Nucleosome assembly protein
UniProt
Show FASTA Format
>gi|547995|sp|P25293.2|NAP1_YEAST RecName: Full=Nucleosome assembly protein
MSDPIRTKPKSSMQIDNAPTPHNTPASVLNPSYLKNGNPVRAQAQEQDDKIGTINEEDILANQPLLLQSI
QDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIIS
GQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEV
LEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNA
HNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLALDYSIGEQLKD
KLIPRAVDWFTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPECKQS
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 998457999998999999999998899889786547999863111355534797636674
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
AA: MSDPIRTKPKSSMQIDNAPTPHNTPASVLNPSYLKNGNPVRAQAQEQDDKIGTINEEDIL
10 20 30 40 50 60
Conf: 109489999997534146899885457988799999999987689999999999999999
Pred: HCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: ANQPLLLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFEL
70 80 90 100 110 120
Conf: 999997404057977532246678996787306201111111222334675312876556
Pred: HHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
AA: ENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEE
130 140 150 160 170 180
Conf: 888862489897417433330145365876611351038875899995089999658999
Pred: CCCCCHHHHHHHHHCCHHHHHCCCCCCHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCC
AA: QVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSAN
190 200 210 220 230 240
Conf: 987564128989730358999998876874580220039997137777730689999961
Pred: CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEEEECCCCCCCCCE
AA: PFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQV
250 260 270 280 290 300
Conf: 468650358998778999999999988431799999996525332100124345610013
Pred: EEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCC
AA: RTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWF
310 320 330 340 350 360
Conf: 322112345674222366555433346899888888632237989999999987689
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: TGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPECKQS
370 380 390 400 410
Show Conservation Score by AL2CO
1 M -1.000 *
2 S -1.000 *
3 D -1.000 *
4 P -1.000 *
5 I -1.000 *
6 R -1.000 *
7 T -1.000 *
8 K -1.000 *
9 P -1.000 *
10 K -1.000 *
11 S -1.000 *
12 S -1.000 *
13 M -1.000 *
14 Q -1.000 *
15 I -1.000 *
16 D -1.000 *
17 N -1.000 *
18 A -1.000 *
19 P -1.000 *
20 T -1.000 *
21 P -1.000 *
22 H -1.000 *
23 N -1.000 *
24 T -1.000 *
25 P -1.000 *
26 A -1.000 *
27 S -1.000 *
28 V -1.000 *
29 L -1.000 *
30 N -1.000 *
31 P -1.000 *
32 S -1.000 *
33 Y -1.000 *
34 L -1.000 *
35 K -1.000 *
36 N -1.000 *
37 G -1.000 *
38 N -1.000 *
39 P -1.000 *
40 V -1.000 *
41 R -1.000 *
42 A -1.000 *
43 Q -1.000 *
44 A -1.000 *
45 Q -1.000 *
46 E -1.000 *
47 Q -1.000 *
48 D -1.000 *
49 D -1.000 *
50 K -1.000 *
51 I -1.000 *
52 G -1.000 *
53 T -1.000 *
54 I -1.000 *
55 N -1.000 *
56 E -1.000 *
57 E -1.000 *
58 D -1.000 *
59 I -0.608
60 L -0.295
61 A -0.506
62 N -0.663
