NESdb

Heat shock factor protein HSF30 UniProt

Heat shock transcription factor 30 (HSTF 30) Heat stress transcription factor

Solanum peruvianum (Peruvian tomato)

LMB Sensitive ^{Ref.1The balance of nuclear import and export determines the intracellular distribution and function of tomato heat stress transcription factor HsfA2, Heerklotz et al., Mol Cell Biol, 2001}

*highlighted yellow in the full sequence

L344A/L348A/L351A ^{Ref.1The balance of nuclear import and export determines the intracellular distribution and function of tomato heat stress transcription factor HsfA2, Heerklotz et al., Mol Cell Biol, 2001}

Unknown

*shown as underlined residues in the full sequence

³³⁹EELQDLVDQLGFL³⁵¹ ^{Ref.1The balance of nuclear import and export determines the intracellular distribution and function of tomato heat stress transcription factor HsfA2, Heerklotz et al., Mol Cell Biol, 2001}

Unknown

Show FASTA Format

>gi|729774|sp|P41152.1|HSF30_SOLPE RecName: Full=Heat shock factor protein HSF30; AltName: Full=Heat shock transcription factor 30; Short=HSTF 30; AltName: Full=Heat stress transcription factor
MEDVMKVKVEEDGIPTAVLPMEGLHDVGPPPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTL
LPRFFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNVGQSMNQQGSGACIEIG
YYGMEEELERLKRDKNVLMTEIVKLRQQQQSTRNQIIAMGEKIETQERKQVQMMSFLAKIFSNPTFLQQY
LDKQVHRKDKQRIEVGQKRRLTMTPSVTGSDQPMNYSSSLQESEAELASIEMLFSAAMDNESSSNVRPDS
VVTANGTDMEPVADDIWEELLSEDLISGDRAAEEVVVVEQPEFDVEVEDLVVKTPEWGEELQDLVDQLGF
L

Show Domain Info by CDD

Show Secondary Structure by PSIPRED

    	# PSIPRED HFORMAT (PSIPRED V3.2)

Conf: 964344443568999878788998888999730100001258999972321799994898
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCCCCCEEE
  AA: MEDVMKVKVEEDGIPTAVLPMEGLHDVGPPPFLSKTYEMVEDSSTDQVISWSTTRNSFIV
              10        20        30        40        50        60


Conf: 182224543148678899921456641015865448996410343324650100012333
Pred: ECCHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
  AA: WDSHKFSTTLLPRFFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKR
              70        80        90       100       110       120


Conf: 478899998899875201466675478776655577999999998999999999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
  AA: RRNVGQSMNQQGSGACIEIGYYGMEEELERLKRDKNVLMTEIVKLRQQQQSTRNQIIAMG
             130       140       150       160       170       180


Conf: 768999999999999999983394378878899987432110002355677789998899
Pred: HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
  AA: EKIETQERKQVQMMSFLAKIFSNPTFLQQYLDKQVHRKDKQRIEVGQKRRLTMTPSVTGS
             190       200       210       220       230       240


Conf: 998877987146689887675421013587677899998644689999998855577874
Pred: CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
  AA: DQPMNYSSSLQESEAELASIEMLFSAAMDNESSSNVRPDSVVTANGTDMEPVADDIWEEL
             250       260       270       280       290       300


Conf: 118788988322111126898765322212369996023088988840899
Pred: HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
  AA: LSEDLISGDRAAEEVVVVEQPEFDVEVEDLVVKTPEWGEELQDLVDQLGFL
             310       320       330       340       350

