Show FASTA Format
>gi|135922|sp|P28289.1|TMOD1_HUMAN RecName: Full=Tropomodulin-1; AltName: Full=Erythrocyte tropomodulin; Short=E-Tmod
MSYRRELEKYRDLDEDEILGALTEEELRTLENELDELDPDNALLPAGLRQKDQTTKAPTGPFKREELLDH
LEKQAKEFKDREDLVPYTGEKRGKVWVPKQKPLDPVLESVTLEPELEEALANASDAELCDIAAILGMHTL
MSNQQYYQALSSSSIMNKEGLNSVIKPTQYKPVPDEEPNSTDVEETLERIKNNDPKLEEVNLNNIRNIPI
PTLKAYAEALKENSYVKKFSIVGTRSNDPVAYALAEMLKENKVLKTLNVESNFISGAGILRLVEALPYNT
SLVEMKIDNQSQPLGNKVEMEIVSMLEKNATLLKFGYHFTQQGPRLRASNAMMNNNDLVRKRRLADLTGP
IIPKCRSGV
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 930432110379996787403999999999966302499999989887655333579998
Pred: CCHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
AA: MSYRRELEKYRDLDEDEILGALTEEELRTLENELDELDPDNALLPAGLRQKDQTTKAPTG
10 20 30 40 50 60
Conf: 662588978999998543086677775444578655678999995565678743789997
Pred: CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
AA: PFKREELLDHLEKQAKEFKDREDLVPYTGEKRGKVWVPKQKPLDPVLESVTLEPELEEAL
70 80 90 100 110 120
Conf: 204540012356664036788626788863067877766887777888889899999999
Pred: HCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: ANASDAELCDIAAILGMHTLMSNQQYYQALSSSSIMNKEGLNSVIKPTQYKPVPDEEPNS
130 140 150 160 170 180
Conf: 997999999870699874113667789996889999999830871137763205789189
Pred: CCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH
AA: TDVEETLERIKNNDPKLEEVNLNNIRNIPIPTLKAYAEALKENSYVKKFSIVGTRSNDPV
190 200 210 220 230 240
Conf: 999999985248621441345777759999999973589730133305775666528999
Pred: HHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHH
AA: AYALAEMLKENKVLKTLNVESNFISGAGILRLVEALPYNTSLVEMKIDNQSQPLGNKVEM
250 260 270 280 290 300
Conf: 99999985455100100110387557999999850289998874205899997545899
Pred: HHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
AA: EIVSMLEKNATLLKFGYHFTQQGPRLRASNAMMNNNDLVRKRRLADLTGPIIPKCRSGV
310 320 330 340 350
Show Conservation Score by AL2CO
1 M -1.000 *
2 S -1.000 *
3 Y -1.000 *
4 R -1.000 *
5 R -1.000 *
6 E -1.000 *
7 L -1.000 *
8 E -1.000 *
9 K -1.000 *
10 Y -1.000 *
11 R -1.000 *
12 D -1.000 *
13 L -1.000 *
14 D -1.000 *
15 E 2.166
16 D 3.220
17 E 0.796
18 I 2.866
19 L 2.501
20 G 0.532
21 A 0.175
22 L 3.861
23 T 1.628
24 E 1.141
25 E 0.773
26 E 3.262
27 L 2.268
28 R 0.489
29 T 0.309
30 L 1.450
31 E 0.359
32 N -0.269
33 E 1.022
34 L 1.926
35 D -1.000 *
36 E -1.000 *
37 L -1.000 *
38 D 0.911
39 P 2.773
40 D 1.660
41 N -1.000 *
42 A -0.597
43 L -1.000 *
44 L 1.263
45 P 3.075
46 A 0.738
47 G 0.763
48 L -0.368
49 R 0.913
50 Q 0.645
51 K 0.753
52 D 0.868
53 Q 0.632
54 T 1.227
55 T 0.202
56 K 1.359
57 A -0.574
