DDB1- and CUL4-associated factor 8
UniProt
Show FASTA Format
>gi|74756455|sp|Q5TAQ9.1|DCAF8_HUMAN RecName: Full=DDB1- and CUL4-associated factor 8; AltName: Full=WD repeat-containing protein 42A
MSSKGSSTDGRTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRTSTESRGTDTE
SSGEDKDSDSMEDTGHYSINDENRVHDRSEEEEEEEEEEEEEQPRRRVQRKRANRDQDSSDDERALEDWV
SSETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLAS
GSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVA
QHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVG
GRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSD
GAQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHL
PVLATSGLDHDVKIWAPTAEASTELTGLKDVIKKNKRERDEDSLHQTDLFDSHMLWFLMHHLRQRRHHRR
WREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 999999999988889998989997566553355778985322344544457899999998
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MSSKGSSTDGRTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
10 20 30 40 50 60
Conf: 767889998898887889986558986457988778887023444567763101344401
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
AA: STESRGTDTESSGEDKDSDSMEDTGHYSINDENRVHDRSEEEEEEEEEEEEEQPRRRVQR
70 80 90 100 110 120
Conf: 465878999357898776441146999999888125776310299655776760539999
Pred: CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCHHHH
AA: KRANRDQDSSDDERALEDWVSSETSALPRPRWQALPALRERELGSSARFVYEACGARVFV
130 140 150 160 170 180
Conf: 852320122646580123430699976985139973998106898443997638877411
Pred: HHCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCEE
AA: QRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVF
190 200 210 220 230 240
Conf: 002206999980695128974999982377653453233320584225882699994799
Pred: EEEEECCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCEEE
AA: QAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFL
250 260 270 280 290 300
Conf: 520486148986169999631896538996564369965899987499971898400011
Pred: EEECCCEEEEEEECCCCCCCEEEEECCCCCEEEEEEEEECCCCCCEEEEECCCCCCCCEE
AA: SAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYD
310 320 330 340 350 360
Conf: 036775456665111225875689998615699857997666664089928997289999
Pred: ECCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
AA: QRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSD
370 380 390 400 410 420
Conf: 832323458987676424413217997289712577813899263266778671798874
Pred: CCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCEEEEECCHHHHHHHHHCCCCCC
AA: GAQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGV
430 440 450 460 470 480
Conf: 345788899846840489993343126887677875879999998752155778545760
Pred: CCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCH
AA: VNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTGLKDVIKKNKRERDEDSLHQTDLF
490 500 510 520 530 540
Conf: 478999999874104566776699999999999999999999976779998888899
Pred: HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: DSHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS
550 560 570 580 590
Show Conservation Score by AL2CO
1 M -1.000 *
2 S -1.000 *
3 S -1.000 *
4 K -1.000 *
5 G -1.000 *
6 S -1.000 *
7 S -1.000 *
8 T -1.000 *
9 D -1.000 *
10 G -1.000 *
