Capsid-binding protein UL94
UniProt
Show FASTA Format
>gi|136987|sp|P16800.1|UL16_HCMVA RecName: Full=Capsid-binding protein UL94; AltName: Full=Tegument protein UL94
MAWRSGLCETDSRTLKQFLQEECMWKLVGKSRKHREYRAVACRSTIFSPEDDSSCILCQLLLLYRDGEWI
ICFCCNGRYQGHYGVNHVHRRRRRICHLPTLYQLSFGGPLGPASIDFLPSFSQVTSSMTCDGITPDVIYE
VCMLVPQDEAKRILVKGHGAMDLTCQKAVTLGGAGAWLLPRPEGYTLFFYILCYDLFTSCGNRCDIPSMT
RLMAAATACGQAGCSFCTDHEGHVDPTGNYVGCTPDMGRCLCYVPCGPMTQSLIHNEEPATFFCESDDAK
YLCAVGSKTAAQVTLGDGLDYHIGVKDSEGRWLPVKTDVWDLVKVEEPVSRMIVCSCPVLKNLVH
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 976668640113999987413201899188665059997310033121699996159999
Pred: CCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCEECCCCCCCEEEEEE
AA: MAWRSGLCETDSRTLKQFLQEECMWKLVGKSRKHREYRAVACRSTIFSPEDDSSCILCQL
10 20 30 40 50 60
Conf: 998637930999996892435676430469998635999249995169877886688898
Pred: EEEEECCCEEEEEEECCEEEEEEEECCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCC
AA: LLLYRDGEWIICFCCNGRYQGHYGVNHVHRRRRRICHLPTLYQLSFGGPLGPASIDFLPS
70 80 90 100 110 120
Conf: 778998898899992012301332594433322140799875345310451550168711
Pred: CCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEECC
AA: FSQVTSSMTCDGITPDVIYEVCMLVPQDEAKRILVKGHGAMDLTCQKAVTLGGAGAWLLP
130 140 150 160 170 180
Conf: 899825999983146322124888987299999999817999977677999974679981
Pred: CCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
AA: RPEGYTLFFYILCYDLFTSCGNRCDIPSMTRLMAAATACGQAGCSFCTDHEGHVDPTGNY
190 200 210 220 230 240
Conf: 146899995102215899866831268871123334886047983045566667778742
Pred: CCCCCCCCCCEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCC
AA: VGCTPDMGRCLCYVPCGPMTQSLIHNEEPATFFCESDDAKYLCAVGSKTAAQVTLGDGLD
250 260 270 280 290 300
Conf: 379898799957617889814985192124677626444552049
Pred: EEEEEECCCCCEEECCCCCCEEEECCCHHHHHHHHCCHHHHHCCC
AA: YHIGVKDSEGRWLPVKTDVWDLVKVEEPVSRMIVCSCPVLKNLVH
310 320 330 340
Show Conservation Score by AL2CO
1 M -1.000 *
2 A -1.000 *
3 W -1.000 *
4 R -1.000 *
5 S -1.000 *
6 G -0.222
7 L -0.658
8 C 0.898
9 E 0.207
10 T -0.161
11 D 0.226
12 S 0.848
13 R 0.354
14 T -0.706
15 L 1.056
16 K 0.944
17 Q -0.770
18 F 2.193
19 L 1.847
20 Q 1.132
21 E 0.251
22 E 2.195
23 C 2.692
24 M 0.117
25 W 3.267
26 K 0.141
27 L -0.744
28 V 0.474
29 G -0.910
30 K 0.092
31 S 0.049
32 R -0.723
33 K -0.497
34 H -0.802
35 R 1.682
36 E 1.060
37 Y 1.709
38 R -0.366
39 A 1.381
40 V 0.700
41 A 0.894
42 C 0.670
43 R -0.590
44 S 2.024
45 T 0.788
46 I -0.868
47 F 0.030
48 S -0.319
49 P 0.198
50 E -0.923
51 D -0.731
52 D -0.563
53 S -0.626
