Summary for Jmjd3 (NES ID: 344)
Full Name
Jumonji domain-containing protein 3 UniProt
Alternative Names
Lysine-specific demethylase 6B (Kdm6b), [histone H3]-trimethyl-L-lysine(27) demethylase 6B
Organism
Homo sapiens (Human)
Experimental Evidence for CRM1-mediated Export
LMB Sensitive Ref.1The Localization of Histone H3K27me3 Demethylase Jmjd3 Is Dynamically Regulated, Kamikawa et al., Epigenetics, 2014
Mutations That Affect Nuclear Export
Unknown
Mutations That Affect CRM1 Binding
Unknown
Functional Export Signals
Undetermined
Secondary Structure of Export Signal
Unknown
Other Residues Important for Export
Unknown
Sequence
Show FASTA Format
>sp|O15054|KDM6B_HUMAN Lysine-specific demethylase 6B OS=Homo sapiens OX=9606 GN=KDM6B PE=1 SV=4 MHRAVDPPGARAAREAFALGGLSCAGAWSSCPPHPPPRSAWLPGGRCSASIGQPPLPAPL PPSHGSSSGHPSKPYYAPGAPTPRPLHGKLESLHGCVQALLREPAQPGLWEQLGQLYESE HDSEEATRCYHSALRYGGSFAELGPRIGRLQQAQLWNFHTGSCQHRAKVLPPLEQVWNLL HLEHKRNYGAKRGGPPVKRAAEPPVVQPVPPAALSGPSGEEGLSPGGKRRRGCNSEQTGL PPGLPLPPPPLPPPPPPPPPPPPPLPGLATSPPFQLTKPGLWSTLHGDAWGPERKGSAPP ERQEQRHSLPHPYPYPAPAYTAHPPGHRLVPAAPPGPGPRPPGAESHGCLPATRPPGSDL RESRVQRSRMDSSVSPAATTACVPYAPSRPPGLPGTTTSSSSSSSSNTGLRGVEPNPGIP GADHYQTPALEVSHHGRLGPSAHSSRKPFLGAPAATPHLSLPPGPSSPPPPPCPRLLRPP PPPAWLKGPACRAAREDGEILEELFFGTEGPPRPAPPPLPHREGFLGPPASRFSVGTQDS HTPPTPPTPTTSSSNSNSGSHSSSPAGPVSFPPPPYLARSIDPLPRPPSPAQNPQDPPLV PLTLALPPAPPSSCHQNTSGSFRRPESPRPRVSFPKTPEVGPGPPPGPLSKAPQPVPPGV GELPARGPRLFDFPPTPLEDQFEEPAEFKILPDGLANIMKMLDESIRKEEEQQQHEAGVA PQPPLKEPFASLQSPFPTDTAPTTTAPAVAVTTTTTTTTTTTATQEEEKKPPPALPPPPP LAKFPPPSQPQPPPPPPPSPASLLKSLASVLEGQKYCYRGTGAAVSTRPGPLPTTQYSPG PPSGATALPPTSAAPSAQGSPQPSASSSSQFSTSGGPWARERRAGEEPVPGPMTPTQPPP PLSLPPARSESEVLEEISRACETLVERVGRSATDPADPVDTAEPADSGTERLLPPAQAKE EAGGVAAVSGSCKRRQKEHQKEHRRHRRACKDSVGRRPREGRAKAKAKVPKEKSRRVLGN LDLQSEEIQGREKSRPDLGGASKAKPPTAPAPPSAPAPSAQPTPPSASVPGKKAREEAPG PPGVSRADMLKLRSLSEGPPKELKIRLIKVESGDKETFIASEVEERRLRMADLTISHCAA DVVRASRNAKVKGKFRESYLSPAQSVKPKINTEEKLPREKLNPPTPSIYLESKRDAFSPV LLQFCTDPRNPITVIRGLAGSLRLNLGLFSTKTLVEASGEHTVEVRTQVQQPSDENWDLT GTRQIWPCESSRSHTTIAKYAQYQASSFQESLQEEKESEDEESEEPDSTTGTPPSSAPDP KNHHIIKFGTNIDLSDAKRWKPQLQELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQLYM KVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAFCDRHGVDYLTGSWWPI LDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQLALERY EWNEVKNVKSIVPMIHVSWNVARTVKISDPDLFKMIKFCLLQSMKHCQVQRESLVRAGKK IAYQGRVKDEPAYYCNECDVEVFNILFVTSENGSRNTYLVHCEGCARRRSAGLQGVVVLE QYRTEELAQAYDAFTLAPASTSRShow Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 976778999975454345599789999998999999999988998889888999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MHRAVDPPGARAAREAFALGGLSCAGAWSSCPPHPPPRSAWLPGGRCSASIGQPPLPAPL
10 20 30 40 50 60
Conf: 999999999999898899998889999873310011001357999998100047544679
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
