Summary for Pat1b (NES ID: 222)
Full Name
Protein PAT1 homolog 1
UniProt Alternative Names
PAT1-like protein 1
Protein PAT1 homolog b
Organism
Homo sapiens (Human)
Experimental Evidence for CRM1-mediated Export
Mutations That Affect Nuclear Export
Mutations That Affect CRM1 Binding
Unknown
Functional Export Signals
Undetermined
Secondary Structure of Export Signal
unknown (NES not included in PDB)
Other Residues Important for Export
Unknown
Sequence
Show FASTA Format
>gi|182705251|sp|Q86TB9.2|PATL1_HUMAN RecName: Full=Protein PAT1 homolog 1; AltName: Full=PAT1-like protein 1; AltName: Full=Protein PAT1 homolog b; Short=Pat1b; Short=hPat1b
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKLPVAVNEQTGN
GERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGSLNSSIWDGSEVLRRIRGPLL
AQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSPIIGSPPVRAVPIGTPPKQMAVPSFTQQILC
PKPVHVRPPMPPRYPAPYGERMSPNQLCSVPNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPS
QFARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPGFRAFFSAPPSATPPPQQHPPGPGPHLQNLRSQAPMF
RPDTTHLHPQHRRLLHQRQQQNRSQHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKLTVSSV
NNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPALMDDRKH
KICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIKKDAQD
EVLPCLLSPFSLLLYHLPSVSITSLLRQLMNLPQSAATPALSNPHLTAVLQNKFGLSLLLILLSRGEDLQ
SSDPATESTQNNQWTEVMFMATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 975456768998877443368898863111112458999999982467888865431047
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
AA: MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
10 20 30 40 50 60
Conf: 533345799998863122243110478865442102557872221025689889999999
Pred: CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCC
AA: PVAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
70 80 90 100 110 120
Conf: 999888886421247898766788850044211899999999985201100399889999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCC
AA: LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
130 140 150 160 170 180
Conf: 989999987899999988999975334569999888999999999999899999867899
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: IIGSPPVRAVPIGTPPKQMAVPSFTQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
190 200 210 220 230 240
Conf: 997888999999999999911110138999999999999978899999899997899522
Pred: CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
250 260 270 280 290 300
Conf: 236559999999988888899999999999999999998777689999999999988820
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
AA: LQGRVGQMLPPAPGFRAFFSAPPSATPPPQQHPPGPGPHLQNLRSQAPMFRPDTTHLHPQ
310 320 330 340 350 360
Conf: 245566888543200245799999999988765756888568998956677999998843
