Show FASTA Format
>gi|118573073|sp|Q9H9S0.2|NANOG_HUMAN RecName: Full=Homeobox protein NANOG; AltName: Full=Homeobox transcription factor Nanog; Short=hNanog
MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSST
SPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK
TWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSSYHQGCLVNPTGNLPMWSNQTWNNSTWSNQT
QNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQT
TRYFSTPQTMDLFLNYSMNMQPEDV
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 988999999999998999999999988899999998867999999999888999998687
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
10 20 30 40 50 60
Conf: 566899999999999999312221001588875444544323146799998977776403
Pred: CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
AA: LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
70 80 90 100 110 120
Conf: 999999999970781898999861101355654313799999999888999999998877
Pred: CHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
AA: SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS
130 140 150 160 170 180
Conf: 566877899999999999999999865333489988989889988888878988889999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
190 200 210 220 230 240
Conf: 989988646423569999953079988750288720234552147134531024778899
Pred: CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC
AA: YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
250 260 270 280 290 300
Conf: 99999
Pred: CCCCC
AA: QPEDV
Show Conservation Score by AL2CO
1 M -1.000 *
2 S -1.000 *
3 V -1.000 *
4 D -1.000 *
5 P -1.000 *
6 A -1.000 *
7 C -1.000 *
8 P -1.000 *
9 Q -1.000 *
10 S -1.000 *
11 L -1.000 *
12 P -1.000 *
13 C -1.000 *
14 F -1.000 *
15 E -1.000 *
16 A -1.000 *
17 S -1.000 *
18 D -1.000 *
19 C -1.000 *
20 K -1.000 *
21 E -0.387
22 S -0.201
23 S -0.207
24 P 0.177
25 M -0.654
26 P -0.169
27 V -0.457
28 I -0.508
29 C -0.463
30 G -0.422
31 P -0.228
32 E -0.337
33 E -0.407
34 N -0.475
35 Y -0.580
36 P -0.405
37 S -0.583
38 L -0.598
39 Q -0.319
40 M -0.596
41 S -0.456
42 S -0.451
43 A -0.517
44 E -0.528
45 M -0.676
46 P -0.499
47 H -0.720
48 T -0.660
49 E -0.563
50 T -0.611
51 V -0.583
52 S -0.624
53 P -0.408
54 L -0.731
55 P -0.573
56 S -0.657
57 S -0.681
58 M -0.798
59 D -0.639
60 L -0.722
61 L -0.700
62 I -0.728
63 Q -0.628
64 D -0.722
65 S -0.625
66 P -0.451
67 D -0.306
68 S -0.584
69 S -0.543
70 T -0.596
71 S -0.497
72 P -0.516
73 K -0.641
74 G -0.690
75 K -0.599
76 Q -0.501
77 P -0.512
78 T -0.617
79 S -0.651
80 A -0.735
81 E -0.563
82 K -0.522
83 S -0.658
84 V -0.617
85 A -0.635
86 K -0.527
87 K -0.586
88 E -0.445
89 D -0.317
90 K -0.296
91 V -0.582
92 P -0.388
93 V -0.407
94 K 0.124
95 K -0.265
96 Q 0.192
97 K 1.805
98 T -0.100
99 R 2.158
100 T 1.858
101 V 0.636
102 F 2.308
103 S 2.079
104 S 0.039
105 T -0.467
106 Q 3.163
107 L 1.119
108 C -0.464
109 V 0.200
110 L 3.221
111 N 0.997
112 D 0.286
113 R 0.543
114 F 2.631
115 Q 0.035
116 R -0.378
117 Q 0.676
118 K 1.015
119 Y 3.151
120 L 1.706
121 S 0.730
122 L 0.188
123 Q -0.124
124 Q 0.604
125 M 1.792
126 Q 0.009
127 E 0.052
128 L 1.541
129 S 2.514
130 N -0.150
131 I -0.167
132 L 1.326
133 N 0.168
134 L 2.436
135 S 1.636
136 Y 0.496
137 K 0.616
138 Q 2.713
139 V 2.111
140 K 1.638
141 T 1.847
142 W 2.771
143 F 2.061
144 Q 2.052
145 N 2.855
146 Q 1.496
147 R 2.850
148 M 0.588
