SRY-box transcription factor SOX14B
UniProt
Show FASTA Format
>tr|A0A1W5HLB9|A0A1W5HLB9_ERISI SOX14B OS=Eriocheir sinensis OX=95602 GN=Sox14b PE=2 SV=1
MLPNAVYERVPLPSTHTTVFGSLLVNDNSNTPYSDATQTKKHPPNHIKRPMNAFMVWSQM
ERREIIKFAPDMHNAEISKQLGRRWKMLTEEQRRPYREEAERLKQLHNREYPSYKYRPRK
KGQKAQLKGVSEKGGGKVVKAKDHNSGKDRIKNVVNVTSNTHITHTQGLDVDHNKLGIKI
TIDDDFKRTHRMPQSRIMTLTPHSPPEVPASPPCELPDSPESASMYEDQPAFNYSPSVTG
LYHSTSASTATNTPPSFSLLSHTASGPVTVTSPSIIKQEPEDPLYEAVYTPQSLASPGLS
SPNSEFSTPTHIKTEIKTDCHSPNELQTEHATLDDLYNITDFIPISDMKVDLESIDPDID
LDAVSTSSGSHFDFSSVADDTDPLLCDTWICGRNFLP
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 988534567789999876445412379999989898877889999988987223434388
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AA: MLPNAVYERVPLPSTHTTVFGSLLVNDNSNTPYSDATQTKKHPPNHIKRPMNAFMVWSQM
10 20 30 40 50 60
Conf: 988977539997138988988555203770007752999999999854219999877887
Pred: HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
AA: ERREIIKFAPDMHNAEISKQLGRRWKMLTEEQRRPYREEAERLKQLHNREYPSYKYRPRK
70 80 90 100 110 120
Conf: 786643478877899974467789999877564443477776445688877888874200
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: KGQKAQLKGVSEKGGGKVVKAKDHNSGKDRIKNVVNVTSNTHITHTQGLDVDHNKLGIKI
130 140 150 160 170 180
Conf: 236755335799966558889999997689999999999875654457888899999767
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: TIDDDFKRTHRMPQSRIMTLTPHSPPEVPASPPCELPDSPESASMYEDQPAFNYSPSVTG
190 200 210 220 230 240
Conf: 422357889999999866468888898543689865569999875555688889999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: LYHSTSASTATNTPPSFSLLSHTASGPVTVTSPSIIKQEPEDPLYEAVYTPQSLASPGLS
250 260 270 280 290 300
Conf: 999999999887644445789988544568882121266898887775788787898877
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: SPNSEFSTPTHIKTEIKTDCHSPNELQTEHATLDDLYNITDFIPISDMKVDLESIDPDID
310 320 330 340 350 360
Conf: 6667799989764589978731101585533478789
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: LDAVSTSSGSHFDFSSVADDTDPLLCDTWICGRNFLP
370 380 390
Show Conservation Score by AL2CO
1 M -1.000 *
2 L -1.000 *
3 P -1.000 *
4 N -1.000 *
5 A -1.000 *
6 V -1.000 *
7 Y -1.000 *
8 E -1.000 *
9 R -1.000 *
10 V -1.000 *
11 P -1.000 *
12 L -1.000 *
13 P -1.000 *
14 S -1.000 *
15 T -1.000 *
16 H -1.000 *
17 T -1.000 *
18 T -1.000 *
19 V -1.000 *
20 F -1.000 *
21 G -1.000 *
22 S -1.000 *
23 L -1.000 *
24 L -1.000 *
25 V -1.000 *
26 N -1.000 *
27 D -1.000 *
28 N -0.464
29 S 0.060
30 N -0.337
31 T -0.257
32 P -0.140
33 Y -0.502
34 S -0.153
35 D -0.507
36 A -0.313
37 T -0.315
38 Q -0.358
39 T -0.330
40 K -0.053
41 K -0.325
42 H -0.283
43 P -0.171
44 P -0.034
45 N 0.278
46 H 1.401
47 I 2.178
48 K 1.847
49 R 3.046
50 P 3.046
51 M 2.335
52 N 3.046
53 A 1.961
54 F 3.046
55 M 2.259
56 V 2.335
57 W 2.335
58 S 1.766
59 Q 1.419
60 M -0.028
61 E 0.861
62 R 2.081
63 R 1.934
64 E 0.703
65 I 1.005
66 I 0.218
67 K 0.308
68 F -0.038
69 A 0.050
70 P 2.182
71 D 0.981
72 M 1.089
73 H 1.697
74 N 2.478