Show Conservation Score by AL2CO

1     M      -1.000    *
2     E      -1.000    *
3     D      -1.000    *
4     V      -1.000    *
5     M      -1.000    *
6     K      -1.000    *
7     V      -1.000    *
8     K      -1.000    *
9     V      -1.000    *
10    E      -1.000    *
11    E      -1.000    *
12    D      -1.000    *
13    G      -1.000    *
14    I      -1.000    *
15    P      -1.000    *
16    T      -1.000    *
17    A      -1.000    *
18    V      -1.000    *
19    L      -1.000    *
20    P       1.188
21    M      -0.509
22    E      -0.357
23    G      -0.592
24    L      -0.418
25    H      -0.427
26    D      -0.323
27    V      -0.464
28    G      -0.380
29    P       0.729
30    P       1.039
31    P       1.723
32    F       3.042
33    L       1.395
34    S      -0.414
35    K       3.042
36    T       0.812
37    Y       1.653
38    E       0.050
39    M       0.811
40    V       2.524
41    E       0.552
42    D       1.477
43    S      -0.387
44    S      -0.636
45    T       0.724
46    D       0.871
47    Q      -0.616
48    V       0.772
49    I       1.319
50    S       0.371
51    W       3.042
52    S       0.906
53    T      -0.750
54    T      -0.281
55    R      -0.174
56    N      -0.613
57    S       1.167
58    F       2.437
59    I       0.662
60    V       1.522
61    W      -0.377
62    D       0.726
63    S      -0.486
64    H      -0.744
65    K      -0.508
66    F       2.022
67    S       0.541
68    T      -0.601
69    T      -0.676
70    L       0.557
71    L       3.042
72    P       1.683
73    R      -0.252
74    F       0.346
75    F       1.993
76    K       2.238
77    H       2.682
78    S       0.167
79    N       1.987
80    F       1.534
81    S       0.963
82    S       2.212
83    F       3.042
84    I       1.292
85    R       2.390
86    Q       2.699
87    L       2.395
88    N       1.643
89    T       0.611
90    Y       2.189
91    G       1.452
92    F       2.059
93    R       1.560
94    K       2.187
95    V       0.304
96    D       0.392
97    P       0.130
98    D       1.182
99    R      -0.072
100   W       1.063
101   E       1.172
102   F       2.138
103   A       0.488
104   N       1.387
105   E       0.127
106   G      -0.470
107   F       3.042
108   L       0.070
109   G       0.216
110   G       1.277
111   Q       0.378
112   K       0.424
113   H       0.003
114   L       1.110
115   L       2.467
116   K      -0.222
117   T      -0.290
118   I       2.127
119   K      -0.439
120   R       1.986
121   R       1.303
122   R       0.149
123   N      -0.231
124   V      -0.645
125   G      -0.463
126   Q      -0.758
127   S      -0.681
128   M      -0.769
129   N      -0.783
130   Q      -0.688
131   Q      -0.544
132   G      -0.626
133   S      -0.869
134   G      -0.874
135   A      -0.752
136   C      -0.792
137   I      -0.597
138   E      -0.413
139   I      -0.743
140   G      -0.639
141   Y      -0.798
142   Y      -0.782
143   G      -0.401
144   M      -0.666
145   E      -0.566
146   E      -0.597
147   E       0.111
148   L       0.234
149   E      -0.324
150   R      -0.648
151   L       0.278
152   K      -0.239
153   R      -0.464
154   D       0.090
155   K      -0.004
156   N      -0.498
157   V      -0.639
158   L       0.803
159   M      -0.638
160   T      -0.388
161   E       0.473
162   I       0.599
163   V      -0.633
164   K      -0.232
165   L      -0.160
166   R       0.144
167   Q       0.001
168   Q      -0.055
169   Q       0.161
170   Q      -0.527
171   S      -0.730
172   T      -0.317
173   R      -0.613
174   N      -0.893
175   Q      -0.317
176   I       0.324
177   I      -0.616
178   A      -0.646
179   M       0.591
180   G      -0.621
181   E      -0.298
182   K       0.381
183   I       0.575
184   E      -0.709
185   T      -0.779
186   Q      -0.041
187   E       0.963
188   R      -0.643
189   K      -0.140
190   Q       0.246
191   V      -0.652
192   Q      -0.134
193   M       0.475
194   M       0.004
195   S      -0.644
196   F       0.229
197   L       0.752
198   A      -0.524
199   K      -0.263
200   I       0.150
201   F      -0.008
202   S      -0.172
203   N      -0.147
204   P       0.484
205   T      -0.599
206   F      -0.196
207   L      -0.275
208   Q      -0.645
209   Q      -0.527
210   Y      -0.102
211   L      -0.536
212   D      -0.652
213   K      -0.490
214   Q      -0.728
215   V      -0.614
216   H      -0.804
217   R      -0.698
218   K      -0.663
219   D      -0.721
220   K      -0.757
221   Q      -0.761
222   R      -0.805
223   I      -0.853
224   E      -0.772
225   V      -0.796
226   G      -0.740
227   Q      -0.474
228   K      -0.148
229   R      -0.276
230   R      -0.397
231   L      -0.576
232   T      -0.736
233   M      -0.814
234   T      -0.831
235   P      -0.717
236   S      -0.739
237   V      -0.839
238   T      -0.768
239   G      -0.844
240   S      -0.785
241   D      -0.697
242   Q      -0.810
243   P      -0.723
244   M      -0.800
245   N      -0.842
246   Y      -0.845
247   S      -0.902
248   S      -0.829
249   S      -0.777
250   L      -0.875
251   Q      -0.826
252   E      -0.799
253   S      -0.863
254   E      -0.795
255   A      -0.876
256   E      -0.770
257   L      -0.844
258   A      -0.884
259   S      -0.686
260   I      -0.754
261   E      -0.734
262   M      -0.861
263   L      -0.866
264   F      -0.842
265   S      -0.894
266   A      -0.733
267   A      -0.755
268   M      -0.899
269   D      -0.741
270   N      -0.887
271   E      -0.759
272   S      -0.791
273   S      -0.899
274   S      -0.846
275   N      -0.823
276   V      -0.828
277   R      -0.848
278   P      -0.647
279   D      -0.825
280   S      -0.840
281   V      -0.864
282   V      -0.832
283   T      -0.784
284   A      -0.815
285   N      -0.696
286   G      -0.647
287   T      -0.808
288   D      -0.579
289   M      -0.761
290   E      -0.681
291   P      -0.787
292   V      -0.545
293   A      -0.813
294   D      -0.606
295   D      -0.614
296   I      -0.278
297   W      -0.339
298   E      -0.438
299   E      -0.375
300   L      -0.067
301   L      -0.015
302   S      -1.000    *
303   E      -1.000    *
304   D      -1.000    *
305   L      -1.000    *
306   I      -1.000    *
307   S      -1.000    *
308   G      -1.000    *
309   D      -1.000    *
310   R      -1.000    *
311   A      -1.000    *
312   A      -1.000    *
313   E      -1.000    *
314   E      -1.000    *
315   V      -1.000    *
316   V      -1.000    *
317   V      -1.000    *
318   V      -1.000    *
319   E      -1.000    *
320   Q      -1.000    *
321   P      -1.000    *
322   E      -1.000    *
323   F      -1.000    *
324   D      -1.000    *
325   V      -1.000    *
326   E      -1.000    *
327   V      -1.000    *
328   E      -1.000    *
329   D      -1.000    *
330   L      -1.000    *
331   V      -1.000    *
332   V      -1.000    *
333   K      -1.000    *
334   T      -1.000    *
335   P      -1.000    *
336   E      -1.000    *
337   W      -1.000    *
338   G      -1.000    *
339   E      -1.000    *
340   E      -1.000    *
341   L      -1.000    *
342   Q      -1.000    *
343   D      -1.000    *
344   L      -1.000    *
345   V      -1.000    *
346   D      -1.000    *
347   Q      -1.000    *
348   L      -1.000    *
349   G      -1.000    *
350   F      -1.000    *
351   L      -1.000    *
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - 26.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50

