Oryza sativa subsp. japonica
Show FASTA Format
>gi|122212063|sp|Q336P7|Q336P7_ORYSA NMD3 family protein, expressed (Os10g0573900 protein)
MLPGSAAPAAGSGMFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSY
LQPPRSWLRAGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLRREVFNAVVLEQT
HPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLLLKHGQASLALRVAAAPGGLDFF
FGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVYNYKHTFSVEICPICREDLIALSPQVSRDLGGL
GPIVLCIKVTNAIALLDPLTLRVHHLEEKKYRVYNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLA
YAQVARVSDFGKNDTMFTVRTHLGHLLNPGDLALGYDLYGANLNDDDMDTAMMRHSLPEVILVKKSFAKR
PRTRRWKLKRLPMEEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSEMASTIGDDVP
TVPIEELIEDLSLGDDEEEDEGGEGNQHAVMVG
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 999998898999766788874414314789877889966527766152465668875256
Pred: CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEE
AA: MLPGSAAPAAGSGMFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAA
10 20 30 40 50 60
Conf: 500768643112898647659998689999999833933455221101315771466663
Pred: EEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEECCCEEEEECCCCCE
AA: VVYCPDCTSYLQPPRSWLRAGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKR
70 80 90 100 110 120
Conf: 699999853321271578669999999846258034420799960699970227876310
Pred: EEEEEEEEEEEECCEEEEEEEEEEEEEECCCCCHHHHHCCCCCCCEEEEECCCCCCCCCC
AA: LRLKLRLRREVFNAVVLEQTHPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRT
130 140 150 160 170 180
Conf: 899999999820001012164307701065056226999999852029335863331221
Pred: HHHHHHHHHHHHCCCCCCCEEEECCCCCEECCCHHHHHHHHHHHHCCCCEEEEECCEEEE
AA: FLYLEQLLLKHGQASLALRVAAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVS
190 200 210 220 230 240
Conf: 257888044699999874355769799919023421089655899998414179822676
Pred: CCCCCCEEEEEEEEEEEECCCCCCCEEEECHHHHHHCCCCCCEEEEEEECCEEEEECCCC
AA: HDTKSNVYNYKHTFSVEICPICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLT
250 260 270 280 290 300
Conf: 513630121001247732358568306999987515986201476311120799740468
Pred: CCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCC
AA: LRVHHLEEKKYRVYNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDF
310 320 330 340 350 360
Conf: 889839999603578789999599861499989993556532079988099982026889
Pred: CCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCC
AA: GKNDTMFTVRTHLGHLLNPGDLALGYDLYGANLNDDDMDTAMMRHSLPEVILVKKSFAKR
370 380 390 400 410 420
Conf: 766652002443102100001100101033599999863008101100111127888666
Pred: CCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCC
AA: PRTRRWKLKRLPMEEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSE
