Summary for HDAC1 (NES ID: 252)
Full Name
Histone deacetylase 1
Alternative Names
Short name=HD1, EC=3.5.1.98, RPD3L1
Organism
Homo sapiens (Human)
Experimental Evidence for CRM1-mediated Export
LMB Sensitive, Binds CRM1
Mutations That Affect Nuclear Export
*highlighted yellow in the full sequence
L158A/L161A/L164A
Mutations That Affect CRM1 Binding
Unknown
Functional Export Signals
Undetermined
Secondary Structure of Export Signal
Unknown
Other Residues Important for Export
Unknown
Sequence
Show FASTA Format
>gi|2498443|sp|Q13547.1|HDAC1_HUMAN RecName: Full=Histone deacetylase 1; Short=HD1
MAQTQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSD
DYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLH
HAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGD
LRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKG
HAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNM
TNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEDDPDKRISICSSDKRIACEEEF
SDSEEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEEKPEAKGVKEEVKLA
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 988889865288822098664345699999884201111222101222223012799999
Pred: CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCCCCC
AA: MAQTQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
10 20 30 40 50 60
Conf: 687730296568743002699975699986201246899877631000010367830789
Pred: HHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHH
AA: AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS
70 80 90 100 110 120
Conf: 887305797558855776422223577765113479999999641075168992136679
Pred: HHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
AA: AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
130 140 150 160 170 180
Conf: 973211002582489741346878998754421357887002750359889993667666
Pred: CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHH
AA: DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
190 200 210 220 230 240
Conf: 378999877650875299910897788875443112444126577875733985588315
Pred: HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECC
AA: FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
250 260 270 280 290 300
Conf: 773223310013333221049889999998654322268800003899888999289999
Pred: CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
AA: GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
310 320 330 340 350 360
Conf: 999999985149999997665237999999999998878997665534567533467787
Pred: HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: KIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEDDPDKRISICSSDKRIACEEEF
370 380 390 400 410 420
Conf: 788222478977884211101345532335991001232201004577633436400101
Pred: CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHC
AA: SDSEEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEEKPEAKGVKEEVK
430 440 450 460 470 480
Conf: 69
Pred: CC
AA: LA
Show Conservation Score by AL2CO
1 M -1.000 *
2 A -1.000 *
3 Q -1.000 *
4 T -1.000 *
5 Q -1.000 *
6 G -1.000 *
7 T -0.966
8 R -0.271
9 R -0.773
10 K -0.412
11 V 0.713
12 C -0.350
13 Y 1.196
14 Y 0.395
15 Y 0.117
16 D 0.024
17 G -0.799
18 D -0.713
19 V -0.105
20 G -0.015
21 N -0.820
22 Y -0.002
23 Y -0.555
24 Y 1.054
25 G -0.338
26 Q -1.126
27 G -1.031
28 H 1.266
29 P 0.143
30 M 1.273
31 K 1.098
32 P 1.595
33 H -0.571
34 R 1.261
35 I -0.028
36 R -0.576
37 M 0.334
38 T 0.079
39 H 0.138
40 N -0.534
41 L 1.519
42 L 0.307
43 L -0.728
44 N -0.561
45 Y 0.851
46 G -0.599
47 L 0.282
48 Y -0.519
49 R -0.766
50 K -0.908
51 M 0.683
52 E -0.828
53 I -0.444
54 Y -0.735
55 R -0.898
56 P -0.104
57 H -1.113
