Show FASTA Format
>sp|P06492|VP16_HHV11 Tegument protein VP16 OS=Human herpesvirus 1 (strain 17) OX=10299 GN=UL48 PE=1 SV=1
MDLLVDELFADMNADGASPPPPRPAGGPKNTPAAPPLYATGRLSQAQLMPSPPMPVPPAA
LFNRLLDDLGFSAGPALCTMLDTWNEDLFSALPTNADLYRECKFLSTLPSDVVEWGDAYV
PERTQIDIRAHGDVAFPTLPATRDGLGLYYEALSRFFHAELRAREESYRTVLANFCSALY
RYLRASVRQLHRQAHMRGRDRDLGEMLRATIADRYYRETARLARVLFLHLYLFLTREILW
AAYAEQMMRPDLFDCLCCDLESWRQLAGLFQPFMFVNGALTVRGVPIEARRLRELNHIRE
HLNLPLVRSAATEEPGAPLTTPPTLHGNQARASGYFMVLIRAKLDSYSSFTTSPSEAVMR
EHAYSRARTKNNYGSTIEGLLDLPDDDAPEEAGLAAPRLSFLPAGHTRRLSTAPPTDVSL
GDELHLDGEDVAMAHADALDDFDLDMLGDGDSPGPGFTPHDSAPYGALDMADFEFEQMFT
DALGIDEYGG
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 912589999700279999999999999999999999877653322345999999999599
Pred: CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
AA: MDLLVDELFADMNADGASPPPPRPAGGPKNTPAAPPLYATGRLSQAQLMPSPPMPVPPAA
10 20 30 40 50 60
Conf: 999997651999725688888864321003689880000002334689367874033568
Pred: HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHCCCCCC
AA: LFNRLLDDLGFSAGPALCTMLDTWNEDLFSALPTNADLYRECKFLSTLPSDVVEWGDAYV
70 80 90 100 110 120
Conf: 866632212238888999999978878899999999999998547989999999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: PERTQIDIRAHGDVAFPTLPATRDGLGLYYEALSRFFHAELRAREESYRTVLANFCSALY
130 140 150 160 170 180
Conf: 999999976867542058973799999999999987999999999999999999899999
Pred: HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: RYLRASVRQLHRQAHMRGRDRDLGEMLRATIADRYYRETARLARVLFLHLYLFLTREILW
190 200 210 220 230 240
Conf: 999977205363000001343433101134300011552456182266566766556665
Pred: HHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCHHHHHHHHHHHH
AA: AAYAEQMMRPDLFDCLCCDLESWRQLAGLFQPFMFVNGALTVRGVPIEARRLRELNHIRE
250 260 270 280 290 300
Conf: 308411223014589999878998666543214599999999741145788998711111
Pred: HCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
AA: HLNLPLVRSAATEEPGAPLTTPPTLHGNQARASGYFMVLIRAKLDSYSSFTTSPSEAVMR
310 320 330 340 350 360
Conf: 343224789998765401045799999986558889864333468764345799988864
Pred: CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: EHAYSRARTKNNYGSTIEGLLDLPDDDAPEEAGLAAPRLSFLPAGHTRRLSTAPPTDVSL
370 380 390 400 410 420
Conf: 321234731000010001452212345799999999999999887889976324778645
Pred: CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AA: GDELHLDGEDVAMAHADALDDFDLDMLGDGDSPGPGFTPHDSAPYGALDMADFEFEQMFT
430 440 450 460 470 480
Conf: 4213434589
Pred: HHHCCCCCCC
AA: DALGIDEYGG
490
Show Conservation Score by AL2CO
1 M -1.000 *
2 D -1.000 *
3 L -1.000 *
4 L -1.000 *
5 V -1.000 *
6 D -1.000 *
7 E -1.000 *
8 L -1.000 *
9 F -1.000 *