Pred: HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AA: HRRLLHQRQQQNRSQHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
370 380 390 400 410 420
Conf: 048999960478899999998766554312999952224344435431255678642246
Pred: HCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC
AA: LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEG
430 440 450 460 470 480
Conf: 667755557778711201334578987313454444668999999999988877222100
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AA: SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
490 500 510 520 530 540
Conf: 134688632547999999999999999852249999898856501000103357899754
Pred: CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCHHHHHHHHHHH
AA: RRYLLSLEEERPALMDDRKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
550 560 570 580 590 600
Conf: 279997899999999994012000247876311110367998840465478999999997
Pred: CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AA: LPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVSITSLLRQLM
610 620 630 640 650 660
Conf: 121112478888988125654534699999999998886506999990327789999999
Pred: HCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
AA: NLPQSAATPALSNPHLTAVLQNKFGLSLLLILLSRGEDLQSSDPATESTQNNQWTEVMFM
670 680 690 700 710 720
Conf: 99999721412257999999516888875566877999999863310269
Pred: HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AA: ATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
730 740 750 760 770
Show Conservation Score by AL2CO
1 M -1.000 *
2 F -1.000 *
3 R -1.000 *
4 Y -1.000 *
5 E -1.000 *
6 S -1.000 *
7 L -1.000 *
8 E -1.000 *
9 D -1.000 *
10 C -1.000 *
11 P -1.000 *
12 L -1.000 *
13 D -1.000 *
14 E -1.000 *
15 D -1.000 *
16 E -1.000 *
17 D -1.000 *
18 A -1.000 *
19 F -1.000 *
20 Q -1.000 *
21 G -1.000 *
22 L -1.000 *
23 G -1.000 *
24 E -1.000 *
25 E -1.000 *
26 D -1.000 *
27 E -1.000 *
28 E -1.000 *
29 I -1.000 *
30 D -1.000 *
31 Q -1.000 *
32 F -1.000 *
33 N -1.000 *
34 D -1.000 *
35 D -1.000 *
36 T -1.000 *
37 F -1.000 *
38 G -1.000 *
39 S -1.000 *
40 G -1.000 *
41 A -1.000 *
42 V -1.000 *
43 D -1.000 *
44 D -1.000 *
45 D -1.000 *
46 W -1.000 *
47 Q -1.000 *
48 E -1.000 *
49 A -1.000 *
50 H -1.000 *
51 E -1.000 *
52 R -1.000 *
53 L -1.000 *
54 A -1.000 *
55 E -1.000 *
56 L -1.000 *
57 E -1.000 *
58 E -1.000 *
59 K -1.000 *
60 L -1.000 *
61 P -1.000 *
62 V -1.000 *
63 A -1.000 *
64 V -1.000 *
65 N -1.000 *
66 E -1.000 *
67 Q -1.000 *
68 T -1.000 *
69 G -1.000 *
70 N -1.000 *
71 G -1.000 *
72 E -1.000 *
73 R -1.000 *
74 D -1.000 *
75 E -1.000 *
76 M -1.000 *
77 D -1.000 *
78 L -1.000 *
79 L -1.000 *
80 G -1.000 *
81 D -1.000 *
82 H -1.000 *
83 E -1.000 *
84 E -1.000 *
85 N -1.000 *
86 L -1.000 *
87 A -1.000 *
88 E -1.000 *
89 R -1.000 *
90 L -1.000 *
91 S -1.000 *
