    *
99    R      -1.000    *
100   E      -1.000    *
101   A      -1.000    *
102   R      -1.000    *
103   L      -1.000    *
104   R      -1.000    *
105   H      -1.000    *
106   E      -1.000    *
107   L      -1.000    *
108   V      -1.000    *
109   E      -1.000    *
110   D      -1.000    *
111   A      -1.000    *
112   V      -1.000    *
113   Y      -1.000    *
114   E       0.127
115   N      -0.909
116   P       1.007
117   L      -0.875
118   S      -1.266
119   V      -0.876
120   E      -1.266
121   K      -0.458
122   P       0.279
123   S      -0.415
124   R       0.266
125   S      -0.415
126   F      -0.892
127   T      -0.892
128   K      -0.455
129   N      -0.451
130   A      -0.892
131   A       0.848
132   V       0.197
133   K       0.103
134   P      -0.892
135   K      -0.879
136   L      -0.449
137   E      -1.236
138   D       0.137
139   S      -1.191
140   P      -0.381
141   K      -1.225
142   R       1.056
143   A       1.056
144   P      -0.392
145   P       1.056
146   G       2.073
147   A       0.185
148   G      -0.463
149   A       0.306
150   I       0.149
151   A      -0.854
152   S       0.138
153   G       0.143
154   R       0.819
155   P       0.117
156   I       0.147
157   S      -0.364
158   F       2.073
159   S       1.077
160   T      -0.296
161   A       0.862
162   P       2.073
163   K      -1.199
164   T       0.140
165   A      -0.833
166   T       0.313
167   S       0.154
168   S      -1.216
169   W       2.073
170   C      -0.464
171   G      -0.422
172   P      -0.422
173   T       1.056
174   P      -1.232
175   S      -0.350
176   Y       0.782
177   N       2.073
178   K      -0.383
179   R       0.301
180   V       0.139
181   F       2.073
182   C       2.073
183   E      -0.392
184   A       2.073
185   V       0.878
186   R       0.084
187   R      -0.401
188   V       0.317
189   A       2.073
190   A       0.181
191   M      -1.201
192   Q       0.138
193   A       1.065
194   Q      -0.435
195   K      -0.448
196   A       0.811
197   A       2.073
198   E      -0.464
199   A       0.161
200   A       0.208
201   W       2.073
202   N      -0.440
203   S      -0.845
204   N      -0.840
205   P      -0.277
206   P       2.073
207   R       0.278
208   N       0.138
209   N       0.848
210   A       0.828
211   E      -0.802
212   L       2.073
213   D       0.182
214   R      -0.462
215   L       0.130
216   L       2.073
217   T      -1.513
218   G      -0.860
219   A       0.869
220   V      -0.780
221   I       0.804
222   R       0.781
223   I       0.848
224   T       1.059
225   V       0.907
226   H      -0.435
227   E       2.073
228   G       2.073
229   L      -0.847
230   N      -0.296
231   L       2.073
232   I       0.248
233   Q      -0.848
234   A      -0.852
235   A       2.073
236   N       0.811
237   E      -0.352
238   A      -1.221
239   D      -1.534
240   L      -0.313
241   G      -0.842
242   E      -0.833
243   G      -0.419
244   A      -0.880
245   S      -1.534
246   V      -0.842
247   S      -0.779
248   K      -1.188
249   R      -1.210
250   G      -1.210
251   H      -1.507
252   N      -0.836
253   R      -0.840
254   K      -0.833
255   T      -1.245
256   G      -0.473
257   D      -0.446
258   L      -0.885
259   Q      -1.266
260   G      -0.884
261   G       1.016
262   M      -0.446
263   G      -0.457
264   N      -0.472
265   E      -1.000    *
266   P      -1.000    *
267   M      -1.000    *
268   Y      -1.000    *
269   A      -1.000    *
270   Q      -1.000    *
271   V      -1.000    *
272   R      -1.000    *
273   K      -1.000    *
274   P      -1.000    *
275   K      -1.000    *
276   S      -0.490
277   R       0.940
278   T       0.175
279   D      -0.445
280   T      -0.926
281   Q       0.075
282   T      -0.463
283   T      -0.463
284   G       0.127
285   R      -1.000    *
286   I      -1.000    *
287   T      -1.000    *
288   N      -1.000    *
289   R      -1.000    *
290   S      -1.000    *
291   R      -1.000    *
292   A      -1.000    *
293   R      -1.000    *
294   S      -1.000    *
295   A      -1.000    *
296   S      -1.000    *
297   R      -1.000    *
298   T      -1.000    *
299   D      -1.000    *
300   A      -1.000    *
301   R      -1.000    *
302   K      -1.000    *
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - 189.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50

        10         20         30         40         50         60 MASSDGDRLC RSNAVRRKTT PSYSGQYRTA RRSVVVGPPD DSDDSLGYIT TVGADSPSPV 
        70         80         90        100        110        120 
YADLYFEHKN TTPRVHQPND SSGSEDDFED IDEVVAAFRE ARLRHELVED AVYENPLSVE 
       130        140        150        160        170        180 KPSRSFTKNA AVKPKLEDSP KRAPPGAGAI ASGRPISFST APKTATSSWC GPTPSYNKRV 
       190        200        210        220        230        240 FCEAVRRVAA MQAQKAAEAA WNSNPPRNNA ELDRLLTGAV IRITVHEGLN LIQAANEADL 
       250        260        270        280        290        300 GEGASVSKRG HNRKTGDLQG GMGNEPMYAQ VRKPKSRTDT QTTGRITNRS RARSASRTDA 
                                                                  RK

Not Available

Open reading frame 9 (ORF9), a VZV-encoded late protein, is a member of the highly conserved alpha herpesvirus UL49 family. ORF9 was known to exhibit a predominantly cytoplasmic localization in VZV-infected cells. ORF9 contains both an NES purported to be between amino acids 103-117, and a bipartite NLS from aa 16-32.

[1]. "Characterization of the nuclear import and export signals and its subcellular transport mechanism of VZV ORF9."
Mingsheng C, Shuai W, Junji X, Chunfu Z. (2010) J Gen Virol, : PubMed

Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus. Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.

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