Summary for Tgs1 LF (NES ID: 223)
Full Name
Trimethylguanosine synthase
UniProt Alternative Names
CLL-associated antigen KW-2
Cap-specific guanine-N2 methyltransferase
Hepatocellular carcinoma-associated antigen 137
Nuclear receptor coactivator 6-interacting protein
PRIP-interacting protein with methyltransferase motif (PIMT)
Organism
Homo sapiens (Human)
Experimental Evidence for CRM1-mediated Export
Mutations That Affect Nuclear Export
Mutations That Affect CRM1 Binding
Functional Export Signals
Undetermined
Secondary Structure of Export Signal
unknown (NES not included in PDB)
Other Residues Important for Export
Unknown
Sequence
Show FASTA Format
>gi|317373500|sp|Q96RS0.3|TGS1_HUMAN RecName: Full=Trimethylguanosine synthase; AltName: Full=CLL-associated antigen KW-2; AltName: Full=Cap-specific guanine-N2 methyltransferase; AltName: Full=Hepatocellular carcinoma-associated antigen 137; AltName: Full=Nuclear receptor coactivator 6-interacting protein; AltName: Full=PRIP-interacting protein with methyltransferase motif; Short=PIMT; Short=PIPMT
MCCEKWSRVAEMFLFIEEREDCKILCLCSRAFVEDRKLYNLGLKGYYIRDSGNNSGDQATEEEEGGYSCG
TAESHDSKGIGLDESELDSEAELMRSMGLPLQFGRITAHKDFEVSMNTRNKVKIKKKKHQKKYLDEIVQE
SWRKEYEEDDILASDDPSSIEQYENTRTYELQSKKDTETENPPVENTLSPKLEITEKWEKYWNEYGGGLL
WQSWQEKHPGQALSSEPWNFPDTKEEWEQHYSQLYWYYLEQFQYWEAQGWTFDASQSCDTDTYTSKTEAD
DKNDEKCMKVDLVSFPSSPIMVDNDSSGTSDKDHSEILDGISNIKLNSEEVTQSQLDSCTSHDGHQQLSE
VSSKRECPASGQSEPRNGGTNEESNSSGNTNTDPPAEDSQKSSGANTSKDRPHASGTDGDESEEDPPEHK
PSKLKRSHELDIDENPASDFDDSGSLLGFKYGSGQKYGGIPNFSHRQVRYLEKNVKLKSKYLDMRRQIKM
KNKHIFFTKESEKPFFKKSKILSKVEKFLTWVNKPMDEEASQESSSHDNVHDASTSSDSEEQDMSVKKGD
DLLETNNPEPEKCQSVSSAGELETENYERDSLLATVPDEQDCVTQEVPDSRQAETEAEVKKKKNKKKNKK
VNGLPPEIAAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCG
VGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPD
YATAETFDIRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKLKTITA
YFGDLIRRPASET
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 987630366765424334478815995311100262002158864201479999999752
Pred: CCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MCCEKWSRVAEMFLFIEEREDCKILCLCSRAFVEDRKLYNLGLKGYYIRDSGNNSGDQAT
10 20 30 40 50 60
Conf: 123587777876777887899884322509999998199731265444433012012334
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCC
AA: EEEEGGYSCGTAESHDSKGIGLDESELDSEAELMRSMGLPLQFGRITAHKDFEVSMNTRN
70 80 90 100 110 120
Conf: 310233243220357999865432101111236899982555420011112586665658
Pred: CCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
AA: KVKIKKKKHQKKYLDEIVQESWRKEYEEDDILASDDPSSIEQYENTRTYELQSKKDTETE
