Selenocysteine insertion sequence-binding protein 2
UniProt
Show FASTA Format
>gi|52788293|sp|Q96T21.2|SEBP2_HUMAN RecName: Full=Selenocysteine insertion sequence-binding protein 2; Short=SECIS-binding protein 2
MASEGPREPESEGIKLSADVKPFVPRFAGLNVAWLESSEACVFPSSAATYYPFVQEPPVTEQKIYTEDMA
FGASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPGSQYLYNQPSCYRGFQTVKHRNENTCPLPQEMK
ALFKKKTYDEKKTYDQQKFDSERADGTISSEIKSARGSHHLSIYAENSLKSDGYHKRTDRKSRIIAKNVS
TSKPEFEFTTLDFPELQGAENNMSEIQKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNNPNESV
TANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPS
YNKEKHIIHPTQKSKASQGSDLEQNEASRKNKKKKEKSTSKYEVLTVQEPPRIEDAEEFPNLAVASERRD
RIETPKFQSKQQPQDNFKNNVKKSQLPVQLDLGGMLTALEKKQHSQHAKQSSKPVVVSVGAVPVLSKECA
SGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDD
TQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEASHLAPNHTTFPKIHSRRFR
DYCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKLKKLKCVIISPNCEK
IQSKGGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVELTVAAR
QAYKTMLENVQQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEKEEPHYIEIWKKHLEAYSGCTLELEE
SLEASTSQMMNLNL
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 999999999889833210005787766786324579988776787675447766799974
Pred: CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MASEGPREPESEGIKLSADVKPFVPRFAGLNVAWLESSEACVFPSSAATYYPFVQEPPVT
10 20 30 40 50 60
Conf: 444686455789899999788865557999899886134578789898889889999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: EQKIYTEDMAFGASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPGSQYLYNQPSCYR
70 80 90 100 110 120
Conf: 973455789989999800001123444456665564345656799877753334568877
Pred: CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: GFQTVKHRNENTCPLPQEMKALFKKKTYDEKKTYDQQKFDSERADGTISSEIKSARGSHH
130 140 150 160 170 180
Conf: 542223566878866678853311224678899874433558875558787631013699
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: LSIYAENSLKSDGYHKRTDRKSRIIAKNVSTSKPEFEFTTLDFPELQGAENNMSEIQKQP
190 200 210 220 230 240
Conf: 987788888653222123765322367852235899885333445899985545878988
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: KWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNNPNESVTANAATNSPSCTRELSWTPM
250 260 270 280 290 300
Conf: 754445677445689987442221111246899988887898655799885334455698
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: GYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNKEKHIIHP
310 320 330 340 350 360
Conf: 876547789936776885431002477767444455589998765334662233210002
Pred: CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
AA: TQKSKASQGSDLEQNEASRKNKKKKEKSTSKYEVLTVQEPPRIEDAEEFPNLAVASERRD
370 380 390 400 410 420
Conf: 457965446668301210134667775002633101357664321100158998200036
Pred: CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
AA: RIETPKFQSKQQPQDNFKNNVKKSQLPVQLDLGGMLTALEKKQHSQHAKQSSKPVVVSVG