92 K -1.000 *
93 M -1.000 *
94 V -1.000 *
95 I -1.000 *
96 E -1.000 *
97 N -1.000 *
98 E -1.000 *
99 L -1.000 *
100 E -1.000 *
101 D -1.000 *
102 P -1.000 *
103 A -1.000 *
104 I -1.000 *
105 M -1.000 *
106 R -1.000 *
107 A -1.000 *
108 V -1.000 *
109 Q -1.000 *
110 T -1.000 *
111 R -1.000 *
112 P -1.000 *
113 V -1.000 *
114 L -1.000 *
115 Q -1.000 *
116 P -1.000 *
117 Q -1.000 *
118 P -1.000 *
119 G -1.000 *
120 S -1.000 *
121 L -1.000 *
122 N -1.000 *
123 S -1.000 *
124 S -1.000 *
125 I -1.000 *
126 W -1.000 *
127 D -1.000 *
128 G -1.000 *
129 S -1.000 *
130 E -1.000 *
131 V -1.000 *
132 L -1.000 *
133 R -1.000 *
134 R -1.000 *
135 I -1.000 *
136 R -1.000 *
137 G -1.000 *
138 P -1.000 *
139 L -1.000 *
140 L -1.000 *
141 A -1.000 *
142 Q -1.000 *
143 E -1.000 *
144 M -1.000 *
145 P -1.000 *
146 T -1.000 *
147 V -1.000 *
148 S -1.000 *
149 V -1.000 *
150 L -1.000 *
151 E -1.000 *
152 Y -1.000 *
153 A -1.000 *
154 L -1.000 *
155 P -1.000 *
156 Q -1.000 *
157 R -0.541
158 P -0.681
159 P -0.213
160 Q -0.443
161 G -0.711
162 P -0.351
163 E -0.653
164 D -0.478
165 D -0.530
166 R -0.720
167 D -0.402
168 L -0.546
169 S -0.610
170 E -0.621
171 R -0.780
172 A -0.544
173 L -0.471
174 P -0.377
175 R -0.462
176 R -0.601
177 S -0.228
178 T -0.604
179 S -0.338
180 P -0.475
181 I -0.639
182 I -0.492
183 G -0.448
184 S -0.721
185 P -0.172
186 P -0.130
187 V -0.573
188 R -0.621
189 A -0.596
190 V -0.495
191 P -0.608
192 I -0.757
193 G -0.566
194 T -0.506
195 P -0.567
196 P -0.254
197 K -0.248
198 Q -0.550
199 M -0.567
200 A -0.665
201 V -0.698
202 P -0.130
203 S -0.653
204 F -0.627
205 T -0.612
206 Q -0.545
207 Q -0.563
208 I -0.464
209 L -0.692
210 C -0.563
211 P -0.402
212 K -0.629
213 P -0.499
214 V -0.575
215 H -0.590
216 V -0.626
217 R -0.638
218 P -0.689
219 P -0.398
220 M -0.578
221 P -0.677
222 P -0.537
223 R -0.613
224 Y -0.821
225 P -0.520
226 A -0.635
227 P -0.325
228 Y -0.752
229 G -0.359
230 E -0.557
231 R -0.589
232 M -0.774
233 S -0.358
234 P -0.432
235 N -0.657
236 Q -0.556
237 L -0.578
238 C -0.703
239 S -0.682
240 V -0.681
241 P -0.702
242 N -0.658
243 S -0.594
244 S -0.662
245 L -0.748
246 L -0.708
247 G -0.457
248 H -0.755
249 P -0.603
250 F -0.633
251 P -0.601
252 P -0.345
253 S -0.469
254 V -0.792
255 P -0.596
256 P -0.471
257 V -0.590
258 L -0.577
259 S -0.409
260 P -0.425
261 L -0.811
262 Q -0.586
263 R -0.688
264 A -0.702
265 Q -0.677
266 L -0.678
267 L -0.674
268 G -0.646
269 G -0.711
270 A -0.816
271 Q -0.711
272 L -0.749
273 Q -0.661
274 P -0.450
275 G -0.647
276 R -0.833
277 M -0.642
278 S -0.517
279 P -0.203
280 S -0.762
281 Q -0.609
282 F -0.611
283 A -0.540
284 R -0.578
285 V -0.551
286 P -0.489
287 G -0.651
288 F -0.814
289 V -0.735
290 G -0.276
291 S -0.521