AA: PPSHGSSSGHPSKPYYAPGAPTPRPLHGKLESLHGCVQALLREPAQPGLWEQLGQLYESE
70 80 90 100 110 120
Conf: 999610013543213699988998502110001124789888888788899834454333
Pred: CCCCCHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AA: HDSEEATRCYHSALRYGGSFAELGPRIGRLQQAQLWNFHTGSCQHRAKVLPPLEQVWNLL
130 140 150 160 170 180
Conf: 353321379888999988999998557899987789999999999976766778878889
Pred: HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: HLEHKRNYGAKRGGPPVKRAAEPPVVQPVPPAALSGPSGEEGLSPGGKRRRGCNSEQTGL
190 200 210 220 230 240
Conf: 999999999999999999999999999999899756889977677789998864579998
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: PPGLPLPPPPLPPPPPPPPPPPPPLPGLATSPPFQLTKPGLWSTLHGDAWGPERKGSAPP
250 260 270 280 290 300
Conf: 311347888999998999888999988789999999999999999899999989999886
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: ERQEQRHSLPHPYPYPAPAYTAHPPGHRLVPAAPPGPGPRPPGAESHGCLPATRPPGSDL
310 320 330 340 350 360
Conf: 545434668998899999879998999999999998766789999999999999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: RESRVQRSRMDSSVSPAATTACVPYAPSRPPGLPGTTTSSSSSSSSNTGLRGVEPNPGIP
370 380 390 400 410 420
Conf: 999999982224789999999878899899999999998899999999999999988999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: GADHYQTPALEVSHHGRLGPSAHSSRKPFLGAPAATPHLSLPPGPSSPPPPPCPRLLRPP
430 440 450 460 470 480
Conf: 999988899887545442012220368999999999999998888899999987788999
Pred: CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: PPPAWLKGPACRAAREDGEILEELFFGTEGPPRPAPPPLPHREGFLGPPASRFSVGTQDS
490 500 510 520 530 540
Conf: 999999999989999999998999999998999976767789999999999999999998
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: HTPPTPPTPTTSSSNSNSGSHSSSPAGPVSFPPPPYLARSIDPLPRPPSPAQNPQDPPLV
550 560 570 580 590 600
Conf: 876689999999899899888789999999998899999999999999999999999988
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: PLTLALPPAPPSSCHQNTSGSFRRPESPRPRVSFPKTPEVGPGPPPGPLSKAPQPVPPGV
610 620 630 640 650 660
Conf: 999999998889999964522468310025814455573200110010899975525999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCC
AA: GELPARGPRLFDFPPTPLEDQFEEPAEFKILPDGLANIMKMLDESIRKEEEQQQHEAGVA
670 680 690 700 710 720
Conf: 999988897668999989999999999755667888999999882113799999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: PQPPLKEPFASLQSPFPTDTAPTTTAPAVAVTTTTTTTTTTTATQEEEKKPPPALPPPPP
730 740 750 760 770 780
Conf: 989999999999999999943000020102058841324788988999999998889889
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
AA: LAKFPPPSQPQPPPPPPPSPASLLKSLASVLEGQKYCYRGTGAAVSTRPGPLPTTQYSPG
790 800 810 820 830 840
Conf: 999998899999999999999999999998678899861024799887899999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: PPSGATALPPTSAAPSAQGSPQPSASSSSQFSTSGGPWARERRAGEEPVPGPMTPTQPPP
850 860 870 880 890 900
Conf: 999999877146787642011100012488988999999988888989878999655432