430 440 450 460 470 480
Conf: 765333345564445567889889999998740112232223888899834689877789
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
AA: AVPVLSKECASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKER
490 500 510 520 530 540
Conf: 999963112456898789987678899999998643468998876677878767899999
Pred: HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: QERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSEEP
550 560 570 580 590 600
Conf: 986566433123589999888642455432100011539899999999999999999750
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AA: PGTELQRDTEASHLAPNHTTFPKIHSRRFRDYCSQMLSKEVDACVTDLLKELVRFQDRMY
610 620 630 640 650 660
Conf: 279133310262661089999652039702999668802321058947899999999995
Pred: CCCHHHHHCCCEEEEHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHH
AA: QKDPVKAKTKRRLVLGLREVLKHLKLKKLKCVIISPNCEKIQSKGGLDDTLHTIIDYACE
670 680 690 700 710 720
Conf: 699599980625788652389754799986220179999999999999999999999988
Pred: CCCCEEEEECHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: QNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVELTVAARQAYKTMLENV
730 740 750 760 770 780
Conf: 552029999999999998999999999999998889870799999998641164200113
Pred: HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHH
AA: QQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEKEEPHYIEIWKKHLEAYSGCTLELEE
790 800 810 820 830 840
Conf: 32110111202689
Pred: HHHHHHHHHHCCCC
AA: SLEASTSQMMNLNL
850
Show Conservation Score by AL2CO
1 M -1.000 *
2 A -1.000 *
3 S -1.000 *
4 E -1.000 *
5 G -1.000 *
6 P -1.000 *
7 R 0.463
8 E 0.160
9 P 0.129
10 E -0.806
11 S -0.323
12 E 0.181
13 G 0.935
14 I 0.447
15 K 1.194
16 L 2.312
17 S 2.889
18 A 2.434
19 D 1.843
20 V 2.450
21 K 1.251
22 P 2.889
23 F 2.041
24 V 1.421
25 P 2.889
26 R 1.073
27 F 0.010
28 A 0.173
29 G -0.144
30 L -0.028
31 N -0.658
32 V 0.360
33 A -0.036
34 W -0.121
35 L -0.702
36 E 0.090
37 S 0.182
38 S 0.629
39 E 0.396
40 A 0.534
41 C -0.294
42 V 0.151
43 F 0.602
44 P 1.809
45 S 0.975
46 S 0.651
47 A 0.593
48 A 0.621
49 T 1.204
50 Y 1.076
51 Y 1.127
52 P 1.518
53 F 0.372
54 V 1.095
55 Q 2.174
56 E 1.792
57 P 0.127
58 P 0.295
59 V -0.115
60 T -0.126
61 E -0.465
62 Q 0.048
63 K 0.504
64 I -0.255
65 Y 0.972
66 T -0.064
67 E -0.174
68 D 0.764
69 M -0.533
70 A -0.077
71 F 0.599
72 G 0.180
73 A -0.340
74 S 0.778
75 T -0.009
76 F 0.032
77 P -0.315
78 P -0.018
79 Q -0.004
80 Y -1.000 *
81 L -1.000 *
82 S -1.000 *
83 S -1.000 *
84 E -1.000 *
85 I -1.000 *
86 T -1.000 *
87 L -1.000 *
88 H -0.711
89 P 0.508
90 Y -0.661
91 A -0.642
92 Y -0.520
93 S -0.483
94 P -0.039
95 Y 0.357
96 T 0.180
97 L -0.543
98 D -0.633
99 S -0.144
100 T -0.238
101 Q 0.357
102 N -1.000 *
103 V -1.000 *
104 Y -0.014
105 S 0.579
106 V -0.212
107 P 0.140
108 G -0.571
109 S -0.145
110 Q -0.347
111 Y 0.083
112 L -0.756
113 Y -0.087
114 N -0.448
115 Q -0.284