292 P -0.596
293 L -0.529
294 A -0.448
295 A -0.775
296 M -0.581
297 N -0.348
298 P -0.071
299 K -0.665
300 L -0.487
301 L -0.546
302 Q -0.488
303 G -0.662
304 R -0.447
305 V -0.672
306 G -0.436
307 Q -0.650
308 M -0.748
309 L -0.569
310 P -0.758
311 P -0.394
312 A -0.565
313 P -0.435
314 G -0.664
315 F -0.793
316 R -0.310
317 A -0.716
318 F -0.702
319 F -0.573
320 S -0.390
321 A -0.436
322 P -0.423
323 P -0.200
324 S -0.457
325 A -0.633
326 T -0.668
327 P -0.688
328 P -0.657
329 P -0.678
330 Q -0.722
331 Q -0.678
332 H -0.611
333 P -0.595
334 P -0.533
335 G -0.787
336 P -0.569
337 G -0.749
338 P -0.603
339 H -0.524
340 L -0.657
341 Q -0.746
342 N -0.606
343 L -0.564
344 R -0.596
345 S -0.529
346 Q -0.710
347 A -0.750
348 P -0.722
349 M -0.587
350 F -0.606
351 R -0.749
352 P -0.532
353 D -0.639
354 T -0.653
355 T -0.490
356 H -0.514
357 L -0.710
358 H -0.308
359 P -0.394
360 Q -0.585
361 H -0.614
362 R -0.521
363 R -0.419
364 L -0.847
365 L -0.573
366 H -0.591
367 Q -0.341
368 R -0.548
369 Q -0.800
370 Q -0.575
371 Q -0.558
372 N -0.696
373 R -0.541
374 S -0.772
375 Q -0.755
376 H -0.555
377 R -0.409
378 N -0.635
379 L -0.964
380 N -0.717
381 G -0.798
382 A -0.825
383 G -0.772
384 D -0.449
385 R -0.667
386 G -0.567
387 S -0.639
388 H -0.833
389 R -0.272
390 S -0.742
391 S -0.557
392 H -0.626
393 Q -0.758
394 D -0.654
395 H -0.561
396 L -0.736
397 R -0.619
398 K -0.582
399 D 0.130
400 P 0.147
401 Y 0.576
402 A 1.212
403 N 0.937
404 L 0.637
405 M 3.974
406 L 1.121
407 Q -0.447
408 R 0.142
409 E 3.481
410 K 2.112
411 D 1.042
412 W 1.009
413 V 2.877
414 S 0.633
415 K 2.195
416 I 1.624
417 Q 2.578
418 M 0.592
419 M 0.717
420 Q 1.371
421 L 0.980
422 Q 0.369
423 S 0.604
424 T 0.445
425 D 0.587
426 P 0.763
427 Y -0.357
428 L -0.221
429 D 1.962
430 D 4.585
431 F 3.905
432 Y 5.401
433 Y 1.974
434 Q 1.302
435 N 0.164
436 Y 1.085
437 F -0.144
438 E -0.126
439 K 0.557
440 L -0.018
441 E -0.173
442 K -0.009
443 L -0.397
444 S -0.141
445 A -0.173
446 A -0.068
447 E -0.329
448 E -0.348
449 I -0.664
450 Q -0.534
451 G -0.308
452 D -0.486
453 G -0.468
454 P -0.228
455 K -0.475
456 K -0.591
457 E -0.467
458 R -0.391
459 T -0.624
460 K -0.549
461 L -0.310
462 I -0.101
463 T -0.379
464 P -0.135
465 Q 0.127
466 V -0.357
467 A -0.126
468 K 0.191
469 L -0.426
470 E 0.549
471 H -0.301
472 A -0.106
473 Y -0.402
474 K 0.278
475 P 0.332
476 V -0.145
477 Q -0.337
478 F 0.833
479 E 1.278
480 G 1.686
481 S 2.794
482 L 3.304
483 G 5.358
484 K 2.372
485 L 1.800
486 T 1.026
487 V 0.011
488 S 0.732
489 S 2.109
490 V 0.312
491 N 0.326
492 N 0.829
493 P 4.319
494 R 2.366
495 K 1.233
496 M 1.165
497 I 2.774
498 D 1.236
499 A 1.556
500 V -0.203
501 V -0.401
502 T -0.169
503 S -0.194
504 R -0.387
505 S -0.406