10 A -1.000 *
11 D -1.000 *
12 M -1.000 *
13 N -1.000 *
14 A -1.000 *
15 D -1.000 *
16 G -1.000 *
17 A -1.000 *
18 S -1.000 *
19 P -1.000 *
20 P -1.000 *
21 P -1.000 *
22 P -1.000 *
23 R -1.000 *
24 P -1.000 *
25 A -1.000 *
26 G -1.000 *
27 G -1.000 *
28 P -1.000 *
29 K -1.000 *
30 N -1.000 *
31 T -1.000 *
32 P -0.361
33 A -0.689
34 A -0.654
35 P 0.030
36 P 0.259
37 L -0.609
38 Y -0.617
39 A 0.677
40 T -0.671
41 G -1.000 *
42 R -1.000 *
43 L -0.426
44 S -0.235
45 Q -0.331
46 A -0.686
47 Q -0.091
48 L -0.360
49 M -0.408
50 P 0.703
51 S 0.063
52 P 1.649
53 P 1.101
54 M -0.699
55 P -0.061
56 V -0.791
57 P 0.406
58 P 1.094
59 A -0.439
60 A -0.653
61 L 2.400
62 F -0.183
63 N -1.083
64 R 0.143
65 L 0.651
66 L 0.080
67 D -1.270
68 D 1.279
69 L 2.400
70 G -0.499
71 F 1.721
72 S -0.976
73 A 0.444
74 G 0.682
75 P 0.552
76 A -0.561
77 L 0.484
78 C 0.060
79 T -0.306
80 M -1.334
81 L 0.926
82 D 0.761
83 T -0.571
84 W -0.269
85 N 2.400
86 E -0.220
87 D 2.400
88 L 0.890
89 F 1.721
90 S 1.721
91 A 0.113
92 L 0.094
93 P 2.400
94 T -1.142
95 N 0.460
96 A -1.190
97 D 0.402
98 L 0.274
99 Y 1.726
100 R -1.015
101 E -0.395
102 C -1.033
103 K -1.502
104 F -0.578
105 L 1.522
106 S 2.400
107 T -0.262
108 L -0.524
109 P 0.433
110 S -0.497
111 D 0.433
112 V 1.414
113 V -0.241
114 E -0.880
115 W -0.941
116 G -0.822
117 D -0.272
118 A -1.030
119 Y -1.044
120 V -0.961
121 P -0.406
122 E -1.342
123 R -0.693
124 T -0.670
125 Q -0.801
126 I -0.236
127 D 0.835
128 I 0.940
129 R -0.347
130 A -0.026
131 H 0.072
132 G 0.314
133 D -1.531
134 V -0.983
135 A -0.814
136 F -0.507
137 P 2.400
138 T -1.346
139 L -0.270
140 P 1.146
141 A -1.175
142 T -0.951
143 R -0.770
144 D -0.238
145 G 0.004
146 L 1.179
147 G -0.450
148 L -1.178
149 Y 2.400
150 Y -0.708
151 E -0.830
152 A -0.320
153 L 0.076
154 S -0.724
155 R -0.998
156 F 0.138
157 F 1.474
158 H -0.951
159 A -0.539
160 E 1.002
161 L 2.400
162 R 0.049
163 A 0.735
164 R 2.400
165 E 2.400
166 E -0.807
167 S -1.038
168 Y 2.400
169 R -1.013
170 T -0.727
171 V 0.399
172 L 1.307
173 A -1.513
174 N -0.507
175 F 0.931
176 C 1.726
177 S -0.629
178 A 0.943
179 L 0.585
180 Y -0.091
181 R -1.128
182 Y 1.440
183 L 1.313
184 R -0.219
185 A -0.942
186 S -0.685
187 V 0.266
188 R -0.752
189 Q -0.622
190 L -1.256
191 H -1.389
192 R 0.235
193 Q -0.628
194 A -0.813
195 H -1.125
196 M -1.083
197 R -1.390
198 G -1.165
199 R -1.371
200 D -1.277
201 R -1.662
202 D -0.881
203 L -0.820
204 G -1.454
205 E -1.262
206 M -0.593
207 L -0.317
208 R 0.199
209 A -0.981
210 T -1.224
211 I 0.506
212 A -0.512
213 D -1.042
214 R 0.291
215 Y 2.400
216 Y 2.400
217 R 1.017
218 E 0.599
