Triplex capsid protein VP19C
UniProt
*highlighted yellow in the full sequence
L342A/L345A/L349A/I351A
*shown as underlined residues in the full sequence
342LERLFGRLRI
351
Show FASTA Format
>gi|418280|sp|P32888.1|VP19_HHV11 RecName: Full=Triplex capsid protein VP19C; AltName: Full=Virion protein UL38
MKTNPLPATPSVWGGSTVELPPTTRDTAGQGLLRRVLRPPISRRDGPGLPRGSGPRRAASTLWLLGLDGT
DAPPGALTPNDDTEQALDKILRGTMRGGAALIGSPRHHLTRQVILTDLCQPNADRAGTLLLALRHPADLP
HLAHQRAPPGRQTERLGEAWGQLMEATALGSGRAESGCTRAGLVSFNFLVAACAASYDARDAADAVRAHV
TANYRGTRVGARLDRFSECLRAMVHTHVFPHEVMRFFGGLVSWVTQDELASVTAVCAGPQEAAHTGHPGR
PRSAVILPACAFVDLDAELGLGGPGAAFLYLVFTYRQRRDQELCCVYVIKSQLPPRGLEPALERLFGRLR
ITNTIHGTEDMTPPAPNRNPDFPLAGLAANPQTPRCSAGQVTNPQFADRLYRWQPDLRGRPTARTCTYAA
FAELGMMPEDSPRCLHRTERFGAVSVPVVILEGVVWRPGEWRACA
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 988999899864467632379984233365432211378854578999999988865440
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
AA: MKTNPLPATPSVWGGSTVELPPTTRDTAGQGLLRRVLRPPISRRDGPGLPRGSGPRRAAS
10 20 30 40 50 60
Conf: 354204779999999889997058999999975522775445898616773113530478
Pred: EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCC
AA: TLWLLGLDGTDAPPGALTPNDDTEQALDKILRGTMRGGAALIGSPRHHLTRQVILTDLCQ
70 80 90 100 110 120
Conf: 897877946787239999444310069999981069999999998810387546997200
Pred: CCCCCCCCEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEE
AA: PNADRAGTLLLALRHPADLPHLAHQRAPPGRQTERLGEAWGQLMEATALGSGRAESGCTR
130 140 150 160 170 180
Conf: 130346889975023456300678999998861787335665665999999987312666
Pred: CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
AA: AGLVSFNFLVAACAASYDARDAADAVRAHVTANYRGTRVGARLDRFSECLRAMVHTHVFP
190 200 210 220 230 240
Conf: 620100244112000455037987503623322049999985127712102442354248
Pred: CCHHHCCCCCCHHHCCCCCEEEEEECCCCHHHHCCCCCCCCCCEEEECCEEEEECCCCCC
AA: HEVMRFFGGLVSWVTQDELASVTAVCAGPQEAAHTGHPGRPRSAVILPACAFVDLDAELG
250 260 270 280 290 300
Conf: 589980589999998631596106999996149976658899876421100211124467
Pred: CCCCCEEEEEEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
AA: LGGPGAAFLYLVFTYRQRRDQELCCVYVIKSQLPPRGLEPALERLFGRLRITNTIHGTED
310 320 330 340 350 360
Conf: 899999999998622223599999988998689121112345576878889930356999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHH
AA: MTPPAPNRNPDFPLAGLAANPQTPRCSAGQVTNPQFADRLYRWQPDLRGRPTARTCTYAA
370 380 390 400 410 420
Conf: 996056899997420233441852012899705155289840049
Pred: HHHHCCCCCCCCCCEEEEEEECCEECCEEEECCCEECCCCCEECC
AA: FAELGMMPEDSPRCLHRTERFGAVSVPVVILEGVVWRPGEWRACA
430 440 450 460
Show Conservation Score by AL2CO
1 M -1.000 *
2 K -1.000 *
3 T -1.000 *
4 N -1.000 *
5 P -1.000 *
6 L -1.000 *
7 P -1.000 *
8 A -1.000 *
9 T -1.000 *
10 P -1.000 *
11 S -1.000 *
12 V -1.000 *
13 W -1.000 *
14 G -1.000 *
15 G -1.000 *
16 S -1.000 *
17 T -1.000 *
18 V -1.000 *
19 E -1.000 *
20 L -1.000 *
21 P -1.000 *
22 P -1.000 *
23 T -1.000 *
24 T -1.000 *
25 R -1.000 *
26 D -1.000 *
27 T -1.000 *
28 A -1.000 *
29 G -1.000 *
30 Q -1.000 *
31 G -1.000 *
32 L -1.000 *
33 L -1.000 *
34 R -1.000 *
35 R -1.000 *
36 V -1.000 *
37 L -1.000 *
38 R -1.000 *
39 P 0.401
40 P -0.945
41 I -1.000 *
42 S -1.000 *
43 R -1.000 *
44 R -1.000 *
45 D -1.000 *
46 G -1.000 *
47 P -0.025
48 G 0.141
49 L -0.976
50 P -0.336