506 E -0.128
507 D -0.482
508 D -0.463
509 E -0.640
510 T -0.557
511 K -0.327
512 E -0.485
513 K -0.360
514 Q -0.439
515 V -0.501
516 R -0.582
517 D -0.586
518 K 0.041
519 R 0.132
520 R 1.340
521 K -0.397
522 T 0.664
523 L 1.719
524 V -0.498
525 I -0.447
526 I 2.268
527 E 4.765
528 K 0.129
529 T 0.839
530 Y 1.632
531 S -0.608
532 L -0.363
533 L 1.380
534 L 2.459
535 D 0.565
536 V 1.277
537 E 1.935
538 D 1.092
539 Y -0.439
540 E -0.203
541 R 1.688
542 R -0.769
543 Y -0.743
544 L 0.009
545 L -0.383
546 S 0.116
547 L -0.350
548 E -0.685
549 E 0.126
550 E -0.004
551 R -0.391
552 P -0.595
553 A -0.843
554 L -0.688
555 M -0.837
556 D -0.414
557 D -0.235
558 R -0.215
559 K -0.255
560 H -0.612
561 K -0.499
562 I -0.080
563 C -0.231
564 S 0.260
565 M 0.298
566 Y -0.385
567 D 0.089
568 N -0.522
569 L 1.080
570 R -0.513
571 G -0.513
572 K -0.473
573 L -0.063
574 P -0.657
575 G -0.526
576 Q -0.568
577 E -0.016
578 R -0.623
579 P -0.408
580 S -0.113
581 D 0.027
582 D 0.025
583 H -0.322
584 F 2.182
585 V 0.762
586 Q 0.697
587 I 1.320
588 M 2.147
589 C 0.598
590 I 0.587
591 R 0.205
592 K 4.659
593 G 2.417
594 K 1.093
595 R 0.359
596 M 1.644
597 V 1.774
598 A 0.123
599 R 2.755
600 I 0.728
601 L 0.619
602 P 0.348
603 F 0.667
604 L 1.566
605 S -0.032
606 T -0.515
607 E -0.011
608 Q 0.253
609 A -0.247
610 A -0.178
611 D -0.245
612 I 1.944
613 L 0.761
614 M -0.372
615 T 0.170
616 T 1.222
617 A 0.928
618 R -0.573
619 N 0.850
620 L 1.713
621 P 0.366
622 F -0.126
623 L 2.725
624 I 0.170
625 K 0.355
626 K -0.115
627 D -0.209
628 A -0.665
629 Q -0.625
630 D 0.323
631 E -0.286
632 V -0.107
633 L -0.235
634 P -0.787
635 C -0.764
636 L 0.286
637 L -0.584
638 S -0.130
639 P -0.137
640 F -0.061
641 S -0.737
642 L -0.332
643 L -0.729
644 L 0.443
645 Y -0.687
646 H -0.531
647 L 0.791
648 P -0.586
649 S -0.585
650 V -0.821
651 S -0.509
652 I 1.160
653 T -0.574
654 S -0.560
655 L 0.348
656 L 0.160
657 R -0.150
658 Q -0.181
659 L -0.025
660 M 0.006
661 N -0.304
662 L -0.122
663 P 0.005
664 Q -0.486
665 S -0.416
666 A -0.193
667 A -0.132
668 T -0.376
669 P -0.482
670 A -0.431
671 L -0.116
672 S -0.303
673 N 0.209
674 P -0.650
675 H -0.390
676 L 0.396
677 T -0.361
678 A -0.608
679 V 1.379
680 L 0.598
681 Q 0.406
682 N 1.927
683 K 1.537
684 F 1.917
685 G 3.381
686 L 1.567
687 S 0.965
688 L 1.181
689 L 2.329
690 L 0.106
691 I 0.396
692 L 1.798
693 L 2.187
694 S 0.437
695 R 2.301
696 G 1.487
697 E 1.446
698 D -0.324
699 L 1.247
700 Q 0.290
701 S -0.027
702 S 0.232
703 D 0.080
704 P -0.320
705 A 0.185
706 T -0.298
707 E 0.033
708 S -0.278
709 T -0.421
710 Q 0.406
711 N -0.581
712 N 0.420
713 Q -0.392
714 W 1.871
715 T -0.508
716 E 0.356
717 V 0.611
718 M 1.225
719 F -0.434
720 M -0.341
721 A 0.980
722 T 0.241