Pred: CCCCCCCCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: PLSLPPARSESEVLEEISRACETLVERVGRSATDPADPVDTAEPADSGTERLLPPAQAKE
910 920 930 940 950 960
Conf: 258964468874002443312123234444567889897552101247975434322377
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: EAGGVAAVSGSCKRRQKEHQKEHRRHRRACKDSVGRRPREGRAKAKAKVPKEKSRRVLGN
970 980 990 1000 1010 1020
Conf: 652100000233567898988778999999999999998899999888778887656899
Pred: CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: LDLQSEEIQGREKSRPDLGGASKAKPPTAPAPPSAPAPSAQPTPPSASVPGKKAREEAPG
1030 1040 1050 1060 1070 1080
Conf: 997544640111213469962221435201479964201010112013464321132278
Pred: CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHH
AA: PPGVSRADMLKLRSLSEGPPKELKIRLIKVESGDKETFIASEVEERRLRMADLTISHCAA
1090 1100 1110 1120 1130 1140
Conf: 999984214324554333345798789888888889866589999841004544555501
Pred: HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
AA: DVVRASRNAKVKGKFRESYLSPAQSVKPKINTEEKLPREKLNPPTPSIYLESKRDAFSPV
1150 1160 1170 1180 1190 1200
Conf: 441125999970676513332101224433200330258413898630138886788988
Pred: HHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCC
AA: LLQFCTDPRNPITVIRGLAGSLRLNLGLFSTKTLVEASGEHTVEVRTQVQQPSDENWDLT
1210 1220 1230 1240 1250 1260
Conf: 973123076878614699877664555788888831166422469999999999999999
Pred: CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
AA: GTRQIWPCESSRSHTTIAKYAQYQASSFQESLQEEKESEDEESEEPDSTTGTPPSSAPDP
1270 1280 1290 1300 1310 1320
Conf: 885256611344688534552769976227853999105850000134001352179987
Pred: CCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCHHCCCCEECCCCEEEEEE
AA: KNHHIIKFGTNIDLSDAKRWKPQLQELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQLYM
1330 1340 1350 1360 1370 1380
Conf: 448999998667886127862116895102363034799999888650995334554310
Pred: ECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCHH
AA: KVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAFCDRHGVDYLTGSWWPI
1390 1400 1410 1420 1430 1440
Conf: 376541399804520269967999368056776402344322245565046787765321
Pred: HHHHHHCCCCEEEEECCCCCEEEEECCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
AA: LDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQLALERY
1450 1460 1470 1480 1490 1500
Conf: 122212322100046775431003523692568999999995223589999999970856
Pred: CCCCCCCCCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
AA: EWNEVKNVKSIVPMIHVSWNVARTVKISDPDLFKMIKFCLLQSMKHCQVQRESLVRAGKK
1510 1520 1530 1540 1550 1560
Conf: 685124589965345666423687899941489734299962102210158975329983
Pred: EEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEECCHHHHHCCCCCCCEEEEE
AA: IAYQGRVKDEPAYYCNECDVEVFNILFVTSENGSRNTYLVHCEGCARRRSAGLQGVVVLE
1570 1580 1590 1600 1610 1620
Conf: 00249999750151424699999
Pred: ECCHHHHHHHHCCCEECCCCCCC
AA: QYRTEELAQAYDAFTLAPASTSR
1630 1640
Show Conservation Score by AL2CO
1 M -1.000 *