116 P -0.265
117 S -0.869
118 C -0.900
119 Y -0.334
120 R -0.467
121 G -0.535
122 F -0.179
123 Q 0.034
124 T -0.557
125 V -0.498
126 K -0.230
127 H -0.405
128 R -0.602
129 N -0.880
130 E 0.255
131 N -1.007
132 T -0.408
133 C -0.579
134 P -0.224
135 L -0.630
136 P -0.033
137 Q -0.666
138 E -0.880
139 M -1.038
140 K -0.826
141 A -0.694
142 L -0.889
143 F -0.963
144 K -0.360
145 K -1.076
146 K -0.625
147 T -0.688
148 Y -0.995
149 D -1.059
150 E -0.978
151 K -0.548
152 K -0.827
153 T -0.856
154 Y -1.249
155 D -1.146
156 Q -0.806
157 Q -0.721
158 K -0.847
159 F -0.697
160 D -0.886
161 S -0.821
162 E -0.447
163 R -0.448
164 A -0.575
165 D -0.754
166 G -0.371
167 T -0.997
168 I -1.139
169 S -0.229
170 S -0.578
171 E -1.069
172 I -0.987
173 K -0.281
174 S -0.430
175 A -0.734
176 R -0.425
177 G -0.612
178 S -0.352
179 H -1.232
180 H -1.095
181 L -0.924
182 S -1.112
183 I -1.094
184 Y -1.049
185 A -0.978
186 E -0.685
187 N -0.765
188 S -0.858
189 L -0.373
190 K -0.210
191 S -0.304
192 D -0.293
193 G -0.619
194 Y -0.798
195 H -0.919
196 K 0.003
197 R -0.333
198 T -0.364
199 D -0.679
200 R -0.805
201 K 0.296
202 S -0.078
203 R -0.261
204 I -0.603
205 I -0.387
206 A -0.771
207 K 0.065
208 N -0.708
209 V -0.925
210 S -0.400
211 T -0.799
212 S 0.025
213 K -0.336
214 P 0.442
215 E 0.246
216 F -0.115
217 E -0.018
218 F -0.758
219 T -0.401
220 T -0.288
221 L 0.085
222 D 0.456
223 F 0.276
224 P 0.757
225 E -0.097
226 L 0.374
227 Q -0.768
228 G -0.268
229 A -0.886
230 E -0.531
231 N -0.704
232 N -0.370
233 M -0.921
234 S -0.569
235 E -0.799
236 I -1.295
237 Q -0.861
238 K -0.971
239 Q -0.912
240 P -0.689
241 K -0.526
242 W -0.611
243 G -0.066
244 P -0.029
245 V -0.981
246 H -1.053
247 S -0.220
248 V -0.583
249 S -0.666
250 T -0.668
251 D -0.819
252 I -0.864
253 S -0.478
254 L -0.727
255 L -0.805
256 R -0.505
257 E -0.671
258 V -1.056
259 V -0.851
260 K -0.524
261 P -0.271
262 A -0.881
263 A -1.007
264 V -1.281
265 L -1.012
266 S -0.766
267 K -0.586
268 G -0.574
269 E -0.687
270 I -1.064
271 V -0.676
272 V -1.014
273 K -0.287
274 N -0.747
275 N -0.893
276 P -0.728
277 N -0.973
278 E -0.525
279 S -0.714
280 V -0.731
281 T -0.562
282 A -0.990
283 N -0.949
284 A -0.801
285 A -0.694
286 T -0.917
287 N -0.844
288 S -0.750
289 P -0.348
290 S -0.780
291 C -0.762
292 T -0.927
293 R -1.062
294 E -0.715
295 L -0.944
296 S -0.484
297 W -1.317
298 T -0.865
299 P -0.654
300 M -0.920
301 G -1.000
302 Y -1.261
303 V -0.892
304 V -0.722
305 R -1.094
306 Q -0.712
307 T -1.110
308 L -1.253
309 S -0.959
310 T -1.303
311 E -1.274
312 L -1.263
313 S -0.751
314 A -0.956
315 A -1.034
316 P -0.722
317 K -1.208
318 N -0.856
319 V -0.849
320 T -0.913
321 S -0.318
322 M -1.017
323 I -0.881
324 N -0.507
325 L -0.615
326 K -0.538
327 T -0.894
328 I -0.736
329 A -0.659
330 S -0.358
331 S -0.184
332 A -0.537
333 D -0.477
334 P -0.851
335 K 0.117
336 N -1.214
