NESdb

Zinc finger protein 36 C3H type-like 3 UniProt

None

Peromyscus maniculatus

LMB Sensitive ^{Ref.1Emergence and evolution of Zfp36l3, Gingerich et al., Mol Phylogenet Evol, 2015}

*highlighted yellow in the full sequence

²⁹⁸DMLISSL³⁰⁴ by Deletion ^{Ref.1Emergence and evolution of Zfp36l3, Gingerich et al., Mol Phylogenet Evol, 2015}

Unknown

*shown as underlined residues in the full sequence

Unknown

Show FASTA Format

>tr|A0A0S1FMM8|A0A0S1FMM8_PERMA Zinc finger protein 36 C3H type-like 3 OS=Peromyscus maniculatus OX=10042 GN=Zfp36l3 PE=2 SV=1
MTTLLWTFYSMDLMRRNQMSLPGYCLNGALHANGAPSSSSFMPGFIPPPSSSNPQMFQHL
PPRAFSSSPNFPTGTNSRRRNGQLGATGTALREPSGAYAVRQFHPANRQHSLQQRLPPQQ
KASSSSSTVTSERYKTELCRPFEESGTCRYGHKCQFAHGSRELRTLSRHPKYKTEPCRTF
HSSGFCPYGTRCHFIHNGSGRQIVPSESPSESSSGEPCSADDFNRESEPGSQTPEPGPQT
PEPGSQTVSSVNSSGLPSGQDQPLEAPPLLNYQKLSSGPVPHLGPQPPDAQSETLEIDML
ISSLDSLLGTNSFDSLLSYSSSSSLSGSAAPRTNPSRRLPIFSRLSDSDK

Show Domain Info by CDD

Show Secondary Structure by PSIPRED

    	# PSIPRED HFORMAT (PSIPRED V3.2)

Conf: 930010034555543278898788998877887789989989887899999995443479
Pred: CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
  AA: MTTLLWTFYSMDLMRRNQMSLPGYCLNGALHANGAPSSSSFMPGFIPPPSSSNPQMFQHL
              10        20        30        40        50        60


Conf: 999888999999998877569988997656789999874455687877565466699775
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
  AA: PPRAFSSSPNFPTGTNSRRRNGQLGATGTALREPSGAYAVRQFHPANRQHSLQQRLPPQQ
              70        80        90       100       110       120


Conf: 689999877855311013457544645778986543436021206889999887554002
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
  AA: KASSSSSTVTSERYKTELCRPFEESGTCRYGHKCQFAHGSRELRTLSRHPKYKTEPCRTF
             130       140       150       160       170       180


Conf: 223567899963001479887789999999998999999899999999999999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
  AA: HSSGFCPYGTRCHFIHNGSGRQIVPSESPSESSSGEPCSADDFNRESEPGSQTPEPGPQT
             190       200       210       220       230       240


Conf: 999998878999999999999999999988888998999999999999999999534655
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
  AA: PEPGSQTVSSVNSSGLPSGQDQPLEAPPLLNYQKLSSGPVPHLGPQPPDAQSETLEIDML
             250       260       270       280       290       300


Conf: 88899879999999889989999999999999999986658556756899
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
  AA: ISSLDSLLGTNSFDSLLSYSSSSSLSGSAAPRTNPSRRLPIFSRLSDSDK
             310       320       330       340       350