2 H -1.000 *
3 R -1.000 *
4 A -1.000 *
5 V -1.000 *
6 D -1.000 *
7 P -1.000 *
8 P -1.000 *
9 G -1.000 *
10 A -1.000 *
11 R -1.000 *
12 A -1.000 *
13 A -1.000 *
14 R -1.000 *
15 E -1.000 *
16 A -1.000 *
17 F -1.000 *
18 A -1.000 *
19 L -1.000 *
20 G -1.000 *
21 G -1.000 *
22 L -1.000 *
23 S -1.000 *
24 C -1.000 *
25 A -1.000 *
26 G -1.000 *
27 A -1.000 *
28 W -1.000 *
29 S -1.000 *
30 S -1.000 *
31 C -1.000 *
32 P -1.000 *
33 P -1.000 *
34 H -1.000 *
35 P -1.000 *
36 P -1.000 *
37 P -1.000 *
38 R -1.000 *
39 S -1.000 *
40 A -1.000 *
41 W -1.000 *
42 L -1.000 *
43 P -1.000 *
44 G -1.000 *
45 G -1.000 *
46 R -1.000 *
47 C -1.000 *
48 S -1.000 *
49 A -1.000 *
50 S -1.000 *
51 I -1.000 *
52 G -1.000 *
53 Q -1.000 *
54 P -1.000 *
55 P -1.000 *
56 L -1.000 *
57 P -1.000 *
58 A -1.000 *
59 P -1.000 *
60 L -1.000 *
61 P -1.000 *
62 P -1.000 *
63 S -1.000 *
64 H -1.000 *
65 G -1.000 *
66 S -1.000 *
67 S -1.000 *
68 S -1.000 *
69 G -1.000 *
70 H -1.000 *
71 P -1.000 *
72 S -1.000 *
73 K -1.000 *
74 P -1.000 *
75 Y -1.000 *
76 Y -1.000 *
77 A -1.000 *
78 P -1.000 *
79 G -1.000 *
80 A -1.000 *
81 P -1.000 *
82 T -1.000 *
83 P -1.000 *
84 R -1.000 *
85 P -1.000 *
86 L -1.000 *
87 H -1.000 *
88 G -1.000 *
89 K -1.000 *
90 L -1.000 *
91 E -1.000 *
92 S -1.000 *
93 L -1.000 *
94 H -1.000 *
95 G -1.000 *
96 C -1.000 *
97 V -1.000 *
98 Q -1.000 *
99 A -1.000 *
100 L -1.000 *
101 L -1.000 *
102 R -1.000 *
103 E -1.000 *
104 P -1.000 *
105 A -1.000 *
106 Q -1.000 *
107 P -1.000 *
108 G -1.000 *
109 L -1.000 *
110 W -1.000 *
111 E -1.000 *
112 Q -1.000 *
113 L -1.000 *
114 G -1.000 *
115 Q -1.000 *
116 L -1.000 *
117 Y -1.000 *
118 E -1.000 *
119 S -1.000 *
120 E -1.000 *
121 H -1.000 *
122 D -1.000 *
123 S -1.000 *
124 E -1.000 *
125 E -1.000 *
126 A -1.000 *
127 T -1.000 *
128 R -1.000 *
129 C -1.000 *
130 Y -1.000 *
131 H -1.000 *
132 S -1.000 *
133 A -1.000 *
134 L -1.000 *
135 R -1.000 *
136 Y -1.000 *
137 G -1.000 *
138 G -1.000 *
139 S -1.000 *
140 F -1.000 *
141 A -1.000 *
142 E -1.000 *
143 L -1.000 *
144 G -1.000 *
145 P -1.000 *
146 R -1.000 *
147 I -1.000 *
148 G -1.000 *
149 R -1.000 *
150 L -1.000 *
151 Q -1.000 *
152 Q -1.000 *
153 A -1.000 *
154 Q -1.000 *
155 L -1.000 *
156 W -1.000 *
157 N -1.000 *
158 F -1.000 *
159 H -1.000 *
160 T -1.000 *
161 G -1.000 *
162 S -1.000 *
163 C -1.000 *
164 Q -1.000 *
165 H -1.000 *
166 R -1.000 *
167 A -1.000 *
168 K -1.000 *
169 V -1.000 *
170 L -1.000 *
171 P -1.000 *
172 P -1.000 *
173 L -1.000 *
174 E -1.000 *
175 Q -1.000 *
176 V -1.000 *
177 W -1.000 *
178 N -1.000 *
179 L -1.000 *
180 L -1.000 *
181 H -1.000 *
182 L -1.000 *
183 E -1.000 *
184 H -1.000 *
185 K -1.000 *
186 R -1.000 *
187 N -1.000 *
188 Y -1.000 *
189 G -1.000 *
190 A -1.000 *
191 K -1.000 *
192 R -1.000 *
193 G -1.000 *
194 G -1.000 *
195 P -1.000 *
196 P -1.000 *
197 V -1.000 *
198 K -1.000 *