219 T 0.212
220 A 0.260
221 R -0.228
222 L 0.327
223 A 1.726
224 R 0.163
225 V 0.471
226 L 0.136
227 F 0.358
228 L 0.568
229 H 1.721
230 L 1.399
231 Y 1.146
232 L 0.465
233 F -0.566
234 L 0.300
235 T -0.262
236 R 1.721
237 E 0.861
238 I 0.074
239 L 0.952
240 W -0.472
241 A -0.024
242 A -0.135
243 Y -0.761
244 A 0.260
245 E -0.570
246 Q 2.400
247 M -0.571
248 M -1.552
249 R -0.965
250 P 0.925
251 D -0.072
252 L 0.304
253 F 1.726
254 D -0.798
255 C -1.026
256 L 0.804
257 C -0.666
258 C 0.421
259 D -0.580
260 L 0.936
261 E -1.488
262 S -0.049
263 W -1.162
264 R 1.191
265 Q 0.568
266 L 1.278
267 A -0.862
268 G 1.022
269 L 0.457
270 F 1.204
271 Q 1.282
272 P 2.400
273 F -0.054
274 M 0.872
275 F 0.643
276 V -0.677
277 N 0.664
278 G 2.400
279 A -0.985
280 L -0.114
281 T -1.066
282 V 0.733
283 R -0.714
284 G 0.062
285 V -1.033
286 P 0.139
287 I 0.745
288 E -0.855
289 A -0.338
290 R -1.513
291 R -0.569
292 L 1.721
293 R 0.132
294 E -0.816
295 L -0.032
296 N 2.400
297 H 0.194
298 I 0.316
299 R 2.400
300 E -0.570
301 H -1.121
302 L 1.595
303 N 0.561
304 L 1.506
305 P 2.400
306 L 0.394
307 V 0.366
308 R 1.169
309 S -0.020
310 A -0.570
311 A 0.439
312 T 0.046
313 E 1.721
314 E -0.070
315 P -0.990
316 G -0.764
317 A -1.520
318 P 0.431
319 L -0.048
320 T -0.551
321 T -1.385
322 P -0.506
323 P 1.124
324 T -1.368
325 L 0.523
326 H -1.129
327 G -0.502
328 N -1.022
329 Q -0.390
330 A 0.516
331 R 1.146
332 A 0.255
333 S -0.289
334 G 0.969
335 Y 1.286
336 F 0.861
337 M -0.821
338 V -0.986
339 L -0.599
340 I 0.901
341 R 0.537
342 A -0.673
343 K 1.726
344 L 0.822
345 D 0.392
346 S 0.070
347 Y 0.975
348 S 0.183
349 S -1.011
350 F -1.371
351 T -0.734
352 T -0.520
353 S -0.795
354 P -1.158
355 S -0.569
356 E -1.035
357 A -1.437
358 V -0.771
359 M -1.345
360 R -1.323
361 E 0.479
362 H 1.212
363 A -0.590
364 Y 0.766
365 S -0.623
366 R 0.071
367 A -1.616
368 R -1.643
369 T -1.060
370 K -0.342
371 N -0.811
372 N 0.577
373 Y 0.763
374 G 1.187
375 S 0.475
376 T 0.865
377 I -0.395
378 E 0.307
379 G 0.334
380 L 0.372
381 L -0.096
382 D -1.132
383 L -0.623
384 P 0.084
385 D 0.135
386 D -0.562
387 D -0.513
388 A -1.509
389 P -0.973
390 E -0.989
391 E 0.094
392 A -0.535
393 G 0.030
394 L 0.959
395 A -0.369
396 A 0.132
397 P 1.669
398 R -0.853
399 L -1.045
400 S -0.216
401 F -0.378
402 L -0.583
403 P -0.410
404 A -1.064
405 G 0.202
406 H -0.903
407 T -0.622
408 R -0.625
409 R -0.056
410 L -0.867
411 S -0.041
412 T -0.084
413 A -0.022
414 P 0.335
415 P -0.905
416 T -1.000 *
417 D -0.002
418 V -1.000 *
419 S -1.000 *
420 L -1.000 *
421 G -1.000 *
422 D -1.000 *
423 E -1.000 *
424 L -1.000 *