51 R -0.920
52 G -0.331
53 S -0.676
54 G -0.814
55 P -0.709
56 R 0.157
57 R -0.393
58 A -1.143
59 A -0.863
60 S -0.940
61 T 0.864
62 L -0.247
63 W 0.757
64 L -0.408
65 L 0.256
66 G -0.440
67 L -1.205
68 D -0.922
69 G -0.860
70 T -1.134
71 D -1.118
72 A -1.353
73 P -0.910
74 P -0.794
75 G -0.363
76 A -0.660
77 L -0.977
78 T -1.324
79 P -1.096
80 N -1.520
81 D -0.769
82 D -0.275
83 T -0.680
84 E -1.198
85 Q -1.177
86 A -0.825
87 L -0.894
88 D -0.912
89 K -0.793
90 I -0.639
91 L -0.358
92 R -1.105
93 G -1.125
94 T -1.693
95 M -1.148
96 R -0.635
97 G -0.856
98 G -0.587
99 A -1.545
100 A -0.627
101 L -0.686
102 I -1.352
103 G -0.386
104 S -1.187
105 P -0.270
106 R -0.882
107 H -1.177
108 H -0.914
109 L 1.795
110 T 0.366
111 R 0.143
112 Q 1.574
113 V 1.034
114 I 1.055
115 L 0.934
116 T 0.609
117 D 2.692
118 L 0.821
119 C 0.235
120 Q -0.936
121 P 2.692
122 N -0.625
123 A -0.513
124 D 1.470
125 R -0.889
126 A 0.031
127 G 2.692
128 T -0.057
129 L 0.273
130 L -0.007
131 L 1.234
132 A -1.203
133 L 0.506
134 R 1.676
135 H 0.465
136 P -0.241
137 A -0.876
138 D 1.918
139 L -0.777
140 P -0.758
141 H -0.465
142 L -0.657
143 A 0.063
144 H -1.649
145 Q -1.177
146 R -0.535
147 A 0.103
148 P 0.172
149 P -0.302
150 G 0.261
151 R -0.104
152 Q -0.636
153 T -0.583
154 E -0.377
155 R -0.704
156 L 0.628
157 G -0.731
158 E 0.537
159 A 0.794
160 W 0.408
161 G -1.209
162 Q -1.169
163 L 0.772
164 M -0.934
165 E -0.506
166 A -0.301
167 T -0.422
168 A -0.727
169 L -0.567
170 G 0.241
171 S -0.648
172 G -0.839
173 R -0.483
174 A -1.328
175 E -0.635
176 S -0.878
177 G -1.065
178 C -0.244
179 T -0.409
180 R 1.488
181 A 0.066
182 G 0.583
183 L 0.654
184 V 0.495
185 S 2.692
186 F 0.969
187 N 0.022
188 F 1.918
189 L 0.765
190 V 0.418
191 A 2.692
192 A 0.942
193 C -0.004
194 A 0.617
195 A -0.696
196 S -0.456
197 Y 2.692
198 D -0.699
199 A -0.018
200 R -0.216
201 D -0.762
202 A 0.493
203 A 1.115
204 D 0.968
205 A 1.704
206 V 0.172
207 R 1.281
208 A 1.471
209 H 0.870
210 V 1.002
211 T -0.259
212 A 0.746
213 N 0.165
214 Y 1.305
215 R 0.003
216 G 0.050
217 T 0.025
218 R 1.074
219 V -0.464
220 G -0.628
221 A -0.565
222 R 0.533
223 L 1.917
224 D 0.056
225 R -0.218
226 F 1.567
227 S -0.352
228 E -0.293
229 C -0.281
230 L 1.199
231 R -1.065
232 A 0.235
233 M 0.746
234 V 0.844
235 H -0.033
236 T 0.396
237 H 0.827
238 V 0.615
239 F 1.097
240 P 2.692
241 H 2.692
242 E -0.581
243 V -0.957
244 M 0.256
245 R -1.139
246 F -0.400
247 F -0.246
248 G 2.692
249 G 0.606
250 L 1.199
251 V -0.682
252 S -0.132
253 W -0.330
254 V 0.736
255 T -0.880
256 Q 0.934
257 D 0.020
258 E -0.657
259 L 0.312
260 A 1.181
261 S 0.104
262 V 0.422
263 T 1.266
264 A 0.427
265 V 0.836
266 C -0.430
267 A -0.858
268 G 2.692
269 P -0.883
270 Q 0.840
271 E 1.924
272 A 0.027
273 A -0.078
274 H -0.384
275 T 0.160
276 G -0.632
277 H -1.495
278 P -0.731
279 G -0.356
280 R -1.622
281 P 0.632
282 R 1.107
283 S -0.080
284 A 0.041
285 V 0.075
286 I -1.108
287 L 0.441
288 P 2.692
289 A 1.924
290 C 2.692
291 A 0.547
292 F 0.967
293 V 0.106
294 D 2.692
295 L 0.048
296 D 2.692
297 A -1.164
298 E -0.508
299 L -0.339
300 G -0.384
301 L -0.786
302 G -0.626
303 G -0.928
304 P -0.909
305 G 0.483
306 A -0.020
307 A -0.674
308 F -0.511
309 L 0.964
310 Y 1.287
311 L 1.704
