Show FASTA Format
>gi|417134|sp|P32182.1|FOXA2_RAT RecName: Full=Hepatocyte nuclear factor 3-beta; Short=HNF-3-beta; Short=HNF-3B; AltName: Full=Forkhead box protein A2
MLGAVKMEGHEPSDWSSYYAEPEGYSSVSNMNASLGMNGMNTYMSMSAAAMGSGSGNMSAGSMNMSSYVG
AGMSPSLAGMSPGAGAMAGMSGSAGAAGVAGMGPHLSPSLSPLGGQAAGAMGGLAPYANMNSMSPMYGQA
GLSRARDPKTYRRSYTHAKPPYSYISLITMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHS
LSFNDFLKVPRAPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKCENELALKEAAGAGSGGGKKTAPGT
QASQVQLGEAAGSASETPAGTESPHSSASPCQEHKRGGLSELKGTPASALSPPEPAPSPGQQQQAAAHLL
GPPHHPGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHSHHHHQPHKMDLKTYEQVMHYPGGYGSPMP
GSLAMGPVTNKAGLDASPLAADTSYYQGVYSRPIMNSS
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 987521466799999877889987655666765678877644555654768999999998
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MLGAVKMEGHEPSDWSSYYAEPEGYSSVSNMNASLGMNGMNTYMSMSAAAMGSGSGNMSA
10 20 30 40 50 60
Conf: 888886778999999989999999888899999999999999999999998765778876
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: GSMNMSSYVGAGMSPSLAGMSPGAGAMAGMSGSAGAAGVAGMGPHLSPSLSPLGGQAAGA
70 80 90 100 110 120
Conf: 799999999998996674478899999998788677899997267999999741986432
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
AA: MGGLAPYANMNSMSPMYGQAGLSRARDPKTYRRSYTHAKPPYSYISLITMAIQQSPNKML
130 140 150 160 170 180
Conf: 188999999831212244333110343333445652025799999999765200799988
Pred: HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: TLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDFLKVPRAPDKPGKGSFWTLHPDSGN
190 200 210 220 230 240
Conf: 667861133102220257788898633999999999999977423346667999989999
Pred: CCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MFENGCYLRRQKRFKCENELALKEAAGAGSGGGKKTAPGTQASQVQLGEAAGSASETPAG
250 260 270 280 290 300
Conf: 999999999863223699877658999989999999998410112223489999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: TESPHSSASPCQEHKRGGLSELKGTPASALSPPEPAPSPGQQQQAAAHLLGPPHHPGLPP
310 320 330 340 350 360
Conf: 889899999999999884546787545899999989998890234331489999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC
AA: EAHLKPEHHYAFNHPFSINNLMSSEQQHHHSHHHHQPHKMDLKTYEQVMHYPGGYGSPMP
370 380 390 400 410 420
Conf: 98889987778999999999999854343356555689
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: GSLAMGPVTNKAGLDASPLAADTSYYQGVYSRPIMNSS
430 440 450
Show Conservation Score by AL2CO
1 M -1.000 *
2 L -1.000 *
3 G -1.000 *
4 A -1.000 *
5 V -1.000 *
6 K -1.000 *
7 M -1.000 *
8 E -1.000 *
9 G -1.000 *
10 H -1.000 *
11 E -1.000 *
12 P -1.000 *
13 S -1.000 *
14 D -1.000 *
15 W -1.000 *
16 S -1.000 *
17 S -1.000 *
18 Y -1.000 *
19 Y -1.000 *
20 A -1.000 *
21 E -1.000 *
22 P -1.000 *
23 E -1.000 *
24 G -1.000 *
25 Y -1.000 *
26 S -1.000 *
27 S -1.000 *
28 V -1.000 *
29 S -1.000 *
30 N -1.000 *
31 M -1.000 *
32 N -1.000 *
33 A -1.000 *
34 S -1.000 *
35 L -1.000 *
36 G -1.000 *
37 M -1.000 *
38 N -1.000 *
39 G -1.000 *
40 M -1.000 *
41 N -1.000 *
42 T -1.000 *
43 Y -1.000 *
44 M -1.000 *
45 S -1.000 *
46 M -1.000 *
47 S -1.000 *
48 A -1.000 *
49 A -1.000 *
50 A -1.000 *
51 M -1.000 *
52 G -1.000 *
53 S -1.000 *
54 G -1.000 *
55 S -1.000 *
56 G -1.000 *