425 H -1.000 *
426 L -1.000 *
427 D -1.000 *
428 G -1.000 *
429 E -1.000 *
430 D -1.000 *
431 V -1.000 *
432 A -1.000 *
433 M -1.000 *
434 A -1.000 *
435 H -1.000 *
436 A -1.000 *
437 D -1.000 *
438 A -1.000 *
439 L -1.000 *
440 D -1.000 *
441 D -1.000 *
442 F -1.000 *
443 D -1.000 *
444 L -1.000 *
445 D -1.000 *
446 M -1.000 *
447 L -1.000 *
448 G -1.000 *
449 D -1.000 *
450 G -1.000 *
451 D -1.000 *
452 S -1.000 *
453 P -1.000 *
454 G -1.000 *
455 P -1.000 *
456 G -1.000 *
457 F -1.000 *
458 T -1.000 *
459 P -1.000 *
460 H -1.000 *
461 D -1.000 *
462 S -1.000 *
463 A -1.000 *
464 P -1.000 *
465 Y -1.000 *
466 G -1.000 *
467 A -1.000 *
468 L -1.000 *
469 D -1.000 *
470 M -1.000 *
471 A -1.000 *
472 D -1.000 *
473 F -1.000 *
474 E -1.000 *
475 F -1.000 *
476 E -1.000 *
477 Q -1.000 *
478 M -1.000 *
479 F -1.000 *
480 T -1.000 *
481 D -1.000 *
482 A -1.000 *
483 L -1.000 *
484 G -1.000 *
485 I -1.000 *
486 D -1.000 *
487 E -1.000 *
488 Y -1.000 *
489 G -1.000 *
490 G -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 333.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MDLLVDELFA DMNADGASPP PPRPAGGPKN TPAAPPLYAT GRLSQAQLMP SPPMPVPPAA
70 80 90 100 110 120
LFNRLLDDLG FSAGPALCTM LDTWNEDLFS ALPTNADLYR ECKFLSTLPS DVVEWGDAYV
130 140 150 160 170 180
PERTQIDIRA HGDVAFPTLP ATRDGLGLYY EALSRFFHAE LRAREESYRT VLANFCSALY
190 200 210 220 230 240
RYLRASVRQL HRQAHMRGRD RDLGEMLRAT IADRYYRETA RLARVLFLHL YLFLTREILW
250 260 270 280 290 300
AAYAEQMMRP DLFDCLCCDL ESWRQLAGLF QPFMFVNGAL TVRGVPIEAR RLRELNHIRE
310 320 330 340 350 360
HLNLPLVRSA ATEEPGAPLT TPPTLHGNQA RASGYFMVLI RAKLDSYSSF TTSPSEAVMR
370 380 390 400 410 420
EHAYSRARTK NNYGSTIEGL LDLPDDDAPE EAGLAAPRLS FLPAGHTRRL STAPPTDVSL
430 440 450 460 470 480
GDELHLDGED VAMAHADALD DFDLDMLGDG DSPGPGFTPH DSAPYGALDM ADFEFEQMFT
490
DALGIDEYGG
One of the HSV tegument protein responsible for activating immediate-early genes. Funk et al. found this protein to have nuclear export activity using Nuclear EXport Trapped by RAPamycin (NEX-TRAP). Assay for LMB sensitivity using Myc-tagged protein showed exclusive nuclear localization of pUL48 and therefore LMB sensitivity was not established. However, X-ray structure shows the NES in the core of an alpha helical domain that appears inaccessible for CRM1 interaction.
[1]. "Comprehensive analysis of nuclear export of herpes simplex virus type 1 tegument proteins and their Epstein-Barr virus orthologs"
Funk C, Raschbichler V, Lieber D, Wetschky J, Arnold EK, Leimser J, Biggel M, Friedel CC, Ruzsics Z, Bailer SM. (2019)
Traffic,
20:152-167
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.