430 440 450 460 470 480
Conf: 6687899999999776620279899853247788875455469
Pred: CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
AA: MASTIGDDVPTVPIEELIEDLSLGDDEEEDEGGEGNQHAVMVG
490 500 510 520
Show Conservation Score by AL2CO
1 M -1.000 *
2 L -1.000 *
3 P -1.000 *
4 G -1.000 *
5 S -1.000 *
6 A -1.000 *
7 A -1.000 *
8 P -1.000 *
9 A -1.000 *
10 A -1.000 *
11 G -1.000 *
12 S -1.000 *
13 G -1.000 *
14 M -1.000 *
15 F -1.000 *
16 V -1.000 *
17 P -0.479
18 T -0.966
19 Q -1.080
20 T -0.850
21 V -1.142
22 G -0.358
23 T -1.092
24 V 0.843
25 L 0.171
26 C 4.059
27 C 0.645
28 I -0.656
29 C 4.059
30 G 2.015
31 V -0.313
32 A -0.773
33 M 0.304
34 Q -0.842
35 P -0.131
36 N 0.431
37 P -0.776
38 A -0.511
39 N 0.336
40 M 0.276
41 C 3.196
42 A -1.080
43 R -0.921
44 C 3.626
45 I 0.597
46 R -0.592
47 A -0.808
48 R -0.171
49 V -0.372
50 D 0.983
51 I 0.662
52 T 0.722
53 E -0.400
54 G -0.328
55 V 1.631
56 P -0.446
57 R 0.237
58 H -0.342
59 A -1.038
60 A -0.716
61 V 1.242
62 V -1.119
63 Y -0.673
64 C 4.059
65 P 0.296
66 D -0.626
67 C 4.059
68 T -0.904
69 S 0.422
70 Y 0.985
71 L -0.535
72 Q -0.981
73 P -0.110
74 P 0.320
75 R -0.680
76 S -1.000
77 W 2.198
78 L -0.374
79 R -1.247
80 A 0.243
81 G -0.658
82 P -0.107
83 E 1.086
84 S 1.718
85 P 0.022
86 E 2.211
87 L 1.554
88 M 2.049
89 Q 0.102
90 I 0.265
91 L 1.626
92 L 0.999
93 R 0.569
94 R 0.052
95 L 0.254
96 N -0.396
97 R -1.000 *
98 P -1.000 *
99 L -1.000 *
100 A -0.127
101 R -0.719
102 L -0.873
103 R -0.497
104 V -0.176
105 S -0.487
106 L 1.085
107 S 0.009
108 A 0.572
109 A 1.277
110 E -0.653
111 F 0.801
112 V 0.134
113 F 0.693
114 S 1.746
115 E 2.046
116 P 0.648
117 H 1.202
118 S 1.359
119 K 0.937
120 R 1.189
121 L 0.725
122 R -0.194
123 L 0.807
124 K -0.498
125 L 0.744
126 R -0.331
127 L 1.374
128 R 0.004
129 R -0.145
130 E 0.198
131 V -0.310
132 F -0.910
133 N -0.734
134 A -0.209
135 V -0.449
136 V -0.367
137 L 0.733
138 E 0.651
139 Q 0.216
140 T -0.809
141 H -0.362
142 P -0.626
143 V 0.654
144 E -0.315
145 F 0.625
146 T -0.451
147 V 0.752
148 H -0.963
149 D -1.082
150 R -0.966
151 L -0.073
152 C 4.059
153 D -0.871
154 A -0.664
155 C 4.059
156 A -0.805
157 R 0.387
158 A -1.010
159 Q -0.504
160 S 0.493
161 N -0.173
162 P -1.000 *
163 D -0.103
164 Q -0.844
165 W 1.404
166 V -0.826
167 A 0.381
168 V -0.525
169 V 1.075
170 Q 1.460
171 L 0.825
172 R 2.515
173 Q 1.234
174 H 0.430
175 V -0.238
176 P -0.992
177 H -0.323
178 R 0.746
179 R 1.348
180 T 0.399
181 F 0.593
182 L 0.283
183 Y -0.410
184 L 0.881
185 E 2.458
186 Q 0.328
187 L -0.198
188 L 1.059
189 L 0.411
190 K 0.163
191 H -0.010
192 G -0.301
193 Q -0.140
194 A -0.761
195 S -0.924
196 L -0.921