130 140 150 160 170 180
Conf: 999877789831222989999997279455400121089997899999997866899999
Pred: CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHH
AA: NPPVENTLSPKLEITEKWEKYWNEYGGGLLWQSWQEKHPGQALSSEPWNFPDTKEEWEQH
190 200 210 220 230 240
Conf: 999999999878764115840421587887766662012586775223346656689996
Pred: HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: YSQLYWYYLEQFQYWEAQGWTFDASQSCDTDTYTSKTEADDKNDEKCMKVDLVSFPSSPI
250 260 270 280 290 300
Conf: 446899999978711110134564358243301346754355887543224557867899
Pred: CCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MVDNDSSGTSDKDHSEILDGISNIKLNSEEVTQSQLDSCTSHDGHQQLSEVSSKRECPAS
310 320 330 340 350 360
Conf: 999889999965569999977899986311224898899999998999999989999998
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: GQSEPRNGGTNEESNSSGNTNTDPPAEDSQKSSGANTSKDRPHASGTDGDESEEDPPEHK
370 380 390 400 410 420
Conf: 874323344556779998810002212521078764389898766520000000002221
Pred: CCCCCCCCCCCCCCCCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCHHHCCCCCCCCH
AA: PSKLKRSHELDIDENPASDFDDSGSLLGFKYGSGQKYGGIPNFSHRQVRYLEKNVKLKSK
430 440 450 460 470 480
Conf: 356532102475520105799987322341367899875303998640000125788987
Pred: HHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
AA: YLDMRRQIKMKNKHIFFTKESEKPFFKKSKILSKVEKFLTWVNKPMDEEASQESSSHDNV
490 500 510 520 530 540
Conf: 888898873223565335899766679999865556888861000013466445789977
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: HDASTSSDSEEQDMSVKKGDDLLETNNPEPEKCQSVSSAGELETENYERDSLLATVPDEQ
550 560 570 580 590 600
Conf: 544447987022456899987420012321279992000136899999999753203588
Pred: CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
AA: DCVTQEVPDSRQAETEAEVKKKKNKKKNKKVNGLPPEIAAVPELAKYWAQRYRLFSRFDD
610 620 630 640 650 660
Conf: 700064730003979999999986410169972983035667347999722997999957
Pred: CEECCCCCEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEEC
AA: GIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDI
670 680 690 700 710 720
Conf: 999999999878872888739999474988863129949994799999998887533555
Pred: CHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
AA: DPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFDIR
730 740 750 760 770 780
Conf: 679999899999998003858899478999788986409998559999872881577866
Pred: CCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCEEEEEE
AA: TMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKLKTITA
790 800 810 820 830 840
Conf: 4288866999999
Pred: EECCCCCCCCCCC
AA: YFGDLIRRPASET
850
Show Conservation Score by AL2CO
1 M -1.000 *
2 C -1.000 *
3 C -1.000 *