58 K -0.750
59 A -0.100
60 N -0.915
61 A -1.175
62 E -1.180
63 E -0.583
64 M 0.256
65 T -0.731
66 K -0.879
67 Y 0.776
68 H 1.921
69 S -0.487
70 D -0.803
71 D 0.446
72 Y 1.487
73 I 0.498
74 K -0.827
75 F 0.601
76 L 1.220
77 R -0.879
78 S -0.968
79 I 0.084
80 R -0.626
81 P -0.651
82 D -0.781
83 N -0.736
84 M -0.945
85 S -1.192
86 E -1.011
87 Y -1.114
88 S -1.077
89 K -1.131
90 Q -1.085
91 M -1.012
92 Q -1.136
93 R -1.046
94 F 0.018
95 N -0.431
96 V -0.377
97 G -0.871
98 E -0.545
99 D 0.662
100 C 0.891
101 P 1.910
102 V -0.200
103 F 0.823
104 D -0.739
105 G 0.255
106 L 0.152
107 F 0.070
108 E -0.456
109 F 1.227
110 C -0.199
111 Q -0.461
112 L -0.639
113 S -0.122
114 T 0.154
115 G 1.196
116 G 0.843
117 S 1.504
118 V 0.464
119 A -0.622
120 S 0.567
121 A 0.296
122 V -1.058
123 K -0.459
124 L 0.862
125 N -0.425
126 K -0.914
127 Q -0.560
128 Q -1.149
129 T -0.331
130 D 0.604
131 I 0.310
132 A 0.273
133 V 0.617
134 N 1.538
135 W 1.651
136 A 0.354
137 G 1.866
138 G 1.866
139 L 0.874
140 H 1.197
141 H 1.162
142 A 1.075
143 K 0.567
144 K 0.028
145 S -0.776
146 E -0.211
147 A 0.717
148 S 1.042
149 G 1.871
150 F 1.519
151 C 1.872
152 Y 1.690
153 V 0.122
154 N 1.300
155 D 1.901
156 I 0.436
157 V 1.198
158 L 0.635
159 A 0.565
160 I 0.526
161 L 0.477
162 E 0.006
163 L 0.754
164 L 1.901
165 K 0.351
166 Y -0.890
167 H -0.314
168 Q -0.652
169 R 1.890
170 V 1.646
171 L 0.826
172 Y 2.292
173 I 0.653
174 D 2.292
175 I 1.008
176 D 2.292
177 I 0.231
178 H 1.887
179 H 1.889
180 G 2.292
181 D 1.861
182 G 1.859
183 V 1.843
184 E 1.198
185 E 0.475
186 A 1.824
187 F 2.292
188 Y 0.170
189 T -0.862
190 T 0.939
191 D 0.482
192 R 1.524
193 V 1.761
194 M 0.280
195 T 1.196
196 V 0.051
197 S 2.292
198 F 0.901
199 H 1.886
200 K 0.502
201 Y 0.713
202 G 0.150
203 E -0.462
204 Y 0.810
205 F 1.903
206 P 1.886
207 G 0.268
208 T 1.591
209 G 0.979
210 D -0.789
211 L -0.831
212 R -1.078
213 D 0.386
214 I -0.699
215 G 1.901
216 A -1.150
217 G -0.779
218 K -1.003
219 G 1.883
220 K -0.150
221 Y -0.658
222 Y 0.812
223 A 0.733
224 V 0.175
225 N 2.292
226 Y 0.198
227 P 1.793
228 L 0.698
229 R -0.751
230 D -0.050
231 G 0.673
232 I 0.284
233 D -0.013
234 D 1.040
235 E -1.061
236 S -0.866
237 Y 0.840
238 E -1.075
239 A -1.110
240 I 0.004
241 F 0.937
242 K -0.506
243 P -0.739
244 V 0.769
245 M 0.488
246 S -0.922
247 K -1.090
248 V 0.190
249 M -0.035
250 E -0.866
251 M -1.046
252 F 1.021
253 Q -0.592
254 P 1.907
255 S -0.374
256 A 0.111
257 V 0.598
258 V 0.253
259 L 0.049
260 Q 1.119
261 C 0.555
262 G 1.904
263 S 0.392
264 D 1.228
265 S 1.226
266 L 0.797
267 S -0.295
268 G -0.706
269 D 1.876
270 R 0.551
271 L 1.053
272 G 1.893
273 C -0.782
274 F 1.038
275 N 0.463
276 L 0.620
277 T 0.509
278 I -0.663
279 K -0.720
280 G 0.991
281 H 1.227
282 A 0.702
283 K -0.670
284 C 1.283
285 V 0.171
286 E -0.407
287 F -0.253
288 V 0.043
289 K -0.228
290 S -0.440
291 F -0.250
292 N -0.331
293 L 0.113
294 P 1.893
295 M 0.148
296 L 0.650
297 M -0.174
298 L 0.248
299 G 1.892
300 G 2.292
301 G 1.852
302 G 2.292
303 Y 1.259
304 T 0.110
305 I -0.309
306 R -0.620
307 N 1.038
308 V 1.401
309 A 0.449
310 R 1.023
311 C 0.414
312 W 1.893
313 T 0.194
314 Y -0.430
315 E 1.366
316 T 1.337
317 A 0.638
318 V -0.354
319 A 0.192
320 L -0.574
321 D -0.181
322 T -1.084
323 E -1.009
324 I 0.186
325 P -0.675
326 N -0.901
327 E -0.887
328 L 0.377
329 P 0.820
330 Y -1.203
331 N -0.881
332 D -0.864
333 Y -0.354
334 F -0.751
335 E -0.663
336 Y -0.446
337 F 0.628
338 G -0.875
339 P 0.066
340 D -0.516
341 F -0.408
342 K -0.928
343 L 0.353
344 H -0.794
345 I -0.677
346 S -0.996
347 P -0.983