337 V -0.820
338 S -1.004
339 I -1.237
340 P -0.459
341 S -0.839
342 S -0.939
343 E -0.960
344 A -0.987
345 L -0.965
346 S -0.407
347 S -0.579
348 D -0.859
349 P -0.543
350 S -0.867
351 Y -1.108
352 N -0.907
353 K -0.870
354 E -0.586
355 K -0.324
356 H -1.180
357 I -1.315
358 I -1.030
359 H -0.698
360 P -0.908
361 T -1.127
362 Q -1.020
363 K -0.918
364 S -0.921
365 K -0.652
366 A -1.086
367 S -0.894
368 Q -1.081
369 G -0.902
370 S -0.875
371 D -0.860
372 L -0.933
373 E -0.393
374 Q -0.675
375 N -0.727
376 E -0.970
377 A -1.087
378 S -0.546
379 R -0.469
380 K -0.942
381 N -1.093
382 K -0.523
383 K -0.829
384 K -0.944
385 K -0.832
386 E -0.985
387 K -0.985
388 S -0.761
389 T -0.847
390 S -0.878
391 K -0.966
392 Y -0.927
393 E -0.691
394 V -0.689
395 L -0.973
396 T -0.688
397 V -0.554
398 Q -0.266
399 E -0.173
400 P 0.598
401 P 0.406
402 R -0.131
403 I -0.104
404 E 0.065
405 D 0.254
406 A -0.312
407 E -0.236
408 E 0.415
409 F 0.448
410 P 0.643
411 N -0.472
412 L 0.913
413 A -0.435
414 V -0.693
415 A -0.435
416 S -0.580
417 E -0.370
418 R -0.596
419 R -0.511
420 D -0.744
421 R -0.561
422 I -1.092
423 E -0.838
424 T -0.369
425 P -0.735
426 K -0.126
427 F -1.041
428 Q -0.955
429 S -0.697
430 K -0.275
431 Q -0.488
432 Q -0.474
433 P -0.550
434 Q -0.541
435 D -0.361
436 N -0.599
437 F -0.539
438 K -0.088
439 N -0.300
440 N -0.403
441 V -0.611
442 K -0.003
443 K 1.012
444 S 0.407
445 Q 0.054
446 L 0.026
447 P 0.662
448 V 0.215
449 Q -0.124
450 L 0.605
451 D 0.626
452 L -0.015
453 G 0.594
454 G 0.160
455 M -0.017
456 L 0.782
457 T 0.232
458 A 0.085
459 L 0.875
460 E 0.337
461 K 0.345
462 K 0.007
463 Q 0.310
464 H -0.498
465 S -0.068
466 Q -0.463
467 H -0.314
468 A -0.054
469 K 0.049
470 Q -0.234
471 S -0.371
472 S -0.501
473 K 0.312
474 P 0.885
475 V -0.349
476 V 0.026
477 V -0.790
478 S -0.091
479 V 0.537
480 G 0.149
481 A -0.154
482 V -0.634
483 P 0.136
484 V -0.690
485 L -0.508
486 S -0.884
487 K -0.326
488 E -0.186
489 C -0.947
490 A -0.589
491 S -0.821
492 G -0.691
493 E -0.882
494 R -0.566
495 G -0.676
496 R -1.113
497 R -0.561
498 M -1.055
499 S -0.630
500 Q -0.466
501 M -1.182
502 K -0.714
503 T -0.516
504 P 0.214
505 H -0.359
506 N 0.151
507 P -0.070
508 L 0.657
509 D 1.019
510 S -0.003
511 S 0.211
512 A 0.161
513 P 0.762
514 L -0.005
515 M -0.526
516 K 0.305
517 K 0.868
518 G 0.517
519 K 1.018
520 Q 0.742
521 R 0.733
522 E 0.891
523 I -0.008
524 P 0.641
525 K 1.348
526 A -0.097
527 K 0.763
528 K 0.039
529 P 0.387
530 T 1.430
531 S 0.181
532 L 0.412
533 K 0.788
534 K 1.463
535 I 0.541
536 I 0.716
537 L 1.417
538 K 0.574
539 E 0.467
540 R 1.056
541 Q 1.142
542 E 0.382
543 R 1.117
544 K 0.155
545 Q 0.172
546 R -0.345
547 L -0.026
548 Q -0.772
549 E -0.385
550 N -0.717
551 A -1.055
552 V -0.925
553 S -0.814
554 P -0.317
555 A -0.882
556 F -1.195
557 T -0.601
558 S -1.029
559 D -0.459
560 D -1.054