4 E -1.000 *
5 K -1.000 *
6 W 0.781
7 S 0.170
8 R -0.225
9 V 1.121
10 A 2.276
11 E 1.137
12 M 0.899
13 F -0.181
14 L 1.418
15 F -0.294
16 I -0.777
17 E 0.460
18 E 0.043
19 R -0.373
20 E 0.300
21 D 0.341
22 C -1.235
23 K -0.558
24 I 1.325
25 L 0.056
26 C 2.276
27 L 1.049
28 C 2.276
29 S 1.420
30 R 2.276
31 A 1.320
32 F 0.996
33 V 0.874
34 E 0.071
35 D 2.276
36 R 1.313
37 K 0.254
38 L 1.322
39 Y 1.010
40 N -0.597
41 L 0.559
42 G 0.581
43 L 0.839
44 K 1.153
45 G 0.305
46 Y 0.064
47 Y 0.174
48 I -0.471
49 R -0.377
50 D -0.583
51 S -0.641
52 G -0.336
53 N -0.668
54 N -0.284
55 S -0.953
56 G 0.055
57 D 0.265
58 Q -0.593
59 A -1.003
60 T -0.614
61 E 0.178
62 E 0.458
63 E 0.004
64 E 0.183
65 G -0.790
66 G -0.690
67 Y -1.026
68 S -1.006
69 C -1.202
70 G -0.763
71 T -0.948
72 A -0.746
73 E -0.378
74 S -0.402
75 H -1.361
76 D -0.723
77 S 0.104
78 K -0.810
79 G -0.741
80 I -0.773
81 G -0.920
82 L -0.434
83 D 0.411
84 E 1.122
85 S -0.769
86 E 0.298
87 L 0.642
88 D 2.276
89 S 1.148
90 E 2.276
91 A 1.099
92 E 0.531
93 L 1.247
94 M 2.276
95 R 0.320
96 S 1.289
97 M 1.640
98 G 2.276
99 L 2.276
100 P 2.276
101 L 1.058
102 Q 0.526
103 F 2.276
104 G 1.569
105 R 0.329
106 I -0.700
107 T 1.069
108 A -0.582
109 H -0.215
110 K -0.365
111 D -0.707
112 F -0.336
113 E -0.222
114 V -0.184
115 S -0.193
116 M -0.737
117 N 0.147
118 T -0.646
119 R -0.190
120 N 0.234
121 K 0.078
122 V -0.900
123 K 0.176
124 I -0.468
125 K -0.504
126 K -0.797
127 K -0.051
128 K 0.547
129 H -0.402
130 Q -0.265
131 K -0.796
132 K 0.004
133 Y -0.013
134 L -0.578
135 D -0.622
136 E 0.058
137 I -0.558
138 V -0.754
139 Q -0.233
140 E 0.288
141 S -0.521
142 W -0.292
143 R -0.647
144 K -0.711
145 E -0.437
146 Y -1.069
147 E -0.269
148 E -0.279
149 D -0.415
150 D -0.508
151 I -1.123
152 L -0.858
153 A -1.094
154 S -0.583
155 D -0.483
156 D -0.488
157 P -0.080
158 S -0.760
159 S -0.559
160 I -0.958
161 E 0.101
162 Q -0.677
163 Y -1.026
164 E -0.058
165 N -1.008
166 T -0.792
167 R -0.644
168 T -0.415
169 Y -0.808
170 E -0.067
171 L -0.819
172 Q -0.742
173 S -0.839
174 K -0.370
175 K -0.780
176 D -0.663
177 T -1.160
178 E -0.680
179 T -0.678
180 E -0.458
181 N -0.868
182 P -0.727
183 P -0.863
184 V -0.886
185 E -0.262
186 N -0.620
187 T -0.886
188 L -0.490
189 S -0.679
190 P -0.550
191 K -0.534
192 L -0.316
193 E 0.092
194 I -0.099
195 T -0.704
196 E 0.255
197 K -0.764
198 W 2.276
199 E 0.354
200 K -0.115
201 Y 2.276
202 W 2.276
203 N -0.413
204 E -0.065
205 Y 0.764
206 G 1.755
207 G 0.290
208 G -0.016
209 L 1.757
210 L 1.276
211 W 2.276
212 Q 0.374
213 S 1.146
214 W 2.276
215 Q -0.037