11 R -1.000 *
12 T -1.000 *
13 D -1.000 *
14 L -1.000 *
15 A -1.000 *
16 N -1.000 *
17 G -1.000 *
18 S -1.000 *
19 L -1.000 *
20 S -1.000 *
21 S -1.000 *
22 S -1.000 *
23 P -1.000 *
24 E -1.000 *
25 E -1.000 *
26 M -1.000 *
27 S -1.000 *
28 G -1.000 *
29 A -1.000 *
30 E -1.000 *
31 E -1.000 *
32 G -1.000 *
33 R -1.000 *
34 E -1.000 *
35 T -1.000 *
36 S -1.000 *
37 S -1.000 *
38 G -1.000 *
39 I -1.000 *
40 E -1.000 *
41 V -1.000 *
42 E -1.000 *
43 A -1.000 *
44 S -1.000 *
45 D -1.000 *
46 L -1.000 *
47 S -1.000 *
48 L -1.000 *
49 S -1.000 *
50 L -1.000 *
51 T -1.000 *
52 G -1.000 *
53 D -1.000 *
54 D -1.000 *
55 G -1.000 *
56 G -1.000 *
57 P -1.000 *
58 N -1.000 *
59 R -1.000 *
60 T -1.000 *
61 S -1.000 *
62 T -1.000 *
63 E -1.000 *
64 S -1.000 *
65 R -1.000 *
66 G -1.000 *
67 T -1.000 *
68 D -1.000 *
69 T -1.000 *
70 E -1.000 *
71 S -1.000 *
72 S -1.000 *
73 G -1.000 *
74 E -1.000 *
75 D -1.000 *
76 K -1.000 *
77 D -1.000 *
78 S -1.000 *
79 D -1.000 *
80 S -1.000 *
81 M -1.000 *
82 E -1.000 *
83 D -1.000 *
84 T -1.000 *
85 G -1.000 *
86 H -1.000 *
87 Y -1.000 *
88 S -1.000 *
89 I -1.000 *
90 N -1.000 *
91 D -1.000 *
92 E -1.000 *
93 N -1.000 *
94 R -1.000 *
95 V -1.000 *
96 H -1.000 *
97 D -1.000 *
98 R -1.000 *
99 S -1.000 *
100 E -1.000 *
101 E -1.000 *
102 E -1.000 *
103 E -1.000 *
104 E -1.000 *
105 E -1.000 *
106 E -1.000 *
107 E -1.000 *
108 E -1.000 *
109 E -1.000 *
110 E -1.000 *
111 E -1.000 *
112 E -1.000 *
113 Q -1.000 *
114 P -1.000 *
115 R -1.000 *
116 R -1.000 *
117 R -1.000 *
118 V -1.000 *
119 Q -1.000 *
120 R -1.000 *
121 K -1.000 *
122 R -1.000 *
123 A -1.000 *
124 N -1.000 *
125 R -1.000 *
126 D -1.000 *
127 Q -1.000 *
128 D -1.000 *
129 S -1.000 *
130 S -1.000 *
131 D -1.000 *
132 D -1.000 *
133 E -1.000 *
134 R -1.000 *
135 A -1.000 *
136 L -1.000 *
137 E -1.000 *
138 D -1.000 *
139 W -1.000 *
140 V -1.000 *
141 S -1.000 *
142 S -1.000 *
143 E -1.000 *
144 T -1.000 *
145 S -1.000 *
146 A -1.000 *
147 L -1.000 *
148 P -1.000 *
149 R -1.000 *
150 P -1.000 *
151 R -1.000 *
152 W -1.000 *
153 Q -1.000 *
154 A -1.000 *
155 L -1.000 *
156 P -1.000 *
157 A -1.000 *
158 L -1.000 *
159 R -1.000 *
160 E -1.000 *
161 R -1.000 *
162 E -1.000 *
163 L -1.000 *
164 G -1.000 *
165 S -1.000 *
166 S -1.000 *
167 A -1.000 *
168 R -1.000 *
169 F -1.000 *
170 V -1.000 *
171 Y -1.000 *
172 E -1.000 *
173 A -1.000 *
174 C -1.000 *
175 G -1.000 *
176 A -1.000 *
177 R 0.036
178 V -0.841
179 F -0.398
180 V 0.536
181 Q -0.926
182 R -0.062
183 F -0.343
184 R -0.591
185 L -0.407
186 Q -1.021
187 H -0.934
188 G -0.788
189 L 1.038
190 E -0.889
191 G -0.041
192 H 2.352
193 T -0.864
194 G -0.292
195 C -1.140
196 V 2.007
197 N -1.046
198 T 0.493
199 L 1.612
200 H -0.591
201 F 1.517
202 N 1.778
203 Q -0.069
204 R -0.440
205 G 1.439
206 T -0.522
207 W -0.599
208 L 1.930
209 A 1.252
210 S 1.226
211 G 1.079
212 S 0.816
213 D -1.044
214 D 2.026
215 L -0.781
216 K -0.777
217 V 1.730
218 V -0.047
219 V 1.530
220 W 3.000
221 D 0.932
222 W -0.300
223 V -0.967
224 R -0.614
225 R -0.217
226 Q -0.095
227 P -1.006
228 V -0.613
229 L -0.602
230 D -0.882
231 F -0.331
232 E -1.014