348 S -1.122
349 N -0.750
350 M -0.917
351 T -1.033
352 N 1.071
353 Q -1.023
354 N 1.362
355 T -0.655
356 N -1.073
357 E -0.902
358 Y -0.871
359 L 0.335
360 E -0.701
361 K -0.938
362 I -0.490
363 K -0.707
364 Q -1.051
365 R -1.162
366 L 0.062
367 F -0.958
368 E -0.736
369 N -0.870
370 L 0.604
371 R -0.543
372 M -1.216
373 L -0.374
374 P -0.967
375 H -0.879
376 A -0.266
377 P 0.643
378 G 0.240
379 V -0.114
380 Q -0.336
381 M -0.522
382 Q -1.099
383 A -0.979
384 I -0.839
385 P -0.533
386 E -0.993
387 D -1.099
388 A -1.261
389 I -1.094
390 P -1.196
391 E -1.229
392 E -1.248
393 S -1.257
394 G -1.115
395 D -1.311
396 E -1.196
397 D -1.015
398 E -1.153
399 D -1.051
400 D -1.024
401 P -1.091
402 D -0.832
403 K -1.074
404 R -1.146
405 I -1.283
406 S -1.150
407 I -1.246
408 C -1.299
409 S -1.232
410 S -1.316
411 D -1.090
412 K -1.157
413 R -1.232
414 I -1.100
415 A -1.201
416 C -1.155
417 E -0.947
418 E -1.152
419 E -1.039
420 F -1.100
421 S -1.085
422 D -0.643
423 S -1.029
424 E -0.884
425 E -1.038
426 E -0.912
427 G -1.011
428 E -1.040
429 G -1.159
430 G -1.093
431 R -1.237
432 K -1.033
433 N -1.159
434 S -1.196
435 S -1.253
436 N -1.130
437 F -1.255
438 K -1.007
439 K -1.028
440 A -1.100
441 K -1.065
442 R -1.000 *
443 V -1.000 *
444 K -1.000 *
445 T -1.000 *
446 E -1.000 *
447 D -1.000 *
448 E -1.000 *
449 K -1.000 *
450 E -1.000 *
451 K -1.000 *
452 D -1.000 *
453 P -1.000 *
454 E -1.000 *
455 E -1.000 *
456 K -1.000 *
457 K -1.000 *
458 E -1.000 *
459 V -1.000 *
460 T -1.000 *
461 E -1.000 *
462 E -1.000 *
463 E -1.000 *
464 K -1.000 *
465 T -1.000 *
466 K -1.000 *
467 E -1.000 *
468 E -1.000 *
469 K -1.000 *
470 P -1.000 *
471 E -1.000 *
472 A -1.000 *
473 K -1.000 *
474 G -1.000 *
475 V -1.000 *
476 K -1.000 *
477 E -1.000 *
478 E -1.000 *
479 V -1.000 *
480 K -1.000 *
481 L -1.000 *
482 A -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 252.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MAQTQGTRRK VCYYYDGDVG NYYYGQGHPM KPHRIRMTHN LLLNYGLYRK MEIYRPHKAN
70 80 90 100 110 120
AEEMTKYHSD DYIKFLRSIR PDNMSEYSKQ MQRFNVGEDC PVFDGLFEFC QLSTGGSVAS
130 140 150 160 170 180
AVKLNKQQTD IAVNWAGGLH HAKKSEASGF CYVNDIVLAI LELLKYHQRV LYIDIDIHHG
190 200 210 220 230 240
DGVEEAFYTT DRVMTVSFHK YGEYFPGTGD LRDIGAGKGK YYAVNYPLRD GIDDESYEAI
250 260 270 280 290 300
FKPVMSKVME MFQPSAVVLQ CGSDSLSGDR LGCFNLTIKG HAKCVEFVKS FNLPMLMLGG
310 320 330 340 350 360
GGYTIRNVAR CWTYETAVAL DTEIPNELPY NDYFEYFGPD FKLHISPSNM TNQNTNEYLE
370 380 390 400 410 420
KIKQRLFENL RMLPHAPGVQ MQAIPEDAIP EESGDEDEDD PDKRISICSS DKRIACEEEF
430 440 450 460 470 480
SDSEEEGEGG RKNSSNFKKA KRVKTEDEKE KDPEEKKEVT EEEKTKEEKP EAKGVKEEVK
LA
3D Structures in PDB
Not Available
Comments
HDAC1 is a transcriptional regulator of the histone deacetylase family, subfamily 1 and is catalysis the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). It plays an important role in transcriptional regulation (associated with transcriptional silencing), cell cycle progression and developmental events. Kim et al. (Nat Neurosci. 2010 Feb;13(2):180-9) demonstrated that calcium-mediated nuclear export of HDAC1 as a critical modulator of impaired mitochondrial transport and the induction of axonal damage in inflammatory demyelination in a cell type specific manner (in neurons).
References
[1]. "HDAC1 nuclear export induced by pathological conditions is essential for the onset of axonal damage."
Kim JY, Shen S, Dietz K, He Y, Howell O, Reynolds R, Casaccia P. (2010)
Nature Neurosciences,
13(2):180-189
PubMedUser Input
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