75 A 1.591
76 E 1.512
77 I 1.982
78 S 3.046
79 K 2.345
80 Q 0.112
81 L 2.081
82 G 3.046
83 R 0.035
84 R -0.079
85 W 2.576
86 K 1.499
87 M -0.167
88 L 2.278
89 T -0.069
90 E 0.078
91 E -0.393
92 Q 1.142
93 R 1.573
94 R 0.306
95 P 1.564
96 Y 1.743
97 R 0.493
98 E 0.185
99 E 1.471
100 A 1.858
101 E 0.735
102 R 0.806
103 L 2.335
104 K 1.351
105 Q 0.132
106 L 0.019
107 H 3.046
108 N 0.390
109 R 0.144
110 E 0.527
111 Y 1.768
112 P 3.046
113 S 0.810
114 Y 3.046
115 K 1.431
116 Y 1.818
117 R 1.137
118 P 1.417
119 R 0.657
120 K 0.796
121 K 0.941
122 G -0.074
123 Q -0.173
124 K -0.304
125 A -0.387
126 Q -0.482
127 L -0.400
128 K -0.354
129 G -0.311
130 V -0.547
131 S -0.462
132 E -0.535
133 K -0.491
134 G -0.468
135 G -0.502
136 G -0.501
137 K -0.496
138 V -0.579
139 V -0.544
140 K -0.483
141 A -0.468
142 K -0.536
143 D -0.492
144 H -0.541
145 N -0.545
146 S -0.551
147 G -0.533
148 K -0.554
149 D -0.476
150 R -0.630
151 I -0.628
152 K -0.652
153 N -0.518
154 V -0.643
155 V -0.610
156 N -0.661
157 V -0.620
158 T -0.594
159 S -0.506
160 N -0.531
161 T -0.571
162 H -0.608
163 I -0.605
164 T -0.625
165 H -0.529
166 T -0.599
167 Q -0.508
168 G -0.613
169 L -0.648
170 D -0.458
171 V -0.644
172 D -0.579
173 H -0.613
174 N -0.511
175 K -0.563
176 L -0.617
177 G -0.485
178 I -0.589
179 K -0.533
180 I -0.671
181 T -0.605
182 I -0.598
183 D -0.593
184 D -0.535
185 D -0.552
186 F -0.611
187 K -0.578
188 R -0.556
189 T -0.603
190 H -0.639
191 R -0.585
192 M -0.634
193 P -0.525
194 Q -0.526
195 S -0.603
196 R -0.538
197 I -0.584
198 M -0.684
199 T -0.589
200 L -0.593
201 T -0.565
202 P -0.557
203 H -0.584
204 S -0.525
205 P -0.461
206 P -0.550
207 E -0.487
208 V -0.504
209 P -0.332
210 A -0.449
211 S -0.446
212 P -0.467
213 P -0.543
214 C -0.668
215 E -0.557
216 L -0.586
217 P -0.331
218 D -0.493
219 S -0.503
220 P -0.453
221 E -0.442
222 S -0.485
223 A -0.519
224 S -0.552
225 M -0.474
226 Y -0.462
227 E -0.349
228 D -0.449
229 Q -0.587
230 P -0.602
231 A -0.580
232 F -0.501
233 N -0.610
234 Y -0.614
235 S -0.591
236 P -0.551
237 S -0.597
238 V -0.625
239 T -0.577
240 G -0.573
241 L -0.639
242 Y -0.558
243 H -0.657
244 S -0.607
245 T -0.630
246 S -0.545
247 A -0.629
248 S -0.616
249 T -0.578
250 A -0.587
251 T -0.618
252 N -0.563
253 T -0.621
254 P -0.547
255 P -0.533
256 S -0.600
257 F -0.596
258 S -0.498
259 L -0.564
260 L -0.639
261 S -0.601
262 H -0.580
263 T -0.562
264 A -0.612
265 S -0.620
266 G -0.623
267 P -0.562
268 V -0.606
269 T -0.626
270 V -0.581
271 T -0.562
272 S -0.619
273 P -0.637
274 S -0.623
275 I -0.604
276 I -0.613
277 K -0.545
278 Q -0.554
279 E -0.544
280 P -0.494
281 E -0.507
282 D -0.516
283 P -0.554
284 L -0.529
285 Y -0.531
286 E -0.552
287 A -0.481
288 V -0.555
289 Y -0.416
290 T -0.537
291 P -0.495
292 Q -0.527
293 S -0.467
294 L -0.663
295 A -0.525
296 S -0.554
297 P -0.498
298 G -0.429
299 L -0.632
300 S -0.543
301 S -0.419
302 P -0.550
303 N -0.514
304 S -0.484
305 E -0.601