723 R -0.094
724 E -0.167
725 L 2.063
726 L -1.000 *
727 R -1.000 *
728 I -1.000 *
729 P -1.000 *
730 Q -1.000 *
731 A -1.000 *
732 A -1.000 *
733 L -1.000 *
734 A -1.000 *
735 K -1.000 *
736 P -1.000 *
737 I -1.000 *
738 S -1.000 *
739 I -1.000 *
740 P -1.000 *
741 T -1.000 *
742 N -1.000 *
743 L -1.000 *
744 V -1.000 *
745 S -1.000 *
746 L -1.000 *
747 F -1.000 *
748 S -1.000 *
749 R -1.000 *
750 Y -1.000 *
751 V -1.000 *
752 D -1.000 *
753 R -1.000 *
754 Q -1.000 *
755 K -1.000 *
756 L -1.000 *
757 N -1.000 *
758 L -1.000 *
759 L -1.000 *
760 E -1.000 *
761 T -1.000 *
762 K -1.000 *
763 L -1.000 *
764 Q -1.000 *
765 L -1.000 *
766 V -1.000 *
767 Q -1.000 *
768 G -1.000 *
769 I -1.000 *
770 R -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 222.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MFRYESLEDC PLDEDEDAFQ GLGEEDEEID QFNDDTFGSG AVDDDWQEAH ERLAELEEKL
70 80 90 100 110 120
PVAVNEQTGN GERDEMDLLG DHEENLAERL SKMVIENELE DPAIMRAVQT RPVLQPQPGS
130 140 150 160 170 180
LNSSIWDGSE VLRRIRGPLL AQEMPTVSVL EYALPQRPPQ GPEDDRDLSE RALPRRSTSP
190 200 210 220 230 240
IIGSPPVRAV PIGTPPKQMA VPSFTQQILC PKPVHVRPPM PPRYPAPYGE RMSPNQLCSV
250 260 270 280 290 300
PNSSLLGHPF PPSVPPVLSP LQRAQLLGGA QLQPGRMSPS QFARVPGFVG SPLAAMNPKL
310 320 330 340 350 360
LQGRVGQMLP PAPGFRAFFS APPSATPPPQ QHPPGPGPHL QNLRSQAPMF RPDTTHLHPQ
370 380 390 400 410 420
HRRLLHQRQQ QNRSQHRNLN GAGDRGSHRS SHQDHLRKDP YANLMLQREK DWVSKIQMMQ
430 440 450 460 470 480
LQSTDPYLDD FYYQNYFEKL EKLSAAEEIQ GDGPKKERTK LITPQVAKLE HAYKPVQFEG
490 500 510 520 530 540
SLGKLTVSSV NNPRKMIDAV VTSRSEDDET KEKQVRDKRR KTLVIIEKTY SLLLDVEDYE
550 560 570 580 590 600
RRYLLSLEEE RPALMDDRKH KICSMYDNLR GKLPGQERPS DDHFVQIMCI RKGKRMVARI
610 620 630 640 650 660
LPFLSTEQAA DILMTTARNL PFLIKKDAQD EVLPCLLSPF SLLLYHLPSV SITSLLRQLM
670 680 690 700 710 720
NLPQSAATPA LSNPHLTAVL QNKFGLSLLL ILLSRGEDLQ SSDPATESTQ NNQWTEVMFM
730 740 750 760 770
ATRELLRIPQ AALAKPISIP TNLVSLFSRY VDRQKLNLLE TKLQLVQGIR
3D Structures in PDB
2XEQ (X-Ray,3.10 Å resolution)
Comments
Pat1 proteins play important roles in translational regulation, mRNA deadenylation, and mRNA decay. There are two Pat1 proteins in vertebrates: Pat1a and Pat1b, while in yeast and invertebrates, there is only one. Marnef et al. showed that Pat1b is a CRM1-dependent nucleocytoplasmic shuttling protein. It is located to P-bodies in cytoplasm and accumulates in splicing speckles and in nuclear foci. The export signal is from aa 86-95. NLS remains unidentified. Pat1a is not CRM1-dependent.
References
[1]. "RNA-related nuclear functions of human Pat1b, the P-body mRNA decay factor."
Marnef A, Weil D, Standart N. (2012)
Mol Biol Cell,
23:213-24
PubMedUser Input
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