57 N -1.000 *
58 M -1.000 *
59 S -0.458
60 A -0.484
61 G -0.331
62 S -0.574
63 M -0.553
64 N -0.565
65 M -0.388
66 S -0.376
67 S -0.587
68 Y -0.552
69 V -0.471
70 G -0.380
71 A -0.356
72 G -0.447
73 M -0.518
74 S -0.277
75 P -0.348
76 S -0.487
77 L -0.521
78 A -0.558
79 G -0.278
80 M -0.438
81 S -0.455
82 P -0.612
83 G -0.225
84 A -0.557
85 G -0.502
86 A -0.482
87 M -0.488
88 A -0.556
89 G -0.379
90 M -0.416
91 S -0.496
92 G -0.383
93 S -0.410
94 A -0.320
95 G -0.483
96 A -0.551
97 A -0.306
98 G -0.432
99 V -0.502
100 A -0.526
101 G -0.186
102 M -0.441
103 G -0.455
104 P -0.520
105 H -0.549
106 L -0.334
107 S -0.525
108 P -0.545
109 S -0.591
110 L -0.446
111 S -0.420
112 P -0.429
113 L -0.459
114 G -0.604
115 G -0.585
116 Q -0.659
117 A -0.526
118 A -0.377
119 G -0.343
120 A -0.489
121 M -0.487
122 G -0.475
123 G -0.229
124 L -0.521
125 A -0.401
126 P -0.461
127 Y -0.437
128 A -0.442
129 N -0.585
130 M -0.544
131 N -0.442
132 S -0.652
133 M -0.624
134 S -0.560
135 P -0.544
136 M -0.632
137 Y -0.495
138 G -0.472
139 Q -0.388
140 A -0.356
141 G -0.440
142 L -0.585
143 S -0.488
144 R -0.607
145 A -0.452
146 R -0.598
147 D -0.490
148 P -0.517
149 K -0.412
150 T -0.558
151 Y -0.414
152 R -0.541
153 R -0.526
154 S -0.443
155 Y -0.402
156 T -0.353
157 H -0.519
158 A -0.124
159 K 2.041
160 P 3.310
161 P 2.169
162 Y 1.128
163 S 3.310
164 Y 3.310
165 I 1.151
166 S 1.007
167 L 2.504
168 I 2.060
169 T 0.376
170 M 1.405
171 A 2.437
172 I 1.509
173 Q -0.235
174 Q 0.033
175 S 0.391
176 P 0.014
177 N -0.108
178 K 0.389
179 M 0.832
180 L 0.919
181 T 1.795
182 L 3.310
183 S 1.300
184 E 0.398
185 I 1.613
186 Y 2.230
187 Q 0.178
188 W 1.277
189 I 2.058
190 M 0.232
191 D 0.455
192 L 0.569
193 F 2.376
194 P 1.005
195 F 1.747
196 Y 2.067
197 R 0.395
198 Q -0.071
199 N 0.676
200 Q 0.386
201 Q 0.680
202 R 0.851
203 W 2.780
204 Q 1.678
205 N 3.310
206 S 3.310
207 I 1.860
208 R 3.310
209 H 3.310
210 S 2.111
211 L 3.310
212 S 2.672
213 F 2.076
214 N 2.031
215 D 1.481
216 F 2.109
217 L 0.492
218 K 2.027
219 V 1.159
220 P 0.672
221 R 2.100
222 A 0.025
223 P -0.019
224 D 0.314
225 K 0.485
226 P 1.736
227 G 2.285
228 K 2.254
229 G 2.476
230 S 0.689
231 F 1.712
232 W 3.310
233 T 0.783
234 L 1.938
235 H 1.604
236 P 0.918
237 D -0.089
238 S 0.813
239 G -0.236
240 N 0.245
241 M 0.393
242 F 1.719
243 E 0.067
244 N 0.451
245 G 0.978
246 C 0.187
247 Y 0.265
248 L 0.518
249 R 1.767
250 R 0.471
251 Q 0.972
252 K 0.238
253 R 0.195
254 F 0.036
255 K -0.155
256 C -0.393
257 E -0.607
258 N -0.491
259 E -0.365
260 L -0.622
261 A -0.582
262 L -0.530
263 K -0.457
264 E -0.585
265 A -0.525
266 A -0.579
267 G -0.430
268 A -0.553
269 G -0.432
270 S -0.580
271 G -0.443
272 G -0.605
273 G -0.647
274 K -0.456
275 K -0.603
276 T -0.626
277 A -0.697
278 P -0.524
279 G -0.498
280 T -0.684
281 Q -0.526
282 A -0.550
283 S -0.621
284 Q -0.579
285 V -0.598
286 Q -0.594
287 L -0.709
288 G -0.602
289 E -0.666
290 A -0.568
291 A -0.710
292 G -0.641
293 S -0.636
294 A -0.621
295 S -0.653
296 E -0.565
297 T -0.567
298 P -0.589
299 A -0.563
300 G -0.668
301 T -0.715
302 E -0.654
303 S -0.683
304 P -0.598
305 H -0.633
306 S -0.709
307 S -0.638
308 A -0.656
309 S -0.583