216 E 1.233
217 K 0.563
218 H 0.725
219 P -0.332
220 G 0.055
221 Q -0.833
222 A -0.601
223 L -0.307
224 S -0.390
225 S -0.200
226 E 0.240
227 P 1.349
228 W 1.762
229 N 0.212
230 F -0.975
231 P 0.880
232 D 0.205
233 T 0.630
234 K 0.750
235 E -0.227
236 E -0.226
237 W 1.741
238 E 0.602
239 Q 0.216
240 H 1.035
241 Y 0.439
242 S 0.121
243 Q 0.223
244 L -0.460
245 Y 2.276
246 W 0.078
247 Y -0.478
248 Y 0.626
249 L -0.174
250 E 0.607
251 Q 0.627
252 F 1.183
253 Q -0.496
254 Y 1.027
255 W 1.386
256 E -0.338
257 A -0.047
258 Q 1.044
259 G 0.993
260 W 0.993
261 T 1.031
262 F -0.301
263 D -0.068
264 A -0.921
265 S -0.278
266 Q -0.548
267 S -0.517
268 C -0.769
269 D -0.776
270 T -0.959
271 D -0.306
272 T -1.044
273 Y -1.252
274 T -0.931
275 S -1.211
276 K -0.991
277 T -0.782
278 E 0.029
279 A -0.911
280 D -0.511
281 D -0.819
282 K -0.999
283 N -0.938
284 D -0.516
285 E -1.012
286 K -0.997
287 C -0.606
288 M -1.013
289 K -1.024
290 V -0.988
291 D -0.247
292 L -0.696
293 V -1.204
294 S -0.388
295 F -0.964
296 P -1.000
297 S -0.551
298 S -0.789
299 P -0.162
300 I -1.066
301 M -1.113
302 V -1.078
303 D -1.022
304 N -0.739
305 D -0.736
306 S -0.711
307 S -0.931
308 G -0.823
309 T -0.994
310 S -0.656
311 D -0.737
312 K -0.784
313 D -0.680
314 H -0.838
315 S -0.626
316 E -0.076
317 I -0.304
318 L -0.488
319 D -0.931
320 G -0.690
321 I -0.287
322 S -0.617
323 N -0.318
324 I -0.299
325 K -0.691
326 L -0.135
327 N -0.524
328 S -0.696
329 E -0.434
330 E -0.547
331 V -0.940
332 T -0.382
333 Q -0.569
334 S -0.984
335 Q -0.636
336 L -0.691
337 D -0.883
338 S -0.535
339 C -0.860
340 T -0.737
341 S -0.817
342 H -1.221
343 D -0.871
344 G -0.813
345 H -1.257
346 Q -0.254
347 Q -1.313
348 L -0.598
349 S -0.934
350 E -0.921
351 V -0.769
352 S -1.259
353 S -1.065
354 K -1.074
355 R -0.276
356 E -0.867
357 C -0.793
358 P -0.545
359 A -0.678
360 S -0.804
361 G -0.247
362 Q -0.779
363 S -0.826
364 E -0.169
365 P 0.046
366 R -0.721
367 N 0.133
368 G -0.379
369 G -0.137
370 T -0.717
371 N -0.831
372 E 0.101
373 E -0.557
374 S -1.077
375 N -0.950
376 S -1.171
377 S -0.587
378 G -0.766
379 N -0.909
380 T -0.939
381 N -0.913
382 T -1.054
383 D -0.831
384 P -1.169
385 P -1.043
386 A -0.860
387 E -0.945
388 D -0.796
389 S -0.932
390 Q -0.874
391 K -1.071
392 S -0.892
393 S -0.601
394 G -0.956
395 A -1.151
396 N -0.526
397 T -1.196
398 S -0.971
399 K -1.265
400 D -0.806
401 R -1.190
402 P -1.039
403 H -1.120
404 A -1.159
405 S -1.258
406 G -1.088
407 T -0.907
408 D -0.523
409 G -0.120
410 D -0.242
411 E -0.019
412 S -0.225
413 E -0.011
414 E 0.078
415 D -0.140