561 T -0.894
562 Q -0.947
563 D -0.800
564 G -1.019
565 E -1.016
566 S -0.954
567 G -1.100
568 G -0.860
569 D -1.078
570 D -0.850
571 Q -0.928
572 F -1.160
573 P -0.708
574 E -0.942
575 Q -0.422
576 A -1.010
577 E -1.015
578 L -1.182
579 S -0.498
580 G -0.638
581 P -0.990
582 E -1.235
583 G -0.995
584 M -1.054
585 D -0.465
586 E -0.896
587 L -1.015
588 I -1.067
589 S -0.776
590 T -0.777
591 P -0.791
592 S -0.896
593 V -0.921
594 E -0.406
595 D -0.859
596 K -0.642
597 S -0.344
598 E -0.740
599 E -0.646
600 P -0.750
601 P -0.812
602 G -0.902
603 T -0.947
604 E -0.379
605 L -0.922
606 Q -0.886
607 R -0.633
608 D -0.432
609 T -0.844
610 E -0.749
611 A -0.553
612 S -0.859
613 H -1.031
614 L -0.233
615 A -0.665
616 P -0.219
617 N -0.946
618 H -0.528
619 T -0.524
620 T -0.474
621 F -0.236
622 P 0.633
623 K 0.840
624 I 1.883
625 H 2.405
626 S 1.966
627 R 1.099
628 R 1.035
629 F 0.911
630 R 2.428
631 D 1.048
632 Y 2.018
633 C 2.192
634 S 0.655
635 Q 1.137
636 M 0.702
637 L 1.848
638 S 1.285
639 K 0.931
640 E 1.992
641 V 0.795
642 D 1.433
643 A 0.277
644 C 1.264
645 V 1.360
646 T 0.345
647 D -0.261
648 L 2.248
649 L 1.939
650 K 0.863
651 E 1.546
652 L 2.889
653 V 1.689
654 R 0.870
655 F 2.213
656 Q 2.316
657 D 1.484
658 R 0.937
659 M 0.361
660 Y 0.733
661 Q 1.355
662 K 1.264
663 D 1.688
664 P 2.213
665 V 0.099
666 K 1.846
667 A 1.708
668 K 1.907
669 T 0.169
670 K 1.842
671 R 1.708
672 R 2.889
673 L 0.792
674 V 2.213
675 L 1.172
676 G 2.889
677 L 2.213
678 R 1.626
679 E 2.260
680 V 2.213
681 L 0.192
682 K 2.889
683 H 2.298
684 L 1.825
685 K 0.908
686 L 2.213
687 K 0.127
688 K 1.140
689 L 1.274
690 K 2.889
691 C 2.225
692 V 1.573
693 I 1.966
694 I 1.372
695 S 2.063
696 P 2.213
697 N 1.829
698 C 1.769
699 E 2.251
700 K 1.138
701 I 1.042
702 Q 0.900
703 S 1.178
704 K 1.597
705 G 2.194
706 G 2.245
707 L 2.889
708 D 2.245
709 D 1.475
710 T 0.726
711 L 1.612
712 H 1.021
713 T 0.181
714 I 1.107
715 I 2.238
716 D 0.311
717 Y -0.422
718 A 1.053
719 C 1.465
720 E 0.787
721 Q 2.163
722 N -0.047
723 I 1.423
724 P 2.200
725 F 1.214
726 V 1.964
727 F 2.889
728 A 2.200
729 L 2.163
730 N 0.661
731 R 2.200
732 K 1.492
733 A 0.896
734 L 2.889
735 G 2.889
736 R 0.778
737 S 1.099
738 L 1.097
739 N 1.668
740 K 2.163
741 A 0.029
742 V 1.612
743 P 2.163
744 V 1.668
745 S 1.673
746 V 0.643
747 V 1.593
748 G 2.200
749 I 2.114
750 F 2.889
751 S 1.456
752 Y 1.919
753 D 0.417
754 G 1.740
755 A 1.405
756 Q 1.471
757 D 0.297
758 Q -0.035
759 F 1.461
760 H 1.135
761 K 0.742
762 M 1.437
763 V 0.824
764 E 0.383
765 L 1.241
766 T 1.497
767 V -0.131
768 A 1.003
769 A 1.353
770 R 2.296
771 Q -0.070
772 A 0.821
773 Y 2.303
774 K 0.522
775 T -0.438
776 M 1.562
777 L 0.872
778 E 0.212
779 N 0.574
780 V 0.159
781 Q -0.155
782 Q -0.550
783 E 0.081
784 L 0.086
785 V -0.574
786 G -0.128
787 E -0.179
788 P -0.465
789 R -0.797
790 P -1.026
791 Q -1.084