310 P -0.424
311 C -0.654
312 Q -0.656
313 E -0.557
314 H -0.623
315 K -0.539
316 R -0.675
317 G -0.589
318 G -0.691
319 L -0.730
320 S -0.643
321 E -0.603
322 L -0.700
323 K -0.598
324 G -0.716
325 T -0.705
326 P -0.520
327 A -0.653
328 S -0.683
329 A -0.699
330 L -0.736
331 S -0.513
332 P -0.629
333 P -0.652
334 E -0.623
335 P -0.515
336 A -0.732
337 P -0.611
338 S -0.669
339 P -0.579
340 G -0.662
341 Q -0.542
342 Q -0.593
343 Q -0.592
344 Q -0.685
345 A -0.676
346 A -0.652
347 A -0.617
348 H -0.654
349 L -0.643
350 L -0.717
351 G -0.600
352 P -0.668
353 P -0.496
354 H -0.595
355 H -0.613
356 P -0.673
357 G -0.435
358 L -0.529
359 P -0.587
360 P -0.514
361 E -0.565
362 A -0.526
363 H -0.479
364 L -0.466
365 K -0.582
366 P -0.458
367 E -0.481
368 H -0.440
369 H -0.540
370 Y -0.587
371 A -0.480
372 F -0.599
373 N -0.422
374 H -0.395
375 P -0.417
376 F -0.315
377 S -0.447
378 I -0.370
379 N -0.171
380 N -0.299
381 L -0.288
382 M -0.188
383 S -0.373
384 S -0.387
385 E -0.505
386 Q -0.109
387 Q -1.000 *
388 H -1.000 *
389 H -1.000 *
390 H -1.000 *
391 S -1.000 *
392 H -1.000 *
393 H -1.000 *
394 H -1.000 *
395 H -1.000 *
396 Q -1.000 *
397 P -1.000 *
398 H -0.412
399 K -0.351
400 M -0.478
401 D -0.342
402 L -0.422
403 K -0.489
404 T -0.338
405 Y -0.428
406 E -0.326
407 Q -0.546
408 V -0.438
409 M -0.294
410 H -0.440
411 Y -1.000 *
412 P -1.000 *
413 G -0.435
414 G -1.000 *
415 Y -1.000 *
416 G -1.000 *
417 S -1.000 *
418 P -1.000 *
419 M -1.000 *
420 P -1.000 *
421 G -1.000 *
422 S -1.000 *
423 L -1.000 *
424 A -1.000 *
425 M -1.000 *
426 G -1.000 *
427 P -1.000 *
428 V -1.000 *
429 T -1.000 *
430 N -1.000 *
431 K -1.000 *
432 A -1.000 *
433 G -1.000 *
434 L -1.000 *
435 D -1.000 *
436 A -1.000 *
437 S -1.000 *
438 P -1.000 *
439 L -1.000 *
440 A -1.000 *
441 A -1.000 *
442 D -1.000 *
443 T -1.000 *
444 S -1.000 *
445 Y -1.000 *
446 Y -1.000 *
447 Q -1.000 *
448 G -1.000 *
449 V -1.000 *
450 Y -1.000 *
451 S -1.000 *
452 R -1.000 *
453 P -1.000 *
454 I -1.000 *
455 M -1.000 *
456 N -1.000 *
457 S -1.000 *
458 S -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 191.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MLGAVKMEGH EPSDWSSYYA EPEGYSSVSN MNASLGMNGM NTYMSMSAAA MGSGSGNMSA
70 80 90 100 110 120
GSMNMSSYVG AGMSPSLAGM SPGAGAMAGM SGSAGAAGVA GMGPHLSPSL SPLGGQAAGA
130 140 150 160 170 180
MGGLAPYANM NSMSPMYGQA GLSRARDPKT YRRSYTHAKP PYSYISLITM AIQQSPNKML
190 200 210 220 230 240
TLSEIYQWIM DLFPFYRQNQ QRWQNSIRHS LSFNDFLKVP RAPDKPGKGS FWTLHPDSGN
250 260 270 280 290 300
MFENGCYLRR QKRFKCENEL ALKEAAGAGS GGGKKTAPGT QASQVQLGEA AGSASETPAG
310 320 330 340 350 360
TESPHSSASP CQEHKRGGLS ELKGTPASAL SPPEPAPSPG QQQQAAAHLL GPPHHPGLPP
370 380 390 400 410 420
EAHLKPEHHY AFNHPFSINN LMSSEQQHHH SHHHHQPHKM DLKTYEQVMH YPGGYGSPMP
430 440 450
GSLAMGPVTN KAGLDASPLA ADTSYYQGVY SRPIMNSS
Expressed in the gut, central nervous system, neuroendocrine cells, and lungs, Foxa2 contains an NES between amino acids 106-113 upstream of its AKT phosphorylation site.
[1]. "Nuclear export-independent inhibition of Foxa2 by insulin."
Howell JJ, Stoffel M (2009)
J Biol Chem,
284:24816-24
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.