58 P 0.675
59 T -0.410
60 G 1.827
61 P -0.224
62 F 0.439
63 K 0.476
64 R 1.480
65 E 0.209
66 E -0.192
67 L 0.664
68 L 0.018
69 D -0.081
70 H 0.253
71 L -0.074
72 E 0.057
73 K 0.008
74 Q -0.402
75 A 0.052
76 K -0.498
77 E -0.240
78 F -0.960
79 K -0.358
80 D -0.536
81 R -0.573
82 E -0.262
83 D -0.460
84 L -0.959
85 V -0.543
86 P -0.312
87 Y -0.945
88 T -0.638
89 G -0.186
90 E -0.619
91 K -0.788
92 R -0.645
93 G -0.410
94 K -0.459
95 V -0.878
96 W -0.886
97 V -0.733
98 P -0.602
99 K -0.588
100 Q -0.890
101 K -0.581
102 P -0.520
103 L -0.933
104 D -0.846
105 P -0.927
106 V -1.069
107 L -1.026
108 E -0.842
109 S -0.879
110 V -1.002
111 T -0.970
112 L -0.907
113 E -0.611
114 P -0.560
115 E -0.440
116 L -0.964
117 E -0.558
118 E -0.950
119 A -0.755
120 L -0.671
121 A -0.873
122 N -0.882
123 A -0.818
124 S -0.624
125 D -0.556
126 A -0.756
127 E -0.592
128 L -0.928
129 C -1.018
130 D -0.817
131 I -0.757
132 A -0.755
133 A -0.768
134 I -0.900
135 L -0.658
136 G -0.518
137 M -1.067
138 H -0.544
139 T -0.491
140 L -0.880
141 M -0.892
142 S -0.736
143 N -0.665
144 Q -0.841
145 Q -0.600
146 Y -0.967
147 Y -1.021
148 Q -0.486
149 A -0.760
150 L -1.039
151 S -0.905
152 S -0.669
153 S -0.942
154 S -0.783
155 I -0.927
156 M -0.967
157 N -0.662
158 K -1.125
159 E -0.885
160 G -0.940
161 L -1.149
162 N -0.889
163 S -0.959
164 V -0.675
165 I -0.892
166 K -0.716
167 P -0.951
168 T -0.934
169 Q -0.990
170 Y -1.224
171 K -0.694
172 P -1.044
173 V -0.887
174 P -0.713
175 D -0.624
176 E -0.538
177 E -0.736
178 P -0.784
179 N -0.010
180 S -0.615
181 T -0.355
182 D -0.687
183 V -0.548
184 E -0.086
185 E -0.379
186 T -0.132
187 L 0.571
188 E -0.511
189 R -0.352
190 I 0.724
191 K -0.540
192 N -0.721
193 N 0.093
194 D -0.104
195 P -0.641
196 K -0.744
197 L 0.248
198 E -0.601
199 E -0.883
200 V 1.136
201 N -0.517
202 L 0.078
203 N -0.599
204 N -0.241
205 I -0.770
206 R -0.354
207 N -0.992
208 I 0.308
209 P -0.005
210 I -0.821
211 P -0.505
212 T -0.455
213 L 0.018
214 K -0.836
215 A -0.539
216 Y 1.176
217 A -0.041
218 E -0.302
219 A 0.152
220 L 1.831
221 K -0.473
222 E -0.968
223 N 1.245
224 S -0.273
225 Y -0.682
226 V 1.891
227 K -0.194
228 K -0.782
229 F 1.606
230 S -0.614
231 I 1.421
232 V -0.535
233 G -0.654
234 T 0.643
235 R -0.766
236 S 0.701
237 N -0.181
238 D 0.380
239 P -0.696
240 V 0.255
241 A 0.351
242 Y -0.934
243 A -0.440
244 L 1.426
245 A 0.585
246 E -0.488
247 M 0.414
248 L 1.810
249 K -0.289
250 E -0.720
251 N 1.582
252 K -0.491
253 V -0.386
254 L 2.327
255 K -0.177
256 T -0.662
257 L 2.005
258 N -0.197
259 V 2.238