197 A -0.424
198 L 0.047
199 R -0.344
200 V 1.316
201 A -0.487
202 A -0.798
203 A -1.079
204 P -0.465
205 G -0.027
206 G 3.119
207 L 0.713
208 D 1.959
209 F 1.277
210 F 0.404
211 F 1.433
212 G -0.936
213 S -0.710
214 R -0.373
215 S -0.383
216 H -0.684
217 A 1.129
218 A -1.055
219 R -0.193
220 L 0.954
221 V 0.041
222 D -0.042
223 F 0.964
224 L 1.129
225 A -1.031
226 T -0.717
227 V -0.985
228 A -0.267
229 P 0.695
230 V 0.047
231 Q -0.230
232 T -0.842
233 Q -0.648
234 T -1.281
235 A 0.664
236 K -0.557
237 Q 0.301
238 L 1.046
239 V 0.268
240 S 0.107
241 H -0.829
242 D 1.475
243 T -1.119
244 K -0.084
245 S 0.046
246 N -0.035
247 V -0.454
248 Y -0.712
249 N -0.773
250 Y -0.622
251 K 0.751
252 H -0.596
253 T 0.524
254 F -0.071
255 S -0.556
256 V 0.322
257 E 0.062
258 I 1.401
259 C -0.001
260 P -0.307
261 I 0.643
262 C 0.296
263 R 0.401
264 E 0.593
265 D 1.269
266 L 1.044
267 I 0.868
268 A -0.258
269 L 0.857
270 S 0.010
271 P -1.073
272 Q -0.574
273 V -0.476
274 S -0.464
275 R -0.834
276 D -0.800
277 L -0.745
278 G 1.237
279 G -0.277
280 L -0.358
281 G -0.503
282 P 0.033
283 I 0.805
284 V -0.402
285 L 1.315
286 C 1.380
287 I -0.918
288 K 0.799
289 V 1.715
290 T 0.094
291 N -0.386
292 A -0.941
293 I 1.083
294 A -1.011
295 L 0.818
296 L 0.287
297 D 1.031
298 P 0.150
299 L -1.071
300 T 0.318
301 L -0.072
302 R -0.242
303 V -1.206
304 H -0.635
305 H -0.547
306 L 0.969
307 E -0.760
308 E -0.563
309 K -1.101
310 K -1.018
311 Y 2.030
312 R 0.691
313 V -0.071
314 Y -0.820
315 N -0.211
316 F 0.556
317 K -1.162
318 A -0.049
319 A 0.527
320 L -0.851
321 T -0.530
322 S -0.944
323 K -0.701
324 Q -0.226
325 L 0.268
326 V -0.461
327 E 0.117
328 Y 1.468
329 I -0.398
330 V 2.612
331 L 0.532
332 D -0.058
333 I 0.032
334 E -0.410
335 H -1.060
336 E -1.171
337 S -1.288
338 P -1.083
339 E -1.222
340 I -1.349
341 T -1.162
342 I -1.385
343 D -1.114
344 G -0.641
345 S -1.144
346 R -1.023
347 Y -0.664
348 Q -1.187
349 L -0.292
350 A -0.321
351 Y -0.728
352 A 0.155
353 Q -0.699
354 V 1.020
355 A -0.681
356 R 0.150
357 V -0.752
358 S -0.791
359 D -0.250
360 F -0.653
361 G -0.408
362 K -1.146
363 N -0.638
364 D -0.410
365 T -0.945
366 M -0.867
367 F -0.153
368 T -0.836
369 V 0.230
370 R -0.158
371 T 1.020
372 H 1.526
373 L 1.405
374 G 1.036
375 H -0.653
376 L -0.463
377 L 0.856
378 N -0.117
379 P -0.103
380 G 1.733
381 D 0.110
382 L -1.089
383 A 0.547
384 L -0.652
385 G 2.015
386 Y 1.975
387 D -0.503
388 L 0.762
389 Y -1.153
390 G -0.740
391 A -0.802
392 N 0.243
393 L -0.691
394 N -0.043
395 D -0.214
396 D -1.122
397 D -0.939
398 M -0.518
399 D -0.172
400 T -1.110
401 A -1.104
402 M -1.270
403 M -1.236
