*highlighted yellow in the full sequence
440LLQL
443 by Deletion
Show FASTA Format
>gi|62906901|sp|Q04206.2|TF65_HUMAN RecName: Full=Transcription factor p65; AltName: Full=Nuclear factor NF-kappa-B p65 subunit; AltName: Full=Nuclear factor of kappa light polypeptide gene enhancer in B-cells 3
MDELFPLIFPAEPAQASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPG
TVRISLVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCIHSFQNLGIQCVKKRDLEQAISQRIQTNNNP
FQVPIEEQRGDYDLNAVRLCFQVTVRDPSGRPLRLPPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGD
EIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDREL
SEPMEFQYLPDTDDRHRIEEKRKRTYETFKSIMKKSPFSGPTDPRPPPRRIAVPSRSSASVPKPAPQPYP
FTSSLSTINYDEFPTMVFPSGQISQASALAPAPPQVLPQAPAPAPAPAMVSALAQAPAPVPVLAPGPPQA
VAPPAPKPTQAGEGTLSEALLQLQFDDEDLGALLGNSTDPAVFTDLASVDNSEFQQLLNQGIPVAPHTTE
PMLMEYPEAITRLVTGAQRPPDPAPAPLGAPGLPNGLLSGDEDFSSIADMDFSALLSQISS
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 998788668899999999929999504888851112568879898999988999988780
Pred: CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
AA: MDELFPLIFPAEPAQASGPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPT
10 20 30 40 50 60
Conf: 996088774499999440799999987874543489972799937997558814851347
Pred: EEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCEEE
AA: IKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGFYEAELCPDRCIHSFQNLGIQC
70 80 90 100 110 120
Conf: 523279999999998259998984222058322570679629999699999031796445
Pred: EECCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCCCEEECCCCCC
AA: VKKRDLEQAISQRIQTNNNPFQVPIEEQRGDYDLNAVRLCFQVTVRDPSGRPLRLPPVLS
130 140 150 160 170 180
Conf: 533259999999983887167721246895489954056689808995458700003669
Pred: CCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCC
AA: HPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFS
190 200 210 220 230 240
Conf: 864115688994199999999996438999998089977799964133179988578986
Pred: CCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEECCCCCCHHHHHH
AA: QADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRHRIEE
250 260 270 280 290 300
Conf: 211304666765404999999999999997779999999889999999998888878899
Pred: HHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: KRKRTYETFKSIMKKSPFSGPTDPRPPPRRIAVPSRSSASVPKPAPQPYPFTSSLSTINY
310 320 330 340 350 360
Conf: 999985579998897877999999999999999999976664458999988899999998
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: DEFPTMVFPSGQISQASALAPAPPQVLPQAPAPAPAPAMVSALAQAPAPVPVLAPGPPQA
370 380 390 400 410 420
Conf: 999999999999999410012688890112014589999421147457892687752049
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
AA: VAPPAPKPTQAGEGTLSEALLQLQFDDEDLGALLGNSTDPAVFTDLASVDNSEFQQLLNQ
430 440 450 460 470 480
Conf: 977899989988788981000012477899999999999999999888998666776520
Pred: CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: GIPVAPHTTEPMLMEYPEAITRLVTGAQRPPDPAPAPLGAPGLPNGLLSGDEDFSSIADM
490 500 510 520 530 540
Conf: 07788641079
Pred: HHHHHHHHCCC