306 F -0.400
307 S -0.487
308 T -0.453
309 P -1.000 *
310 T -1.000 *
311 H -1.000 *
312 I -1.000 *
313 K -1.000 *
314 T -1.000 *
315 E -1.000 *
316 I -1.000 *
317 K -1.000 *
318 T -1.000 *
319 D -1.000 *
320 C -1.000 *
321 H -1.000 *
322 S -1.000 *
323 P -1.000 *
324 N -1.000 *
325 E -1.000 *
326 L -1.000 *
327 Q -1.000 *
328 T -1.000 *
329 E -1.000 *
330 H -1.000 *
331 A -1.000 *
332 T -1.000 *
333 L -1.000 *
334 D -1.000 *
335 D -1.000 *
336 L -1.000 *
337 Y -1.000 *
338 N -1.000 *
339 I -1.000 *
340 T -1.000 *
341 D -1.000 *
342 F -1.000 *
343 I -1.000 *
344 P -1.000 *
345 I -1.000 *
346 S -1.000 *
347 D -1.000 *
348 M -1.000 *
349 K -1.000 *
350 V -1.000 *
351 D -1.000 *
352 L -1.000 *
353 E -1.000 *
354 S -1.000 *
355 I -1.000 *
356 D -1.000 *
357 P -1.000 *
358 D -1.000 *
359 I -1.000 *
360 D -1.000 *
361 L -1.000 *
362 D -1.000 *
363 A -1.000 *
364 V -1.000 *
365 S -1.000 *
366 T -1.000 *
367 S -1.000 *
368 S -1.000 *
369 G -1.000 *
370 S -1.000 *
371 H -1.000 *
372 F -1.000 *
373 D -1.000 *
374 F -1.000 *
375 S -1.000 *
376 S -1.000 *
377 V -1.000 *
378 A -1.000 *
379 D -1.000 *
380 D -1.000 *
381 T -1.000 *
382 D -1.000 *
383 P -1.000 *
384 L -1.000 *
385 L -1.000 *
386 C -1.000 *
387 D -1.000 *
388 T -1.000 *
389 W -1.000 *
390 I -1.000 *
391 C -1.000 *
392 G -1.000 *
393 R -1.000 *
394 N -1.000 *
395 F -1.000 *
396 L -1.000 *
397 P -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 307.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MLPNAVYERV PLPSTHTTVF GSLLVNDNSN TPYSDATQTK KHPPNHIKRP MNAFMVWSQM
70 80 90 100 110 120
ERREIIKFAP DMHNAEISKQ LGRRWKMLTE EQRRPYREEA ERLKQLHNRE YPSYKYRPRK
130 140 150 160 170 180
KGQKAQLKGV SEKGGGKVVK AKDHNSGKDR IKNVVNVTSN THITHTQGLD VDHNKLGIKI
190 200 210 220 230 240
TIDDDFKRTH RMPQSRIMTL TPHSPPEVPA SPPCELPDSP ESASMYEDQP AFNYSPSVTG
250 260 270 280 290 300
LYHSTSASTA TNTPPSFSLL SHTASGPVTV TSPSIIKQEP EDPLYEAVYT PQSLASPGLS
310 320 330 340 350 360
SPNSEFSTPT HIKTEIKTDC HSPNELQTEH ATLDDLYNIT DFIPISDMKV DLESIDPDID
370 380 390
LDAVSTSSGS HFDFSSVADD TDPLLCDTWI CGRNFLP
SOX proteins are a family of transcription factors related to the testis-determining factor SRY. SOX proteins are characterized by a highly conserved DNA binding high mobility group (HMG) DNA binding domain, which includes two NLSs. By homology to SOX9 (#129) and SOX10 (#60), She and Yang identified putative NESs in SOX14a/SOX14b HMG box. LMB inhibition and leucine mutation only caused moderate nuclear accumulation in putative NES peptide fused to GFP. Authors also note that the putative NES does not match a traditional NES consensus and lacks phi3, however, upon inspection of the sequence, there is a Trp positioned in place to possibly act as phi3 even though it is a more unfavorable residue.
[1]. "Nucleocytoplasmic Shuttling of SOX14A and SOX14B Transcription Factors"
She ZY, Yang WX. (2017)
Oncotarget,
8(29):46955-46968
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.