63 Q -0.172
64 P -0.087
65 L -0.646
66 L -0.293
67 L -0.074
68 Q 0.114
69 S -0.313
70 I 0.380
71 Q -0.324
72 D -0.075
73 R -0.040
74 L 0.695
75 G -0.277
76 S -0.615
77 L 0.100
78 V -0.458
79 G -0.271
80 Q -0.628
81 D -0.392
82 S -0.366
83 G -0.104
84 Y -0.327
85 V 0.295
86 G -0.312
87 G -0.635
88 L 1.667
89 P 0.503
90 K -0.819
91 N -0.667
92 V 0.365
93 K 0.030
94 E -0.708
95 K 0.180
96 L 1.374
97 L -0.967
98 S -0.256
99 L 3.027
100 K 0.335
101 T -0.618
102 L 0.545
103 Q 0.509
104 S -0.888
105 E 0.163
106 L -0.684
107 F -1.048
108 E -0.277
109 V 0.293
110 E -0.376
111 K -0.570
112 E 0.051
113 F 1.527
114 Q -0.579
115 V -0.503
116 E 0.798
117 M -0.336
118 F -0.681
119 E -0.342
120 L 1.519
121 E 0.663
122 N -0.831
123 K 0.314
124 F 0.755
125 L -0.731
126 Q -0.613
127 K -0.257
128 Y -0.579
129 K -0.659
130 P 0.075
131 I 0.043
132 W 0.066
133 E -0.338
134 Q -0.089
135 R 1.401
136 S -0.728
137 R -0.366
138 I 0.391
139 I 0.459
140 S -0.689
141 G 0.847
142 Q -0.792
143 E -0.787
144 Q -0.007
145 P -0.042
146 K -0.195
147 P -0.582
148 E -0.484
149 Q -0.492
150 I -0.738
151 A -0.617
152 K -0.894
153 G -0.613
154 Q -1.174
155 E -0.891
156 I -1.005
157 V -0.853
158 E -0.549
159 S -0.930
160 L -0.932
161 N -0.954
162 E -0.701
163 T -0.888
164 E -0.924
165 L -1.026
166 L -1.039
167 V -1.142
168 D -0.759
169 E -0.891
170 E -0.895
171 E -0.924
172 K -0.785
173 A -0.923
174 Q -1.010
175 N -1.076
176 D -0.523
177 S -0.732
178 E -0.804
179 E -0.680
180 E -0.554
181 Q -0.685
182 V -0.821
183 K -0.642
184 G 1.350
185 I 1.791
186 P 2.102
187 S -0.398
188 F 3.317
189 W 3.503
190 L 0.949
191 T -0.266
192 A 0.854
193 L 1.947
194 E -0.156
195 N 0.146
196 L -0.453
197 P -0.868
198 I -0.882
199 V 0.461
200 C -0.248
201 D -0.472
202 T -0.339
203 I 1.824
204 T -0.101
205 D -0.224
206 R -0.153
207 D 3.919
208 A -0.241
209 E 0.011
210 V 1.034
211 L 1.787
212 E -0.490
213 Y -0.341
214 L 2.231
215 Q -0.764
216 D 2.224
217 I 1.778
218 G 0.230
219 L -0.530
220 E -0.790
221 Y -1.023
222 L -0.699
223 T -0.413
224 D -0.154
225 G -0.529
226 R -0.770
227 P -0.791
228 G 0.624
229 F 0.536
230 K -0.430
231 L 1.431
232 L -0.689
233 F 2.013
234 R -0.816
235 F 3.501
236 D -0.561
237 S -1.000 *
238 S -0.032
239 A -0.220
240 N 1.590
241 P -0.135
242 F 1.691
243 F 1.772
244 T -0.313
245 N 1.042
246 D -0.426
247 I -0.318
248 L 1.936
249 C -0.039
250 K 2.640
251 T -0.441
252 Y 2.396
253 F -0.843
254 Y 0.564
255 Q -0.750
256 K -0.984
257 E -0.510
258 L -0.395
259 G -0.475
260 Y -0.933
261 S -0.606
262 G -0.223
263 D 0.279
264 F -0.347
265 I -0.620
266 Y 0.400
267 D -0.297
268 H -0.308
269 A 0.261
270 E -0.280
271 G 1.037
272 C 0.276
273 E -0.486
274 I 2.689
275 S -0.332
276 W 4.356
277 K -0.452
278 D -0.168
279 N -0.214
280 A 0.205
281 H -0.080
282 N 0.603
283 V 0.850
284 T 0.016
285 V 0.152
286 D -0.554
287 L -0.556
288 E -0.469
289 M -0.526
290 R 0.082
291 K -0.090
292 Q -0.058
293 R 0.206
294 N -0.326
295 K 0.435
296 T -0.724
297 T -0.286
298 K 0.465
299 Q -0.651