416 P 0.508
417 P 0.192
418 E -0.234
419 H -0.961
420 K 0.146
421 P -0.892
422 S -0.546
423 K 0.093
424 L -0.200
425 K 0.672
426 R 0.053
427 S 0.165
428 H -0.138
429 E 0.036
430 L 0.232
431 D 0.315
432 I -1.167
433 D 0.897
434 E 0.243
435 N -0.538
436 P 0.089
437 A -1.228
438 S -0.875
439 D -0.517
440 F -0.705
441 D -0.491
442 D -0.468
443 S -0.495
444 G -0.688
445 S -0.905
446 L -0.932
447 L 0.304
448 G 0.933
449 F 0.499
450 K -0.833
451 Y -0.407
452 G 0.062
453 S -0.513
454 G -0.603
455 Q -0.675
456 K -0.271
457 Y -0.299
458 G -0.489
459 G -0.424
460 I -0.165
461 P -0.854
462 N -0.459
463 F 0.427
464 S 0.029
465 H -0.642
466 R -0.295
467 Q -0.961
468 V -0.388
469 R -0.925
470 Y -0.135
471 L -0.573
472 E -0.559
473 K 0.618
474 N -0.663
475 V -0.738
476 K 0.290
477 L -0.954
478 K -0.424
479 S 0.057
480 K -0.329
481 Y -0.818
482 L 0.167
483 D 0.102
484 M -0.483
485 R 0.000
486 R -0.117
487 Q -0.444
488 I -0.725
489 K -0.905
490 M -1.033
491 K -0.017
492 N -0.096
493 K 0.491
494 H 0.533
495 I 0.342
496 F -0.255
497 F 1.259
498 T -0.173
499 K 0.432
500 E 0.077
501 S -0.251
502 E -0.599
503 K -0.781
504 P -1.070
505 F -1.290
506 F -0.963
507 K -0.609
508 K -0.767
509 S 0.097
510 K -0.806
511 I -0.291
512 L 0.447
513 S -0.893
514 K -0.386
515 V -0.080
516 E 0.237
517 K -0.891
518 F 0.506
519 L 0.429
520 T -0.492
521 W -0.438
522 V -0.419
523 N -0.462
524 K -0.185
525 P -0.672
526 M -0.976
527 D -0.693
528 E -0.492
529 E -0.901
530 A -0.914
531 S -0.938
532 Q -0.724
533 E -0.890
534 S -0.936
535 S -0.948
536 S -0.928
537 H -0.846
538 D -0.524
539 N -0.693
540 V -0.714
541 H -1.040
542 D -0.781
543 A -0.586
544 S -0.468
545 T -0.594
546 S -0.728
547 S -0.638
548 D -0.475
549 S -0.855
550 E -0.101
551 E -0.812
552 Q -0.885
553 D -0.700
554 M -1.379
555 S -1.052
556 V -0.817
557 K -0.887
558 K -0.958
559 G -1.344
560 D -0.350
561 D -0.830
562 L -1.109
563 L -1.240
564 E -0.699
565 T -1.151
566 N -0.862
567 N -1.174
568 P -1.211
569 E -0.470
570 P -0.961
571 E -0.979
572 K -1.047
573 C -1.306
574 Q -1.190
575 S -1.069
576 V -1.176
577 S -0.960
578 S -0.961
579 A -1.073
580 G -1.042
581 E -0.961
582 L -1.260
583 E -1.040
584 T -1.070
585 E -0.783
586 N -0.790
587 Y -1.397
588 E -0.795
589 R -1.218
590 D -1.018
591 S -1.087
592 L -1.306
593 L -1.081
594 A -1.046
595 T -0.774
596 V -0.793
597 P -1.048
598 D -0.938
599 E -1.300
600 Q -0.620
601 D -0.653
602 C -0.951
603 V -0.973
604 T -0.835
605 Q -0.857
606 E -0.640
607 V -1.177
608 P -0.649
609 D -0.876
610 S -1.275
611 R -0.955
612 Q -0.770
613 A -0.944
614 E -0.825
615 T -1.120
616 E -0.844