Show Conservation Score by AL2CO

1     M      -1.000    *
2     T      -1.000    *
3     T      -1.000    *
4     L      -1.000    *
5     L      -1.000    *
6     W      -1.000    *
7     T      -1.000    *
8     F      -1.000    *
9     Y      -1.000    *
10    S      -1.000    *
11    M      -1.000    *
12    D      -1.000    *
13    L      -1.000    *
14    M      -1.000    *
15    R      -1.000    *
16    R      -1.000    *
17    N      -1.000    *
18    Q      -1.000    *
19    M      -1.000    *
20    S      -1.000    *
21    L      -1.000    *
22    P      -1.000    *
23    G      -1.000    *
24    Y      -1.000    *
25    C      -1.000    *
26    L      -1.000    *
27    N      -1.000    *
28    G      -1.000    *
29    A      -1.000    *
30    L      -1.000    *
31    H      -1.000    *
32    A      -1.000    *
33    N      -1.000    *
34    G      -1.000    *
35    A      -1.000    *
36    P      -1.000    *
37    S      -1.000    *
38    S      -1.000    *
39    S      -1.000    *
40    S      -1.000    *
41    F      -1.000    *
42    M      -1.000    *
43    P      -1.000    *
44    G      -1.000    *
45    F      -1.000    *
46    I      -1.000    *
47    P      -1.000    *
48    P      -1.000    *
49    P      -1.000    *
50    S      -1.000    *
51    S      -1.000    *
52    S      -1.000    *
53    N      -1.000    *
54    P      -1.000    *
55    Q      -1.000    *
56    M      -1.000    *
57    F      -1.000    *
58    Q      -1.000    *
59    H      -1.000    *
60    L      -1.000    *
61    P      -1.000    *
62    P      -1.000    *
63    R      -1.000    *
64    A      -1.000    *
65    F      -1.000    *
66    S      -0.568
67    S      -0.525
68    S      -0.461
69    P      -0.221
70    N      -0.381
71    F      -0.575
72    P      -0.528
73    T      -0.518
74    G      -0.492
75    T      -0.402
76    N      -0.567
77    S      -0.618
78    R      -0.669
79    R      -0.645
80    R      -0.609
81    N      -0.463
82    G      -0.460
83    Q      -0.583
84    L      -0.517
85    G      -0.480
86    A      -0.450
87    T      -0.557
88    G      -0.407
89    T      -0.484
90    A      -0.410
91    L      -0.409
92    R      -0.584
93    E      -0.516
94    P      -0.449
95    S      -0.442
96    G      -0.519
97    A      -0.561
98    Y      -0.653
99    A      -0.544
100   V      -0.603
101   R      -0.466
102   Q      -0.308
103   F      -0.497
104   H      -0.476
105   P      -0.467
106   A      -0.545
107   N      -0.244
108   R      -0.532
109   Q      -0.511
110   H      -0.617
111   S      -0.431
112   L      -0.533
113   Q      -0.457
114   Q      -0.465
115   R      -0.414
116   L      -0.473
117   P      -0.436
118   P      -0.415
119   Q      -0.237
120   Q      -0.406
121   K      -0.388
122   A      -0.441
123   S      -0.420
124   S      -0.445
125   S      -0.288
126   S      -0.425
127   S      -0.346
128   T      -0.498
129   V      -0.406
130   T      -0.418
131   S      -0.078
132   E      -0.295
133   R       0.521
134   Y       1.503
135   K       3.257
136   T       2.401
137   E       1.165
138   L       1.339
139   C       3.906
140   R      -0.073
141   P       0.222
142   F       1.382
143   E      -0.085
144   E       0.253
145   S      -0.302
146   G       0.724
147   T      -0.446
148   C       3.906
149   R       0.674
150   Y       1.256
151   G       1.323
152   H      -0.200
153   K       0.974
154   C       3.906
155   Q       0.642
156   F       2.631
157   A       2.075
158   H       3.906
159   G       1.574
160   S      -0.510
161   R      -0.260
162   E       1.862
163   L       0.777
164   R       1.280
165   T      -0.447
166   L       0.129
167   S      -0.415
168   R       0.340
169   H       0.462
170   P       0.247
171   K       0.604
172   Y       1.087
173   K       2.497
174   T       1.730
175   E       0.896
176   P       0.249
177   C       3.195
178   R       0.075
179   T       0.121
180   F       1.361
181   H      -0.085
182   S      -0.263
183   S      -0.379
184   G       1.197
185   F      -0.323
186   C       3.541
187   P       0.872
188   Y       2.028
189   G       1.924
190   T      -0.210
191   R       1.635
192   C       3.906
193   H       0.364
194   F       2.492
195   I       0.780
196   H       3.047
197   N      -0.023
198   G      -0.380
199   S      -0.243
200   G      -0.051
201   R      -0.440
202   Q      -0.583
203   I      -0.515
204   V      -0.428
205   P      -0.426
206   S      -0.521
207   E      -0.500
208   S      -0.418
209   P      -0.443
210   S      -0.621
211   E      -0.535
212   S      -0.382
213   S      -0.562
214   S      -0.532
215   G      -0.581
216   E      -0.511
217   P      -0.489
218   C      -0.552
219   S      -0.488
220   A      -0.559
221   D      -0.494
222   D      -0.491
223   F      -0.586
224   N      -0.340
225   R      -0.557
226   E      -0.566
227   S      -0.510
228   E      -0.562
229   P      -0.470
230   G      -0.533
231   S      -0.492
232   Q      -0.552
233   T      -0.561
234   P      -0.483
235   E      -0.425
236   P      -0.376
237   G      -0.462
238   P      -0.532
239   Q      -0.628
240   T      -0.534
241   P      -0.539
242   E      -0.525
243   P      -0.388
244   G      -0.490
245   S      -0.512
246   Q      -0.417
247   T      -0.448
248   V      -0.570
249   S      -0.555
250   S      -0.582
251   V      -0.555
252   N      -0.475
253   S      -0.478
254   S      -0.427
255   G      -0.363
256   L      -0.547
257   P      -0.440
258   S      -0.388
259   G      -0.578
260   Q      -0.504
261   D      -0.306
262   Q      -0.603
263   P      -0.360
264   L      -0.486
265   E      -0.521
266   A      -0.361
267   P      -0.406
268   P      -0.569
269   L      -0.515
270   L      -0.563
271   N      -0.419
272   Y      -0.526
273   Q      -0.501
274   K      -0.493
275   L      -0.511
276   S      -0.500
277   S      -0.582
278   G      -0.584
279   P      -0.469
280   V      -0.558
281   P      -0.430
282   H      -0.539
283   L      -0.608
284   G      -0.493
285   P      -0.649
286   Q      -0.521
287   P      -0.545
288   P      -0.285
289   D      -0.612
290   A      -0.453
291   Q      -0.605
292   S      -0.599
293   E      -0.531
294   T      -0.603
295   L      -0.498
296   E      -0.515
297   I      -0.526
298   D      -0.440
299   M      -0.452
300   L      -0.506
301   I      -0.487
302   S      -0.272
303   S      -0.201
304   L      -0.559
305   D      -0.363
306   S      -0.513
307   L      -0.431
308   L      -0.588
309   G      -0.508
310   T      -0.352
311   N      -0.534
312   S      -0.494
313   F      -0.549
314   D      -0.229
315   S      -0.476
316   L      -0.511
317   L      -0.328
318   S      -0.367
319   Y      -0.162
320   S      -0.369
321   S      -0.202
322   S      -0.173
323   S      -0.391
324   S      -0.349
325   L      -0.393
326   S      -0.237
327   G      -0.149
328   S      -0.391
329   A      -0.270
330   A       0.120
331   P       0.014
332   R      -0.223
333   T      -0.329
334   N       0.162
335   P       0.024
336   S       0.231
337   R       0.742
338   R       3.026
339   L       2.538
340   P       1.247
341   I       2.587
342   F       2.018
343   S       0.915
344   R       1.066
345   L       2.218
346   S       2.455
347   D      -1.000    *
348   S      -1.000    *
349   D      -1.000    *
350   K      -1.000    *
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - 294.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50