AA: DFSALLSQISS
550
Show Conservation Score by AL2CO
1 M -1.000 *
2 D -1.000 *
3 E -1.000 *
4 L -1.000 *
5 F -1.000 *
6 P -1.000 *
7 L -1.000 *
8 I -1.000 *
9 F -1.000 *
10 P -1.000 *
11 A -0.688
12 E -1.000 *
13 P -0.166
14 A -0.644
15 Q -0.575
16 A -0.851
17 S -0.539
18 G -0.577
19 P 0.658
20 Y -0.346
21 V 1.041
22 E -0.199
23 I 2.246
24 I -0.042
25 E 0.446
26 Q 1.902
27 P 3.371
28 K 0.083
29 Q 0.089
30 R 1.100
31 G 0.182
32 M 0.802
33 R 3.338
34 F 2.302
35 R 2.015
36 Y 3.729
37 K -0.077
38 C 1.075
39 E 3.417
40 G 1.928
41 R 0.228
42 S 0.834
43 A 1.425
44 G 3.055
45 S 0.309
46 I 1.520
47 P -0.006
48 G 1.804
49 E -0.168
50 R -0.260
51 S 0.509
52 T -0.167
53 D -0.454
54 T -0.407
55 T -0.236
56 K 0.552
57 T 0.474
58 H 0.338
59 P 1.226
60 T 0.026
61 I 1.715
62 K 1.135
63 I 1.424
64 N -0.598
65 G 1.061
66 Y 0.017
67 T -0.828
68 G 0.510
69 P -0.416
70 G 0.173
71 T -0.494
72 V 1.961
73 R 0.147
74 I 0.638
75 S -0.006
76 L 1.906
77 V 0.935
78 T 0.844
79 K -0.391
80 D -0.205
81 P -0.485
82 P -0.130
83 H -0.339
84 R -0.257
85 P 0.493
86 H 2.207
87 P 1.025
88 H 2.179
89 E -0.091
90 L 2.042
91 V 0.734
92 G 0.564
93 K 0.756
94 D 0.039
95 C 0.346
96 R -0.580
97 D -0.081
98 G 0.163
99 F -0.394
100 Y 0.243
101 E -0.512
102 A -0.112
103 E -0.651
104 L -0.089
105 C -0.418
106 P -0.336
107 D -0.218
108 R -0.633
109 C -0.755
110 I -0.502
111 H -0.258
112 S -0.551
113 F 1.436
114 Q -0.577
115 N 0.293
116 L 1.393
117 G 0.612
118 I 1.761
119 Q -0.276
120 C 0.354
121 V 0.348
122 K 0.444
123 K 0.637
124 R 0.375
125 D -0.097
126 L 0.794
127 E -0.641
128 Q -0.345
129 A -0.200
130 I 0.975
131 S -0.694
132 Q -0.703
133 R 1.419
134 I -0.131
135 Q -0.273
136 T -0.407
137 N -0.230
138 N -0.432
139 N -0.423
140 P 0.328
141 F 0.144
142 Q 0.151
143 V -0.586
144 P -0.225
145 I -0.787
146 E -0.359
147 E -0.476
148 Q -0.775
149 R -0.612
150 G -0.162
151 D -0.567
152 Y -0.173
153 D 0.969
154 L 0.624
155 N 1.035
156 A 0.026
157 V 1.576
158 R 0.914
159 L 1.549
160 C 0.169
161 F 2.003
162 Q 0.752
163 V 1.246
164 T -0.254
165 V 0.266
166 R -0.493
167 D -0.168
168 P -0.436
169 S -0.375
170 G 0.017
171 R -0.729
172 P -0.882
173 L -0.695
174 R -0.621
175 L 1.113
176 P -0.478
177 P 0.854
178 V 1.172
179 L 0.181
180 S 3.013
181 H -0.245
182 P 0.380
183 I 2.325
184 F 0.265
185 D 1.514
186 N 0.364
187 R 1.318
188 A 0.146
189 P 0.503
190 N 0.143
191 T 0.107
192 A 0.558
193 E 0.116
194 L 2.680
195 K -0.225
196 I 2.463
197 C -0.123
198 R 0.570
199 V -0.098
200 N 1.345
201 R -0.412
202 N -0.328
203 S -0.113
204 G 0.984
205 S -0.022
206 C 0.969
207 L -0.674
208 G 3.492
209 G 0.738
210 D 0.057
211 E 0.427
212 I 1.639
213 F 0.505
214 L 1.778
215 L 0.268
216 C 1.778
217 D 0.390
218 K 1.595
219 V 1.650
220 Q -0.338
221 K 0.771
222 E 1.099
223 D 1.143
224 I 0.951
225 E -0.099
226 V 1.478
227 Y 0.383
228 F 0.750
229 T 0.001
230 G -0.208
231 P -0.642
232 G -0.485
233 W 2.543
234 E -0.109
235 A -0.243
236 R -0.449
237 G 1.046
238 S -0.516
239 F 0.222
240 S -0.536
241 Q -0.200
242 A -0.570