54 S -1.030
55 C -0.485
56 I -0.078
57 L -0.145
58 C -0.149
59 Q -1.024
60 L 0.211
61 L 0.558
62 L 0.723
63 L 1.096
64 Y 0.357
65 R 1.250
66 D -0.411
67 G -0.899
68 E -0.857
69 W -0.863
70 I -0.519
71 I 0.283
72 C 0.685
73 F 0.340
74 C -0.461
75 C 0.138
76 N 2.078
77 G 1.338
78 R -0.836
79 Y -0.335
80 Q -0.408
81 G -0.176
82 H -0.440
83 Y 0.019
84 G -1.171
85 V 0.235
86 N -0.919
87 H -0.892
88 V -0.011
89 H -0.924
90 R 0.156
91 R -0.929
92 R -0.155
93 R -1.153
94 R -1.077
95 I -0.489
96 C -0.717
97 H -0.381
98 L -0.138
99 P -1.174
100 T -1.336
101 L -0.981
102 Y 0.261
103 Q -1.087
104 L 0.220
105 S -1.244
106 F 0.335
107 G -0.560
108 G -0.274
109 P -0.603
110 L -0.323
111 G -1.114
112 P 0.565
113 A -0.596
114 S -0.937
115 I -0.689
116 D -1.027
117 F -0.689
118 L -0.479
119 P 2.236
120 S -0.978
121 F -0.644
122 S -0.634
123 Q -0.678
124 V -0.576
125 T -0.954
126 S -0.322
127 S -0.882
128 M -0.764
129 T -0.728
130 C -0.967
131 D -1.002
132 G -0.964
133 I 0.062
134 T -0.206
135 P -0.334
136 D -0.891
137 V -0.627
138 I 0.285
139 Y 0.076
140 E -0.396
141 V 0.149
142 C 1.158
143 M 0.041
144 L -0.191
145 V 1.343
146 P -0.572
147 Q -0.646
148 D -0.056
149 E 1.280
150 A 0.011
151 K -0.402
152 R -0.917
153 I 0.154
154 L -0.828
155 V -0.732
156 K 0.181
157 G 0.009
158 H -0.634
159 G 0.759
160 A -0.618
161 M -0.656
162 D -0.254
163 L -0.975
164 T -0.565
165 C -0.868
166 Q -0.887
167 K -0.902
168 A -0.521
169 V -0.125
170 T -0.406
171 L 0.571
172 G 0.529
173 G 0.783
174 A -0.363
175 G 0.919
176 A 0.238
177 W 3.267
178 L -0.480
179 L -0.187
180 P -0.683
181 R -0.694
182 P -0.211
183 E -0.206
184 G -0.153
185 Y -0.225
186 T -0.461
187 L 1.234
188 F 0.567
189 F -0.614
190 Y 1.035
191 I -0.254
192 L 1.344
193 C -0.777
194 Y -0.894
195 D 2.024
196 L 0.328
197 F -0.071
198 T -0.084
199 S -0.569
200 C 2.067
201 G 0.364
202 N -0.188
203 R -0.563
204 C -1.267
205 D -1.240
206 I -0.068
207 P 1.412
208 S 1.912
209 M 1.433
210 T 0.356
211 R 0.134
212 L 0.436
213 M 0.022
214 A 0.110
215 A -0.444
216 A 0.012
217 T 1.303
218 A -0.697
219 C 2.692
220 G -0.046
221 Q -0.611
222 A -0.958
223 G -0.566
224 C 3.267
225 S -0.801
226 F -0.526
227 C 2.712
228 T -0.717
229 D 1.026
230 H -0.728
231 E 0.176
232 G -0.489
233 H 3.267
234 V 1.463
235 D 0.025
236 P 0.209
237 T -0.709
238 G -0.102
239 N -0.383
240 Y -0.167
241 V -0.214
242 G 0.013
243 C -0.013
244 T -0.258
245 P -0.498
246 D -0.220
247 M -0.730
248 G 0.278
249 R -0.873
250 C 3.267
251 L 1.108
252 C 3.267
253 Y 0.056
254 V -0.369
255 P 0.752
256 C 3.267