792 A -1.182
793 P -0.847
794 P -0.505
795 S -0.929
796 L -0.608
797 P -0.818
798 T -0.928
799 Q -0.763
800 G -0.807
801 P -0.415
802 S -1.000
803 C -0.471
804 P -0.501
805 A -0.442
806 E -1.139
807 D -0.911
808 G -0.729
809 P -0.561
810 P -1.000 *
811 A -1.000 *
812 L -0.582
813 K 0.080
814 E -0.015
815 K -0.783
816 E 0.419
817 E 1.067
818 P 1.104
819 H -0.085
820 Y 2.065
821 I 0.323
822 E 0.873
823 I 0.366
824 W 2.889
825 K 1.053
826 K -0.136
827 H -0.064
828 L 1.444
829 E 1.612
830 A 0.127
831 Y 1.108
832 S 0.252
833 G -0.116
834 C -0.750
835 T -0.617
836 L 0.113
837 E -0.026
838 L -0.464
839 E 1.117
840 E -0.257
841 S -0.492
842 L -0.311
843 E -0.401
844 A -0.291
845 S -0.289
846 T 0.164
847 S 0.089
848 Q -0.047
849 M -1.000 *
850 M -1.000 *
851 N -1.000 *
852 L -1.000 *
853 N -1.000 *
854 L -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 221.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MASEGPREPE SEGIKLSADV KPFVPRFAGL NVAWLESSEA CVFPSSAATY YPFVQEPPVT
70 80 90 100 110 120
EQKIYTEDMA FGASTFPPQY LSSEITLHPY AYSPYTLDST QNVYSVPGSQ YLYNQPSCYR
130 140 150 160 170 180
GFQTVKHRNE NTCPLPQEMK ALFKKKTYDE KKTYDQQKFD SERADGTISS EIKSARGSHH
190 200 210 220 230 240
LSIYAENSLK SDGYHKRTDR KSRIIAKNVS TSKPEFEFTT LDFPELQGAE NNMSEIQKQP
250 260 270 280 290 300
KWGPVHSVST DISLLREVVK PAAVLSKGEI VVKNNPNESV TANAATNSPS CTRELSWTPM
310 320 330 340 350 360
GYVVRQTLST ELSAAPKNVT SMINLKTIAS SADPKNVSIP SSEALSSDPS YNKEKHIIHP
370 380 390 400 410 420
TQKSKASQGS DLEQNEASRK NKKKKEKSTS KYEVLTVQEP PRIEDAEEFP NLAVASERRD
430 440 450 460 470 480
RIETPKFQSK QQPQDNFKNN VKKSQLPVQL DLGGMLTALE KKQHSQHAKQ SSKPVVVSVG
490 500 510 520 530 540
AVPVLSKECA SGERGRRMSQ MKTPHNPLDS SAPLMKKGKQ REIPKAKKPT SLKKIILKER
550 560 570 580 590 600
QERKQRLQEN AVSPAFTSDD TQDGESGGDD QFPEQAELSG PEGMDELIST PSVEDKSEEP
610 620 630 640 650 660
PGTELQRDTE ASHLAPNHTT FPKIHSRRFR DYCSQMLSKE VDACVTDLLK ELVRFQDRMY
670 680 690 700 710 720
QKDPVKAKTK RRLVLGLREV LKHLKLKKLK CVIISPNCEK IQSKGGLDDT LHTIIDYACE
730 740 750 760 770 780
QNIPFVFALN RKALGRSLNK AVPVSVVGIF SYDGAQDQFH KMVELTVAAR QAYKTMLENV
790 800 810 820 830 840
QQELVGEPRP QAPPSLPTQG PSCPAEDGPP ALKEKEEPHY IEIWKKHLEA YSGCTLELEE
850
SLEASTSQMM NLNL
Selenoproteins contains the nonstandard amino acid selenocysteine (Sec) and function in both the antioxidant defense system and thyroid hormone metabolism. SBP2 is one of the oldest and best-characterized factor involved in the incorporation Sec. It binds to the Sec insertion sequences elements in the 3' untranslated region of selenoprotein mRNA. Oxidantive stress specifically induce nuclear accumulation of SBP2.
[1]. "The redox state of SECIS binding protein 2 controls its localization and selenocysteine incorporation function."
Papp LV, Lu J, Striebel F, Kennedy D, Holmgren A, Khanna KK (2006)
Mol Cell Biol,
26:4895-910
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.