404 R -0.709
405 H -1.021
406 S -1.089
407 L -0.392
408 P -0.009
409 E 0.105
410 V 0.823
411 I 0.724
412 L 1.210
413 V 1.034
414 K 0.363
415 K 1.296
416 S -1.152
417 F -0.250
418 A -0.810
419 K -0.257
420 R -0.593
421 P -1.043
422 R -0.527
423 T -0.904
424 R 0.555
425 R -1.003
426 W -0.188
427 K 0.156
428 L 0.130
429 K 0.284
430 R -0.360
431 L -0.031
432 P -1.020
433 M -1.038
434 E -0.440
435 E -1.078
436 D -0.849
437 A -0.963
438 V -1.230
439 N -0.986
440 K -1.082
441 A -0.984
442 K -0.931
443 G -1.216
444 E -0.975
445 L -1.128
446 E -0.699
447 K -0.942
448 R -1.101
449 A -0.646
450 D -0.886
451 E 1.410
452 Y -0.192
453 E -0.475
454 E -1.117
455 F 2.200
456 L -0.094
457 R 0.355
458 D 1.249
459 L 1.208
460 E 0.463
461 H -0.530
462 N 1.036
463 S -0.686
464 D -0.581
465 I 0.133
466 R 0.184
467 F -0.623
468 Q -0.595
469 I 0.906
470 D -0.468
471 L 0.523
472 Y 1.255
473 K -0.267
474 D -0.422
475 E -0.953
476 D -1.015
477 Y -1.337
478 R -1.290
479 S -1.063
480 E -0.944
481 M -1.201
482 A -0.958
483 S -1.082
484 T -1.008
485 I -0.694
486 G -0.364
487 D -0.500
488 D -0.518
489 V -1.037
490 P 0.364
491 T -1.018
492 V 0.333
493 P -0.345
494 I 0.765
495 E 0.007
496 E 1.034
497 L 1.615
498 I 1.692
499 E 0.812
500 D 0.802
501 L 0.877
502 S -0.608
503 L 0.482
504 G -0.708
505 D -0.249
506 D -0.812
507 E -1.000 *
508 E -1.000 *
509 E -1.000 *
510 D -1.000 *
511 E -1.000 *
512 G -1.000 *
513 G -1.000 *
514 E -1.000 *
515 G -1.000 *
516 N -1.000 *
517 Q -1.000 *
518 H -1.000 *
519 A -1.000 *
520 V -1.000 *
521 M -1.000 *
522 V -1.000 *
523 G -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 257.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MLPGSAAPAA GSGMFVPTQT VGTVLCCICG VAMQPNPANM CARCIRARVD ITEGVPRHAA
70 80 90 100 110 120
VVYCPDCTSY LQPPRSWLRA GPESPELMQI LLRRLNRPLA RLRVSLSAAE FVFSEPHSKR
130 140 150 160 170 180
LRLKLRLRRE VFNAVVLEQT HPVEFTVHDR LCDACARAQS NPDQWVAVVQ LRQHVPHRRT
190 200 210 220 230 240
FLYLEQLLLK HGQASLALRV AAAPGGLDFF FGSRSHAARL VDFLATVAPV QTQTAKQLVS
250 260 270 280 290 300
HDTKSNVYNY KHTFSVEICP ICREDLIALS PQVSRDLGGL GPIVLCIKVT NAIALLDPLT
310 320 330 340 350 360
LRVHHLEEKK YRVYNFKAAL TSKQLVEYIV LDIEHESPEI TIDGSRYQLA YAQVARVSDF
370 380 390 400 410 420
GKNDTMFTVR THLGHLLNPG DLALGYDLYG ANLNDDDMDT AMMRHSLPEV ILVKKSFAKR
430 440 450 460 470 480
PRTRRWKLKR LPMEEDAVNK AKGELEKRAD EYEEFLRDLE HNSDIRFQID LYKDEDYRSE
490 500 510 520
MASTIGDDVP TVPIEELIED LSLGDDEEED EGGEGNQHAV MVG
[1]. "Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.
"
Shi Y, Liu X, Li R, Gao Y, Xu Z, Zhang B, Zhou Y. (2014)
Journal of Experimental Botany,
:
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.