617 A -1.141
618 E -0.957
619 V -1.140
620 K -0.559
621 K -0.813
622 K -0.970
623 K -0.798
624 N -0.850
625 K -0.194
626 K -0.985
627 K -0.641
628 N -0.811
629 K -0.406
630 K -0.833
631 V -1.294
632 N -1.133
633 G -0.958
634 L -0.461
635 P 0.770
636 P -0.477
637 E 0.264
638 I 0.281
639 A -0.062
640 A -0.261
641 V -0.047
642 P 0.212
643 E -0.264
644 L 1.117
645 A -0.805
646 K 2.276
647 Y 1.876
648 W 2.276
649 A -0.278
650 Q 1.256
651 R 2.276
652 Y 1.330
653 R 1.198
654 L 2.276
655 F 2.276
656 S 1.373
657 R 1.099
658 F 2.276
659 D 2.276
660 D 0.090
661 G 2.276
662 I 1.642
663 K 0.812
664 L 1.179
665 D 1.878
666 R 0.138
667 E 2.276
668 G 1.413
669 W 2.276
670 F 1.452
671 S 2.276
672 V 2.276
673 T 2.276
674 P 2.276
675 E 2.276
676 K 0.182
677 I 1.096
678 A 2.276
679 E -0.114
680 H 1.716
681 I 0.388
682 A 2.276
683 G -1.059
684 R 1.512
685 V 1.036
686 S -0.766
687 Q 0.084
688 S 0.343
689 F 0.791
690 K -0.877
691 C -0.168
692 D -0.072
693 V 0.430
694 V 0.974
695 V 1.369
696 D 2.276
697 A 0.853
698 F 2.276
699 C 1.462
700 G 2.276
701 V 0.703
702 G 2.276
703 G 2.276
704 N 2.276
705 T 0.626
706 I 2.276
707 Q 1.716
708 F 1.749
709 A 2.276
710 L -0.020
711 T 0.252
712 G 0.008
713 M -0.054
714 R 0.410
715 V 2.276
716 I 0.366
717 A 1.285
718 I 1.360
719 D 2.276
720 I 1.722
721 D 1.727
722 P 1.173
723 V -0.708
724 K 1.419
725 I 1.370
726 A -0.241
727 L 0.124
728 A 2.276
729 R 0.298
730 N 0.980
731 N 2.276
732 A 1.277
733 E -0.295
734 V 1.394
735 Y 2.276
736 G 0.843
737 I 1.102
738 A -0.165
739 D 0.657
740 K 0.069
741 I 1.235
742 E 0.962
743 F 1.722
744 I 0.633
745 C -0.445
746 G 2.276
747 D 1.720
748 F 1.587
749 L 0.293
750 L -0.747
751 L 1.114
752 A 1.575
753 S -0.208
754 F -1.036
755 L 1.065
756 K -0.363
757 A 1.426
758 D 1.623
759 V 0.275
760 V 1.559
761 F 2.276
762 L 1.618
763 S 2.276
764 P 2.276
765 P 2.276
766 W 2.276
767 G 2.276
768 G 2.276
769 P 1.717
770 D -0.020
771 Y 2.276
772 A -0.016
773 T 0.218
774 A -0.100
775 E 0.200
776 T 0.529
777 F 1.377
778 D 1.155
779 I 0.623
780 R -0.280
781 T 0.466
782 M 0.768
783 M 0.576
784 S -1.048
785 P 0.680
786 D 0.450
787 G 1.082
788 F -0.368
789 E -0.506
790 I 0.617
791 F 0.771
792 R 0.051
793 L -0.440
794 S 0.951
795 K 0.325
796 K -0.661
797 I 1.068
798 T 0.635
799 N -0.368
800 N 0.472
801 I 1.371
802 V 0.421
803 Y 0.327
804 F 1.462
805 L 0.917
806 P 2.276
807 R 2.276
808 N 2.276
809 A 0.322
810 D 0.994
811 I -0.207
812 D 0.078
813 Q 1.722
814 V 0.838
815 A 0.367
816 S 0.182
817 L 1.115
818 A 0.602
819 G 0.076
820 P 0.464
821 G 0.694
822 G 1.028
823 Q -0.350
824 V 0.738
825 E 2.276