257 G -0.593
258 P -0.835
259 M -1.302
260 T -1.065
261 Q -1.491
262 S -0.762
263 L -0.681
264 I 0.204
265 H -0.676
266 N -0.230
267 E -0.977
268 E -1.039
269 P -0.170
270 A -0.574
271 T -0.441
272 F 0.865
273 F 0.805
274 C 0.004
275 E 0.230
276 S -0.690
277 D -0.209
278 D -0.929
279 A -0.563
280 K -1.119
281 Y -0.935
282 L -1.006
283 C -1.466
284 A -0.748
285 V -0.502
286 G -0.719
287 S -0.498
288 K -0.109
289 T -1.021
290 A -1.135
291 A -0.431
292 Q -0.767
293 V -0.762
294 T -0.968
295 L -0.304
296 G -0.447
297 D -1.151
298 G -1.125
299 L -0.183
300 D -0.381
301 Y -0.565
302 H -0.274
303 I -0.705
304 G 0.107
305 V 0.411
306 K -0.551
307 D 0.171
308 S -0.201
309 E -0.236
310 G 3.267
311 R -0.519
312 W -0.199
313 L 0.906
314 P -0.348
315 V -0.255
316 K -0.087
317 T -0.961
318 D -0.781
319 V -0.100
320 W 2.515
321 D -1.127
322 L 2.677
323 V 0.491
324 K 0.289
325 V 0.315
326 E 0.374
327 E -0.518
328 P -0.536
329 V -0.029
330 S 2.555
331 R 0.719
332 M 0.176
333 I -0.061
334 V 0.735
335 C -0.154
336 S 0.564
337 C 3.267
338 P 0.865
339 V -0.438
340 L 0.783
341 K 2.207
342 N 0.084
343 L 0.117
344 V 2.030
345 H -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 226.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MAWRSGLCET DSRTLKQFLQ EECMWKLVGK SRKHREYRAV ACRSTIFSPE DDSSCILCQL
70 80 90 100 110 120
LLLYRDGEWI ICFCCNGRYQ GHYGVNHVHR RRRRICHLPT LYQLSFGGPL GPASIDFLPS
130 140 150 160 170 180
FSQVTSSMTC DGITPDVIYE VCMLVPQDEA KRILVKGHGA MDLTCQKAVT LGGAGAWLLP
190 200 210 220 230 240
RPEGYTLFFY ILCYDLFTSC GNRCDIPSMT RLMAAATACG QAGCSFCTDH EGHVDPTGNY
250 260 270 280 290 300
VGCTPDMGRC LCYVPCGPMT QSLIHNEEPA TFFCESDDAK YLCAVGSKTA AQVTLGDGLD
310 320 330 340
YHIGVKDSEG RWLPVKTDVW DLVKVEEPVS RMIVCSCPVL KNLVH
UL94 is a viral protein detected in the late stage of human cytomegalovirus infection. UL94 has been shown to interact with pp28, an essential tegument protein required for assembly. Liu et al. showed that UL94 is a shuttling protein with two NLSs and one NES. In addition, they found that L343 (outside of proposed NLSs) is important for nuclear localization and interaction with pp28. Interestingly, UL(1-133) localizes to the nucleus while UL(1-166) is cytoplasmic. They postulated that amino acid between 134-166 regulate either NLS or NES activity.
[1]. "Human cytomegalovirus UL94 is a nucleocytoplasmic shuttling protein containing two NLSs and one NES."
Liu Y, Zhang Z, Zhao X, Wei H, Deng J, Cui Z, Zhang XE (2012)
Virus Res,
166:31-42
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.