243 D 0.267
244 V 0.102
245 H 0.730
246 R 0.795
247 Q 0.370
248 V 0.060
249 A 0.549
250 I 1.817
251 V 0.277
252 F 1.209
253 R 0.494
254 T 1.295
255 P 3.646
256 P 0.081
257 Y 2.533
258 A -0.495
259 D -0.426
260 P -0.213
261 S -0.705
262 L 1.184
263 Q -0.686
264 A -0.475
265 P 0.098
266 V 0.335
267 R -0.402
268 V 1.914
269 S -0.611
270 M 1.147
271 Q -0.276
272 L 1.921
273 R -0.393
274 R 0.826
275 P -0.307
276 S 0.785
277 D 0.207
278 R -0.260
279 E -0.577
280 L -0.306
281 S 1.646
282 E -0.036
283 P 0.152
284 M -0.335
285 E -0.433
286 F 2.193
287 Q -0.153
288 Y 1.597
289 L -0.346
290 P 1.739
291 D -0.591
292 T -0.639
293 D -0.975
294 D -0.521
295 R -0.633
296 H -0.737
297 R -0.824
298 I -0.590
299 E -0.972
300 E -0.646
301 K 0.193
302 R -0.165
303 K -0.334
304 R -0.446
305 T -0.866
306 Y -0.922
307 E -0.613
308 T -0.790
309 F -0.779
310 K -0.706
311 S -0.880
312 I -0.879
313 M -0.902
314 K -0.970
315 K -0.965
316 S -0.923
317 P -0.728
318 F -0.910
319 S -0.823
320 G -0.942
321 P -0.871
322 T -0.917
323 D -0.932
324 P -0.930
325 R -1.052
326 P -0.879
327 P -1.000
328 P -0.974
329 R -0.906
330 R -0.899
331 I -0.969
332 A -0.808
333 V -0.943
334 P -0.762
335 S -0.993
336 R -1.032
337 S -0.904
338 S -0.936
339 A -0.861
340 S -0.972
341 V -1.018
342 P -0.815
343 K -0.951
344 P -0.865
345 A -1.035
346 P -0.961
347 Q -0.961
348 P -0.820
349 Y -0.999
350 P -0.776
351 F -0.828
352 T -0.980
353 S -0.882
354 S -0.926
355 L -0.897
356 S -0.988
357 T -0.891
358 I -0.968
359 N -0.923
360 Y -0.895
361 D -0.941
362 E -1.002
363 F -0.977
364 P -0.572
365 T -0.936
366 M -0.839
367 V -0.972
368 F -0.943
369 P -0.901
370 S -0.903
371 G -0.867
372 Q -0.976
373 I -0.924
374 S -0.889
375 Q -0.869
376 A -0.934
377 S -0.983
378 A -0.960
379 L -1.013
380 A -0.967
381 P -0.697
382 A -0.930
383 P -0.894
384 P -0.891
385 Q -0.924
386 V -0.928
387 L -0.963
388 P -0.910
389 Q -0.891
390 A -0.872
391 P -0.897
392 A -0.999
393 P -0.916
394 A -0.912
395 P -0.912
396 A -0.940
397 P -0.853
398 A -0.814
399 M -0.975
400 V -0.955
401 S -0.675
402 A -0.910
403 L -0.948
404 A -0.855
405 Q -0.977
406 A -0.785
407 P -0.699
408 A -0.915
409 P -0.723
410 V -0.779
411 P -0.819
412 V -0.856
413 L -1.013
414 A -0.827
415 P -0.591
416 G -0.849
417 P -0.777
418 P -0.738
419 Q -0.701
420 A -0.710
421 V -0.830
422 A -0.705
423 P -0.627
424 P -0.904
425 A -0.661
426 P -0.657
427 K -0.926
428 P -0.872
429 T -0.841
430 Q -0.751
431 A -0.806
432 G -1.000 *
433 E -1.000 *
434 G -1.000 *
435 T -1.000 *
436 L -1.000 *
437 S -1.000 *
438 E -1.000 *
439 A -1.000 *
440 L -1.000 *
441 L -1.000 *
442 Q -1.000 *
443 L -1.000 *
444 Q -1.000 *
445 F -1.000 *
446 D -1.000 *
447 D -1.000 *
448 E -1.000 *
449 D -1.000 *
450 L -1.000 *
451 G -1.000 *
452 A -1.000 *
453 L -1.000 *
454 L -1.000 *
455 G -1.000 *
456 N -1.000 *
457 S -1.000 *
458 T -1.000 *
459 D -1.000 *
460 P -1.000 *
461 A -1.000 *
462 V -1.000 *
463 F -1.000 *
464 T -1.000 *
465 D -1.000 *
466 L -1.000 *
467 A -1.000 *