149 K 2.360
150 S -0.289
151 K 2.147
152 R 2.379
153 W -0.465
154 Q -0.328
155 K -0.165
156 N -0.555
157 N -0.211
158 W -0.490
159 P -0.541
160 K -0.423
161 N -0.484
162 S -0.565
163 N -0.602
164 G -0.642
165 V -0.599
166 T -0.648
167 Q -0.697
168 K -0.599
169 A -0.516
170 S -0.685
171 A -0.610
172 P -0.496
173 T -0.531
174 Y -0.629
175 P -0.425
176 S -0.585
177 L -0.621
178 Y -0.705
179 S -0.609
180 S -0.493
181 Y -0.647
182 H -0.688
183 Q -0.671
184 G -0.650
185 C -0.709
186 L -0.670
187 V -0.666
188 N -0.562
189 P -0.546
190 T -0.526
191 G -0.482
192 N -0.465
193 L -0.570
194 P -0.302
195 M -0.589
196 W -0.608
197 S -0.391
198 N -0.307
199 Q -0.602
200 T -0.527
201 W -0.528
202 N -0.281
203 N -0.175
204 S -0.302
205 T -0.291
206 W -0.444
207 S -0.401
208 N -0.376
209 Q -0.420
210 T -0.322
211 Q -0.591
212 N -0.278
213 I -0.507
214 Q -0.260
215 S -0.155
216 W -0.325
217 S -0.404
218 N -0.518
219 H -0.442
220 S -0.096
221 W -1.000 *
222 N -1.000 *
223 T -1.000 *
224 Q -1.000 *
225 T -1.000 *
226 W -1.000 *
227 C -1.000 *
228 T -1.000 *
229 Q -1.000 *
230 S -1.000 *
231 W -1.000 *
232 N -1.000 *
233 N -1.000 *
234 Q -1.000 *
235 A -1.000 *
236 W -1.000 *
237 N -1.000 *
238 S -1.000 *
239 P -1.000 *
240 F -1.000 *
241 Y -1.000 *
242 N -1.000 *
243 C -1.000 *
244 G -1.000 *
245 E -1.000 *
246 E -1.000 *
247 S -1.000 *
248 L -1.000 *
249 Q -1.000 *
250 S -1.000 *
251 C -1.000 *
252 M -1.000 *
253 Q -1.000 *
254 F -1.000 *
255 Q -1.000 *
256 P -1.000 *
257 N -1.000 *
258 S -1.000 *
259 P -1.000 *
260 A -1.000 *
261 S -1.000 *
262 D -1.000 *
263 L -1.000 *
264 E -1.000 *
265 A -1.000 *
266 A -1.000 *
267 L -1.000 *
268 E -1.000 *
269 A -1.000 *
270 A -1.000 *
271 G -1.000 *
272 E -1.000 *
273 G -1.000 *
274 L -1.000 *
275 N -1.000 *
276 V -1.000 *
277 I -1.000 *
278 Q -1.000 *
279 Q -1.000 *
280 T -1.000 *
281 T -1.000 *
282 R -1.000 *
283 Y -1.000 *
284 F -1.000 *
285 S -1.000 *
286 T -1.000 *
287 P -1.000 *
288 Q -1.000 *
289 T -1.000 *
290 M -1.000 *
291 D -1.000 *
292 L -1.000 *
293 F -1.000 *
294 L -1.000 *
295 N -1.000 *
296 Y -1.000 *
297 S -1.000 *
298 M -1.000 *
299 N -1.000 *
300 M -1.000 *
301 Q -1.000 *
302 P -1.000 *
303 E -1.000 *
304 D -1.000 *
305 V -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 224.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MSVDPACPQS LPCFEASDCK ESSPMPVICG PEENYPSLQM SSAEMPHTET VSPLPSSMDL
70 80 90 100 110 120
LIQDSPDSST SPKGKQPTSA EKSVAKKEDK VPVKKQKTRT VFSSTQLCVL NDRFQRQKYL
130 140 150 160 170 180
SLQQMQELSN ILNLSYKQVK TWFQNQRMKS KRWQKNNWPK NSNGVTQKAS APTYPSLYSS
190 200 210 220 230 240
YHQGCLVNPT GNLPMWSNQT WNNSTWSNQT QNIQSWSNHS WNTQTWCTQS WNNQAWNSPF
250 260 270 280 290 300
YNCGEESLQS CMQFQPNSPA SDLEAALEAA GEGLNVIQQT TRYFSTPQTM DLFLNYSMNM
QPEDV
2KT0 (NMR)
2VI6 (X-Ray,2.60 Å resolution)
NANOG is a homeodomain-containing protein transcription factor that is involved in both pluripotency and tumorigenesis. It has been shown to contain two NLSs in the homeodomain. Park et al. showed that the homeodomain also harbors one NES.
[1]. "Identification of a putative nuclear export signal motif in human NANOG homeobox domain."
Park SW, Do HJ, Huh SH, Sung B, Uhm SJ, Song H, Kim NH, Kim JH (2012)
Biochem Biophys Res Commun,
421:484-9
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.