233 S -0.624
234 G 1.233
235 H 2.376
236 K -0.831
237 S -0.544
238 N -1.209
239 V 1.606
240 F -1.001
241 Q -0.274
242 A 0.618
243 K -0.330
244 F 1.353
245 L 0.143
246 P 0.051
247 N -0.253
248 S 0.349
249 G -1.000 *
250 D -1.000 *
251 S -0.763
252 T -0.779
253 L 1.543
254 A 1.017
255 M 1.410
256 C 1.042
257 A 1.144
258 R -1.080
259 D 3.093
260 G -0.648
261 Q -0.265
262 V 1.993
263 R 1.405
264 V 0.537
265 A 0.388
266 E -0.418
267 L -0.317
268 S -1.190
269 A -0.537
270 T -0.504
271 Q -0.887
272 C -0.922
273 C -0.541
274 K -0.693
275 N -0.636
276 T -0.781
277 K -0.625
278 R -0.909
279 V 0.427
280 A -0.707
281 Q -0.674
282 H 2.055
283 K -0.711
284 G -0.402
285 A -1.193
286 S 0.653
287 H -1.025
288 K -0.206
289 L 1.250
290 A -0.378
291 L 0.368
292 E -0.199
293 P -0.283
294 D -0.204
295 S 0.132
296 P -0.291
297 C -0.797
298 T -0.564
299 F 1.216
300 L 0.398
301 S 1.805
302 A 0.828
303 G 1.604
304 E -0.906
305 D 2.472
306 A -0.653
307 V -0.370
308 V 1.699
309 F 0.508
310 T -0.528
311 I 0.635
312 D 1.225
313 L -0.373
314 R -0.819
315 Q -0.330
316 D -0.519
317 R -0.801
318 P -0.638
319 A -0.826
320 S -0.868
321 K -0.793
322 L 0.085
323 V -0.720
324 V -1.000 *
325 T -1.000 *
326 K -1.000 *
327 E -1.000 *
328 K -0.911
329 E -0.462
330 K -0.193
331 K -0.818
332 V -0.663
333 G -1.148
334 L 1.204
335 Y -1.013
336 T 0.340
337 I 1.503
338 Y -0.661
339 V -0.537
340 N 0.990
341 P 2.364
342 A -1.000 *
343 N 0.051
344 T -0.673
345 H -0.821
346 Q -0.694
347 F 1.183
348 A 0.406
349 V 1.006
350 G 1.232
351 G 0.768
352 R -1.175
353 D 2.069
354 Q -0.736
355 F -0.400
356 V 1.060
357 R 0.801
358 I 1.106
359 Y 2.223
360 D 0.229
361 Q -0.533
362 R -0.788
363 K 0.388
364 I -0.695
365 D -0.517
366 E -1.000 *
367 N -1.000 *
368 E -1.000 *
369 N -1.000 *
370 N -0.452
371 G -1.016
372 V -0.496
373 L -0.885
374 K -0.915
375 K -0.892
376 F -0.072
377 C -1.048
378 P 0.305
379 H -0.290
380 H -0.981
381 L -0.883
382 V -1.000 *
383 N -1.000 *
384 S -1.000 *
385 E -1.000 *
386 S -1.000 *
387 K -1.144
388 A -0.278
389 N -0.965
390 I 1.136
391 T -1.058
392 C 0.112
393 L 1.226
394 V -0.519
395 Y 1.006
396 S 1.581
397 H -0.491
398 D 0.454
399 G 0.149
400 T -0.493
401 E -0.583
402 L 1.788
403 L 1.726
404 A 0.711
405 S 0.989
406 Y 0.733
407 N -1.125
408 D 1.964
409 E -0.668
410 D -0.423
411 I 1.721
412 Y 1.045
413 L 1.606
414 F 1.952
415 N 0.082
416 S -0.363
417 S -1.022
418 H -0.980
419 S -1.213
420 D -1.078
421 G -0.993
422 A -1.042
423 Q -0.901
424 Y -1.010
425 V -0.958
426 K -0.780
427 R -0.664
428 Y 0.684
429 K -0.882
430 G 0.491
431 H 0.883
432 R -0.888
433 N -0.438
434 N -1.133
435 A -0.717
436 T -0.813
437 V -0.102
438 K -1.107
439 G -0.069
440 V 1.235
441 N -0.336
442 F 0.450
443 Y -0.130
444 G 2.000
445 P 0.210
446 K -0.276
447 S -0.237
448 E -0.805
449 F -0.580
450 V 1.282
451 V 0.868
452 S 2.007
453 G 1.158
454 S 1.034
455 D -1.082
456 C 2.156
457 G -0.593
458 H -0.151
459 I 1.935
460 F 0.443
461 L 1.682
462 W 3.857
463 E 0.384
464 K -0.384
465 S -0.845
466 S 0.493
467 C -0.024
468 Q -0.572
469 I -0.448
470 I -0.534
471 Q -0.588
472 F -0.695
473 M 0.657
474 E -0.906
475 G 1.201
476 D 0.848
477 K -0.665