260 E -0.358
261 S -0.873
262 N 1.787
263 F -0.770
264 I 2.014
265 S 1.041
266 G -0.521
267 A -0.483
268 G 0.548
269 I 0.405
270 L -0.333
271 R -0.201
272 L 1.394
273 V 0.037
274 E 0.135
275 A 0.479
276 L 1.351
277 P -0.648
278 Y -1.082
279 N 0.986
280 T -0.646
281 S -0.033
282 L 2.449
283 V -0.638
284 E -0.553
285 M 1.715
286 K -0.213
287 I 1.213
288 D -0.546
289 N 0.237
290 Q 1.113
291 S -0.150
292 Q -0.126
293 P -0.931
294 L 0.395
295 G 1.135
296 N -0.572
297 K -0.490
298 V 0.316
299 E 0.537
300 M -1.004
301 E -0.588
302 I 1.229
303 V 0.221
304 S -0.245
305 M 0.415
306 L 1.895
307 E -0.636
308 K -0.695
309 N 1.953
310 A -0.793
311 T 0.161
312 L 2.254
313 L -0.263
314 K -0.434
315 F 1.959
316 G 0.121
317 Y 0.859
318 H -0.388
319 F -0.512
320 T -0.201
321 Q -0.859
322 Q -0.054
323 G 1.154
324 P 0.703
325 R 0.970
326 L -0.782
327 R -0.173
328 A 0.603
329 S -0.049
330 N -0.586
331 A 0.054
332 M 0.890
333 M -0.430
334 N -0.125
335 N 3.048
336 N -0.527
337 D 2.092
338 L 0.085
339 V -0.102
340 R 2.385
341 K 0.915
342 R -0.155
343 R 2.681
344 L -1.000 *
345 A -1.000 *
346 D -1.000 *
347 L -1.000 *
348 T -1.000 *
349 G -1.000 *
350 P -1.000 *
351 I -1.000 *
352 I -1.000 *
353 P -1.000 *
354 K -1.000 *
355 C -1.000 *
356 R -1.000 *
357 S -1.000 *
358 G -1.000 *
359 V -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 206.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MSYRRELEKY RDLDEDEILG ALTEEELRTL ENELDELDPD NALLPAGLRQ KDQTTKAPTG
70 80 90 100 110 120
PFKREELLDH LEKQAKEFKD REDLVPYTGE KRGKVWVPKQ KPLDPVLESV TLEPELEEAL
130 140 150 160 170 180
ANASDAELCD IAAILGMHTL MSNQQYYQAL SSSSIMNKEG LNSVIKPTQY KPVPDEEPNS
190 200 210 220 230 240
TDVEETLERI KNNDPKLEEV NLNNIRNIPI PTLKAYAEAL KENSYVKKFS IVGTRSNDPV
250 260 270 280 290 300
AYALAEMLKE NKVLKTLNVE SNFISGAGIL RLVEALPYNT SLVEMKIDNQ SQPLGNKVEM
310 320 330 340 350
EIVSMLEKNA TLLKFGYHFT QQGPRLRASN AMMNNNDLVR KRRLADLTGP IIPKCRSGV
Tmod is the capping protein for the pointed end of actin filaments. E-Tmod is one of four isoforms of Tmod. Wild-type Tmod is located in the cytoplasm in Tmod-rich cardiac myocytes. Moderate nuclear accumulation was noticed after LMB treatment. Mutations L134D/L135E or L135/V showed nuclear localization. It is not clear why L135 to another hydrophobic aa can disrupt nuclear export. Amino acids 340-343 were proposed to be NLS as indicated by mutation studies. Ho
[1]. "Cytoplasmic nuclear transfer of the actin-capping protein tropomodulin."
Kong KY, Kedes L (2004)
J Biol Chem,
279:30856-64
PubMed
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