        10         20         30         40         50         60 MEDVMKVKVE EDGIPTAVLP MEGLHDVGPP PFLSKTYEMV EDSSTDQVIS WSTTRNSFIV 
        70         80         90        100        110        120 WDSHKFSTTL LPRFFKHSNF SSFIRQLNTY GFRKVDPDRW EFANEGFLGG QKHLLKTIKR 
       130        140        150        160        170        180 RRNVGQSMNQ QGSGACIEIG YYGMEEELER LKRDKNVLMT EIVKLRQQQQ STRNQIIAMG 
       190        200        210        220        230        240 EKIETQERKQ VQMMSFLAKI FSNPTFLQQY LDKQVHRKDK QRIEVGQKRR LTMTPSVTGS 
       250        260        270        280        290        300 DQPMNYSSSL QESEAELASI EMLFSAAMDN ESSSNVRPDS VVTANGTDME PVADDIWEEL 
       310        320        330        340        350            
LSEDLISGDR AAEEVVVVEQ PEFDVEVEDL VVKTPEWGEE LQDLVDQLGF L

Not Available

Tomato HsfA2 is a strong heat stress-inducible protein. It is localized in the cytoplasm in spite of the presence of a functional NLS. Heerklotz et al. showed that this is due to the presence of a strong NES at the C-terminal (aa 339-351). When coexpressed with HsfA1, both proteins become nuclear. However, the molecular basis for this effect is not clear.

[1]. "The balance of nuclear import and export determines the intracellular distribution and function of tomato heat stress transcription factor HsfA2"
Heerklotz, D., Döring P., Bonzelius, F., Winkelhaus, S., Nover, L. (2001) Mol Cell Biol, 21:1759-1768 PubMed

Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus. Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.

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