300 V -0.413
301 R 0.155
302 T -0.292
303 I 0.306
304 E -0.388
305 K 0.045
306 I -0.495
307 T -0.431
308 P -0.326
309 I -0.483
310 E -0.120
311 S 1.793
312 F 3.359
313 F 3.460
314 N 0.198
315 F 0.999
316 F 2.631
317 D -0.259
318 P -0.032
319 P -0.337
320 K -0.804
321 I -0.744
322 Q -0.648
323 N -0.662
324 E -0.758
325 D -0.489
326 Q -0.927
327 D -0.680
328 E -0.682
329 E -0.709
330 L -0.774
331 E -0.769
332 E -0.623
333 D -0.050
334 L -0.532
335 E -0.338
336 E -0.733
337 R -0.838
338 L 0.055
339 A -0.164
340 L -0.899
341 D 1.717
342 Y 1.020
343 S -0.230
344 I 0.511
345 G 2.052
346 E -0.577
347 Q -0.743
348 L 1.823
349 K 0.203
350 D 0.508
351 K -0.329
352 L 2.049
353 I 2.065
354 P 1.752
355 R 0.108
356 A 2.664
357 V 1.652
358 D -0.189
359 W 0.864
360 F 3.065
361 T 0.989
362 G 1.856
363 A -0.212
364 A 0.371
365 L -0.589
366 E -0.546
367 F -0.855
368 E -0.335
369 F -0.822
370 E -0.573
371 E -0.519
372 D -0.612
373 E -0.608
374 E -0.825
375 E -0.242
376 A -0.703
377 D -0.526
378 E -0.362
379 D -0.705
380 E -0.470
381 D -0.063
382 E -0.399
383 E -0.548
384 E -0.495
385 D -0.219
386 D -0.581
387 D -0.179
388 H -0.822
389 G -0.277
390 L -0.523
391 E -0.525
392 D -0.538
393 D -0.693
394 D -0.670
395 G -0.472
396 E -0.043
397 S -0.344
398 A -0.544
399 E -0.666
400 E -1.000 *
401 Q -1.000 *
402 D -1.000 *
403 D -1.000 *
404 F -1.000 *
405 A -1.000 *
406 G -1.000 *
407 R -1.000 *
408 P -1.000 *
409 E -1.000 *
410 Q -1.000 *
411 A -1.000 *
412 P -1.000 *
413 E -1.000 *
414 C -1.000 *
415 K -1.000 *
416 Q -1.000 *
417 S -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 254.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MSDPIRTKPK SSMQIDNAPT PHNTPASVLN PSYLKNGNPV RAQAQEQDDK IGTINEEDIL
70 80 90 100 110 120
ANQPLLLQSI QDRLGSLVGQ DSGYVGGLPK NVKEKLLSLK TLQSELFEVE KEFQVEMFEL
130 140 150 160 170 180
ENKFLQKYKP IWEQRSRIIS GQEQPKPEQI AKGQEIVESL NETELLVDEE EKAQNDSEEE
190 200 210 220 230 240
QVKGIPSFWL TALENLPIVC DTITDRDAEV LEYLQDIGLE YLTDGRPGFK LLFRFDSSAN
250 260 270 280 290 300
PFFTNDILCK TYFYQKELGY SGDFIYDHAE GCEISWKDNA HNVTVDLEMR KQRNKTTKQV
310 320 330 340 350 360
RTIEKITPIE SFFNFFDPPK IQNEDQDEEL EEDLEERLAL DYSIGEQLKD KLIPRAVDWF
370 380 390 400 410
TGAALEFEFE EDEEEADEDE DEEEDDDHGL EDDDGESAEE QDDFAGRPEQ APECKQS
2Z2R (X-Ray,3.20 Å resolution)
Nap1p is a protein involved in the deposition and transport of histones H2A and H2B. Nap1p binds directly to Kap114p and increase the affinity of Kap114p for the H2A and H2B. Mosammaparast et al. showed that Nap1p is a shuttling protein. The N-terminal contains a CRM1 dependent NES, however this region is located inside the folded domain of Nap1, and is inaccessible for CRM1 binding. Mislocalization in Xpo1-1 temperature sensitive strains is weak and thus this NES is in-doubt.
[1]. "A role for nucleosome assembly protein 1 in the
nuclear transport of histones H2A and H2B"
Mosammaparast N, Ewart CS, Pemberton LF (2002)
EMBO J,
21:6527-38
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.