478 G -0.516
479 G -1.155
480 V 0.258
481 V -1.037
482 N 0.022
483 C -0.099
484 L 1.508
485 E -0.241
486 P -0.133
487 H 1.354
488 P 0.028
489 H -0.442
490 L -0.611
491 P -0.813
492 V -0.686
493 L 1.356
494 A 1.423
495 T 2.008
496 S 1.242
497 G 0.756
498 L -1.261
499 D 2.894
500 H -0.882
501 D -0.233
502 V 1.703
503 K 1.407
504 I 1.903
505 W 3.837
506 A -0.342
507 P -0.672
508 T -0.594
509 A -0.263
510 E -0.753
511 A -1.023
512 S -0.800
513 T -0.947
514 E -0.734
515 L 0.073
516 T -1.053
517 G -0.170
518 L -0.218
519 K -0.675
520 D -0.533
521 V -1.263
522 I 0.700
523 K -1.108
524 K -0.508
525 N 0.346
526 K -0.749
527 R -0.390
528 E -0.364
529 R -0.202
530 D 0.000
531 E 0.033
532 D -0.749
533 S -0.776
534 L 0.386
535 H -0.645
536 Q -0.572
537 T -0.396
538 D -0.287
539 L -1.271
540 F 0.638
541 D -0.713
542 S -0.260
543 H -0.164
544 M -0.372
545 L 0.804
546 W 0.597
547 F -0.320
548 L -0.180
549 M -0.941
550 H -0.494
551 H -0.711
552 L -0.708
553 R -0.462
554 Q -0.725
555 R -0.530
556 R -0.882
557 H -0.573
558 H -0.543
559 R -0.951
560 R -0.718
561 W -1.200
562 R -0.407
563 E -1.121
564 P -0.569
565 G -0.446
566 V -0.679
567 G -0.693
568 A -0.686
569 T -0.822
570 D 0.222
571 A -0.353
572 D -0.805
573 S -0.957
574 D -0.398
575 E -0.015
576 S 0.568
577 P -0.392
578 S 0.779
579 S -1.111
580 S 0.583
581 D -0.264
582 T 0.300
583 S -1.000 *
584 D -1.000 *
585 E -1.000 *
586 E -1.000 *
587 E -1.000 *
588 G -1.000 *
589 P -1.000 *
590 D -1.000 *
591 R -1.000 *
592 V -1.000 *
593 Q -1.000 *
594 C -1.000 *
595 M -1.000 *
596 P -1.000 *
597 S -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 239.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MSSKGSSTDG RTDLANGSLS SSPEEMSGAE EGRETSSGIE VEASDLSLSL TGDDGGPNRT
70 80 90 100 110 120
STESRGTDTE SSGEDKDSDS MEDTGHYSIN DENRVHDRSE EEEEEEEEEE EEQPRRRVQR
130 140 150 160 170 180
KRANRDQDSS DDERALEDWV SSETSALPRP RWQALPALRE RELGSSARFV YEACGARVFV
190 200 210 220 230 240
QRFRLQHGLE GHTGCVNTLH FNQRGTWLAS GSDDLKVVVW DWVRRQPVLD FESGHKSNVF
250 260 270 280 290 300
QAKFLPNSGD STLAMCARDG QVRVAELSAT QCCKNTKRVA QHKGASHKLA LEPDSPCTFL
310 320 330 340 350 360
SAGEDAVVFT IDLRQDRPAS KLVVTKEKEK KVGLYTIYVN PANTHQFAVG GRDQFVRIYD
370 380 390 400 410 420
QRKIDENENN GVLKKFCPHH LVNSESKANI TCLVYSHDGT ELLASYNDED IYLFNSSHSD
430 440 450 460 470 480
GAQYVKRYKG HRNNATVKGV NFYGPKSEFV VSGSDCGHIF LWEKSSCQII QFMEGDKGGV
490 500 510 520 530 540
VNCLEPHPHL PVLATSGLDH DVKIWAPTAE ASTELTGLKD VIKKNKRERD EDSLHQTDLF
550 560 570 580 590
DSHMLWFLMH HLRQRRHHRR WREPGVGATD ADSDESPSSS DTSDEEEGPD RVQCMPS
WDR42A is a member of the Trp-Asp motif containing protein. It predominantly localizes to the nucleus. Wu et al. investigated the subcellular localization of WDR42A and found that it contains a NES capable of mediating the export of a reporter protein in LMB sensitive manner. In addition, WDR42A has a classical NLS.
[1]. "Characterization of nuclear import and export signals determining the subcellular localization of WD repeat-containing protein 42A (WDR42A)."
Wu F, Wang S, Xing J, Li M, Zheng C (2012)
FEBS Lett,
586:1079-85
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.