826 I 1.354
827 E 2.276
828 Q 1.442
829 N 0.871
830 F 0.797
831 L 1.242
832 N 1.396
833 N 0.286
834 K 1.413
835 L 0.797
836 K 1.054
837 T 1.041
838 I 0.592
839 T 1.703
840 A 1.473
841 Y 2.276
842 F 1.367
843 G 1.257
844 D 0.104
845 L 1.259
846 I 0.206
847 R 0.310
848 R -0.521
849 P -0.104
850 A -0.636
851 S 0.440
852 E -1.000 *
853 T -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 223.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MCCEKWSRVA EMFLFIEERE DCKILCLCSR AFVEDRKLYN LGLKGYYIRD SGNNSGDQAT
70 80 90 100 110 120
EEEEGGYSCG TAESHDSKGI GLDESELDSE AELMRSMGLP LQFGRITAHK DFEVSMNTRN
130 140 150 160 170 180
KVKIKKKKHQ KKYLDEIVQE SWRKEYEEDD ILASDDPSSI EQYENTRTYE LQSKKDTETE
190 200 210 220 230 240
NPPVENTLSP KLEITEKWEK YWNEYGGGLL WQSWQEKHPG QALSSEPWNF PDTKEEWEQH
250 260 270 280 290 300
YSQLYWYYLE QFQYWEAQGW TFDASQSCDT DTYTSKTEAD DKNDEKCMKV DLVSFPSSPI
310 320 330 340 350 360
MVDNDSSGTS DKDHSEILDG ISNIKLNSEE VTQSQLDSCT SHDGHQQLSE VSSKRECPAS
370 380 390 400 410 420
GQSEPRNGGT NEESNSSGNT NTDPPAEDSQ KSSGANTSKD RPHASGTDGD ESEEDPPEHK
430 440 450 460 470 480
PSKLKRSHEL DIDENPASDF DDSGSLLGFK YGSGQKYGGI PNFSHRQVRY LEKNVKLKSK
490 500 510 520 530 540
YLDMRRQIKM KNKHIFFTKE SEKPFFKKSK ILSKVEKFLT WVNKPMDEEA SQESSSHDNV
550 560 570 580 590 600
HDASTSSDSE EQDMSVKKGD DLLETNNPEP EKCQSVSSAG ELETENYERD SLLATVPDEQ
610 620 630 640 650 660
DCVTQEVPDS RQAETEAEVK KKKNKKKNKK VNGLPPEIAA VPELAKYWAQ RYRLFSRFDD
670 680 690 700 710 720
GIKLDREGWF SVTPEKIAEH IAGRVSQSFK CDVVVDAFCG VGGNTIQFAL TGMRVIAIDI
730 740 750 760 770 780
DPVKIALARN NAEVYGIADK IEFICGDFLL LASFLKADVV FLSPPWGGPD YATAETFDIR
790 800 810 820 830 840
TMMSPDGFEI FRLSKKITNN IVYFLPRNAD IDQVASLAGP GGQVEIEQNF LNNKLKTITA
850
YFGDLIRRPA SET
3D Structures in PDB
3GDH (X-Ray,2.00 Å resolution)
Comments
Transport of C/D snoRNPs to nucleoli involves CRM1. Pradet-Balade et al. proposed that CRM1 controls the composition of snoRNP by the removal of Tgs1 from it. Tgs1 is the enzyme required for the m7G-cap hypermethylation of snRNA and snoRNA. Tgs1 exists as two isoforms in HeLa cells. Pradet-Balade et al. showed that the long form of Tgs1 contains a CRM1 dependent export signal and shuttles. They also showed that Tgs1 long form interacts directly with CRM1 in vivo using recombinant proteins.
References
[1]. "CRM1 controls the composition of nucleoplasmic pre-snoRNA complexes to licence them for nucleolar transport"
Pradet-Balade B, Girard C, Boulon S, Paul C, Azzag K, Bordonné R, Bertrand E, Verheggen C. (2011)
EMBO J,
30:2205-18
PubMedUser Input
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