312 V 0.014
313 F 1.924
314 T 0.436
315 Y 2.692
316 R -0.863
317 Q 1.107
318 R -0.696
319 R -0.811
320 D -0.785
321 Q 0.387
322 E 0.988
323 L -0.888
324 C -0.604
325 C 0.523
326 V -0.032
327 Y 0.581
328 V 0.490
329 I 0.311
330 K 0.054
331 S 1.670
332 Q -1.104
333 L 0.293
334 P -0.354
335 P -0.161
336 R -1.172
337 G -0.413
338 L -0.038
339 E -0.373
340 P -0.893
341 A -0.646
342 L 0.312
343 E -0.411
344 R -0.667
345 L -0.244
346 F 0.847
347 G -0.383
348 R 0.199
349 L -0.675
350 R 1.924
351 I -0.086
352 T -0.295
353 N 1.288
354 T 0.778
355 I -0.147
356 H -0.887
357 G 1.886
358 T -0.601
359 E -0.321
360 D -0.232
361 M -0.844
362 T -0.400
363 P -0.188
364 P -0.198
365 A -1.300
366 P -0.645
367 N -1.293
368 R -0.919
369 N -0.778
370 P -0.859
371 D -0.411
372 F 0.620
373 P 0.308
374 L 0.308
375 A -1.956
376 G -1.138
377 L 0.228
378 A -1.047
379 A -0.928
380 N -0.505
381 P -1.086
382 Q -1.529
383 T -0.912
384 P -0.733
385 R 1.771
386 C 0.708
387 S -0.322
388 A -1.137
389 G -0.619
390 Q -0.867
391 V -0.910
392 T -1.522
393 N -0.863
394 P -0.744
395 Q -0.867
396 F -0.931
397 A -0.918
398 D -0.408
399 R -0.540
400 L 1.241
401 Y -0.287
402 R -0.332
403 W 0.261
404 Q -0.964
405 P 0.015
406 D 0.586
407 L -0.153
408 R 0.167
409 G 1.917
410 R 0.236
411 P 1.746
412 T 0.513
413 A -0.927
414 R -0.707
415 T 0.818
416 C 0.161
417 T -0.323
418 Y 1.279
419 A 1.130
420 A 2.692
421 F 1.453
422 A -0.900
423 E -0.075
424 L 0.388
425 G 2.692
426 M -1.245
427 M 0.274
428 P -0.683
429 E -0.608
430 D -0.789
431 S -0.500
432 P -0.539
433 R -0.209
434 C -0.646
435 L -1.130
436 H -0.659
437 R -0.546
438 T -0.561
439 E 0.261
440 R 0.583
441 F -0.295
442 G 0.756
443 A 0.417
444 V -0.564
445 S -0.344
446 V 0.358
447 P 0.523
448 V -0.260
449 V 0.871
450 I -0.882
451 L 0.570
452 E 0.938
453 G 0.730
454 V 0.430
455 V -1.282
456 W 1.266
457 R -0.640
458 P -0.912
459 G 0.256
460 E -0.618
461 W 2.692
462 R -0.912
463 A 0.446
464 C 2.692
465 A -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 249.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MKTNPLPATP SVWGGSTVEL PPTTRDTAGQ GLLRRVLRPP ISRRDGPGLP RGSGPRRAAS
70 80 90 100 110 120
TLWLLGLDGT DAPPGALTPN DDTEQALDKI LRGTMRGGAA LIGSPRHHLT RQVILTDLCQ
130 140 150 160 170 180
PNADRAGTLL LALRHPADLP HLAHQRAPPG RQTERLGEAW GQLMEATALG SGRAESGCTR
190 200 210 220 230 240
AGLVSFNFLV AACAASYDAR DAADAVRAHV TANYRGTRVG ARLDRFSECL RAMVHTHVFP
250 260 270 280 290 300
HEVMRFFGGL VSWVTQDELA SVTAVCAGPQ EAAHTGHPGR PRSAVILPAC AFVDLDAELG
310 320 330 340 350 360
LGGPGAAFLY LVFTYRQRRD QELCCVYVIK SQLPPRGLEP ALERLFGRLR ITNTIHGTED
370 380 390 400 410 420
MTPPAPNRNP DFPLAGLAAN PQTPRCSAGQ VTNPQFADRL YRWQPDLRGR PTARTCTYAA
430 440 450 460
FAELGMMPED SPRCLHRTER FGAVSVPVVI LEGVVWRPGE WRACA
VP19C is a structural protein of human herpes simplex virus 1(HHV-1). VP19C forms triplex with two VP23 (another HHV-1 structural protein) to stabilize the capsid shell through interactions with VP5 molecules. VP19c has also shown to be required for the nuclear localization of VP23.
[1]. "The First Identified Nucleocytoplasmic Shuttling Herpesviral Capsid Protein: Herpes Simplex Virus Type 1 VP19C"
Lei Zhao and Chunfu Zheng (2012)
PLoS One,
8:
PubMed
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