        10         20         30         40         50         60 
MTTLLWTFYS MDLMRRNQMS LPGYCLNGAL HANGAPSSSS FMPGFIPPPS SSNPQMFQHL 
        70         80         90        100        110        120 
PPRAFSSSPN FPTGTNSRRR NGQLGATGTA LREPSGAYAV RQFHPANRQH SLQQRLPPQQ 
       130        140        150        160        170        180 
KASSSSSTVT SERYKTELCR PFEESGTCRY GHKCQFAHGS RELRTLSRHP KYKTEPCRTF 
       190        200        210        220        230        240 
HSSGFCPYGT RCHFIHNGSG RQIVPSESPS ESSSGEPCSA DDFNRESEPG SQTPEPGPQT 
       250        260        270        280        290        300 
PEPGSQTVSS VNSSGLPSGQ DQPLEAPPLL NYQKLSSGPV PHLGPQPPDA QSETLEIDML 
       310        320        330        340        350            ISSLDSLLGT NSFDSLLSYS SSSSLSGSAA PRTNPSRRLP IFSRLSDSDK

Not Available

Zfp36l3 belongs to TTP family of small RNA binding proteins. Gingerich et al. found that both tagged and untagged Zfp36l3 from Peromyscus maniculatus are LMB-sensitive. This behavior is not conserved in mouse Zfp36l3. Putative NES was identified in residue 300-309 which matches partially a traditional NES consensus. Upon inspection, it is possible that this is a class 3 NES or a reverse NES.

[1]. "Emergence and evolution of Zfp36l3"
Gingerich TJ, Stumpo DJ, Lai WS, Randall TA, Steppan SJ, Blackshear PJ. (2015) Mol Phylogenet Evol, 94(Pt B):518-530 PubMed

Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus. Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.

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