468 S -1.000 *
469 V -1.000 *
470 D -1.000 *
471 N -1.000 *
472 S -1.000 *
473 E -1.000 *
474 F -1.000 *
475 Q -1.000 *
476 Q -1.000 *
477 L -1.000 *
478 L -1.000 *
479 N -1.000 *
480 Q -1.000 *
481 G -1.000 *
482 I -1.000 *
483 P -1.000 *
484 V -1.000 *
485 A -1.000 *
486 P -1.000 *
487 H -1.000 *
488 T -1.000 *
489 T -1.000 *
490 E -1.000 *
491 P -1.000 *
492 M -1.000 *
493 L -1.000 *
494 M -1.000 *
495 E -1.000 *
496 Y -1.000 *
497 P -1.000 *
498 E -1.000 *
499 A -1.000 *
500 I -1.000 *
501 T -1.000 *
502 R -1.000 *
503 L -1.000 *
504 V -1.000 *
505 T -1.000 *
506 G -1.000 *
507 A -1.000 *
508 Q -1.000 *
509 R -1.000 *
510 P -1.000 *
511 P -1.000 *
512 D -1.000 *
513 P -1.000 *
514 A -1.000 *
515 P -1.000 *
516 A -1.000 *
517 P -1.000 *
518 L -1.000 *
519 G -1.000 *
520 A -1.000 *
521 P -1.000 *
522 G -1.000 *
523 L -1.000 *
524 P -1.000 *
525 N -1.000 *
526 G -1.000 *
527 L -1.000 *
528 L -1.000 *
529 S -1.000 *
530 G -1.000 *
531 D -1.000 *
532 E -1.000 *
533 D -1.000 *
534 F -1.000 *
535 S -1.000 *
536 S -1.000 *
537 I -1.000 *
538 A -1.000 *
539 D -1.000 *
540 M -1.000 *
541 D -1.000 *
542 F -1.000 *
543 S -1.000 *
544 A -1.000 *
545 L -1.000 *
546 L -1.000 *
547 S -1.000 *
548 Q -1.000 *
549 I -1.000 *
550 S -1.000 *
551 S -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 25.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MDELFPLIFP AEPAQASGPY VEIIEQPKQR GMRFRYKCEG RSAGSIPGER STDTTKTHPT
70 80 90 100 110 120
IKINGYTGPG TVRISLVTKD PPHRPHPHEL VGKDCRDGFY EAELCPDRCI HSFQNLGIQC
130 140 150 160 170 180
VKKRDLEQAI SQRIQTNNNP FQVPIEEQRG DYDLNAVRLC FQVTVRDPSG RPLRLPPVLS
190 200 210 220 230 240
HPIFDNRAPN TAELKICRVN RNSGSCLGGD EIFLLCDKVQ KEDIEVYFTG PGWEARGSFS
250 260 270 280 290 300
QADVHRQVAI VFRTPPYADP SLQAPVRVSM QLRRPSDREL SEPMEFQYLP DTDDRHRIEE
310 320 330 340 350 360
KRKRTYETFK SIMKKSPFSG PTDPRPPPRR IAVPSRSSAS VPKPAPQPYP FTSSLSTINY
370 380 390 400 410 420
DEFPTMVFPS GQISQASALA PAPPQVLPQA PAPAPAPAMV SALAQAPAPV PVLAPGPPQA
430 440 450 460 470 480
VAPPAPKPTQ AGEGTLSEAL LQLQFDDEDL GALLGNSTDP AVFTDLASVD NSEFQQLLNQ
490 500 510 520 530 540
GIPVAPHTTE PMLMEYPEAI TRLVTGAQRP PDPAPAPLGA PGLPNGLLSG DEDFSSIADM
550
DFSALLSQIS S
RelA belongs to the NF-κB family and forms a heterodimer with p50. RelA contains the transactivation domain, while p50 modulate the DNA-binding affinity of RelA. RelA/p50 is normally sequestered in the cytoplasm in association with the inhibitor IκBα, which binds and masks the NLS. Harhaj et al. showed that RelA contains an NES that keeps RelA in cytoplasm when expressed alone. However, when co-expressed with p50, both proteins become nuclear. Note that the author didn't specify the residue numbers used in the experiment. AA 436-445 was not definite. Maybe they used 421-450. Use this with caution.
[1]. "Regulation of RelA subcellular localization by a putative nuclear export signal and p50"
Harhaj, E.W., Sun, S.C. (1999)
Mol Cell Biol,
19:7088-7095
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.