199 R -1.000 *
200 A -1.000 *
201 A -1.000 *
202 E -1.000 *
203 P -1.000 *
204 P -1.000 *
205 V -1.000 *
206 V -1.000 *
207 Q -1.000 *
208 P -1.000 *
209 V -1.000 *
210 P -1.000 *
211 P -1.000 *
212 A -1.000 *
213 A -1.000 *
214 L -1.000 *
215 S -1.000 *
216 G -1.000 *
217 P -1.000 *
218 S -1.000 *
219 G -1.000 *
220 E -1.000 *
221 E -1.000 *
222 G -1.000 *
223 L -1.000 *
224 S -1.000 *
225 P -1.000 *
226 G -1.000 *
227 G -1.000 *
228 K -1.000 *
229 R -1.000 *
230 R -1.000 *
231 R -1.000 *
232 G -1.000 *
233 C -1.000 *
234 N -1.000 *
235 S -1.000 *
236 E -1.000 *
237 Q -1.000 *
238 T -1.000 *
239 G -1.000 *
240 L -1.000 *
241 P -1.000 *
242 P -1.000 *
243 G -1.000 *
244 L -1.000 *
245 P -1.000 *
246 L -1.000 *
247 P -1.000 *
248 P -1.000 *
249 P -1.000 *
250 P -1.000 *
251 L -1.000 *
252 P -1.000 *
253 P -1.000 *
254 P -1.000 *
255 P -1.000 *
256 P -1.000 *
257 P -1.000 *
258 P -1.000 *
259 P -1.000 *
260 P -1.000 *
261 P -1.000 *
262 P -1.000 *
263 P -1.000 *
264 P -1.000 *
265 L -1.000 *
266 P -1.000 *
267 G -1.000 *
268 L -1.000 *
269 A -1.000 *
270 T -1.000 *
271 S -1.000 *
272 P -1.000 *
273 P -1.000 *
274 F -1.000 *
275 Q -1.000 *
276 L -1.000 *
277 T -1.000 *
278 K -1.000 *
279 P -1.000 *
280 G -1.000 *
281 L -1.000 *
282 W -1.000 *
283 S -1.000 *
284 T -1.000 *
285 L -1.000 *
286 H -1.000 *
287 G -1.000 *
288 D -1.000 *
289 A -1.000 *
290 W -1.000 *
291 G -1.000 *
292 P -1.000 *
293 E -1.000 *
294 R -1.000 *
295 K -1.000 *
296 G -1.000 *
297 S -1.000 *
298 A -1.000 *
299 P -1.000 *
300 P -1.000 *
301 E -1.000 *
302 R -1.000 *
303 Q -1.000 *
304 E -1.000 *
305 Q -1.000 *
306 R -1.000 *
307 H -1.000 *
308 S -1.000 *
309 L -1.000 *
310 P -1.000 *
311 H -1.000 *
312 P -1.000 *
313 Y -1.000 *
314 P -1.000 *
315 Y -1.000 *
316 P -1.000 *
317 A -1.000 *
318 P -1.000 *
319 A -1.000 *
320 Y -1.000 *
321 T -1.000 *
322 A -1.000 *
323 H -1.000 *
324 P -1.000 *
325 P -1.000 *
326 G -1.000 *
327 H -1.000 *
328 R -1.000 *
329 L -1.000 *
330 V -1.000 *
331 P -1.000 *
332 A -1.000 *
333 A -1.000 *
334 P -1.000 *
335 P -1.000 *
336 G -1.000 *
337 P -1.000 *
338 G -1.000 *
339 P -1.000 *
340 R -1.000 *
341 P -1.000 *
342 P -1.000 *
343 G -1.000 *
344 A -1.000 *
345 E -1.000 *
346 S -1.000 *
347 H -1.000 *
348 G -1.000 *
349 C -1.000 *
350 L -1.000 *
351 P -1.000 *
352 A -1.000 *
353 T -1.000 *
354 R -1.000 *
355 P -1.000 *
356 P -1.000 *
357 G -1.000 *
358 S -1.000 *
359 D -1.000 *
360 L -1.000 *
361 R -1.000 *
362 E -1.000 *
363 S -1.000 *
364 R -1.000 *
365 V -1.000 *
366 Q -1.000 *
367 R -1.000 *
368 S -1.000 *
369 R -1.000 *
370 M -1.000 *
371 D -1.000 *
372 S -1.000 *
373 S -1.000 *
374 V -1.000 *
375 S -1.000 *
376 P -1.000 *
377 A -1.000 *
378 A -1.000 *
379 T -1.000 *
380 T -1.000 *
381 A -1.000 *
382 C -1.000 *
383 V -1.000 *
384 P -1.000 *
385 Y -1.000 *
386 A -1.000 *
387 P -1.000 *
388 S -1.000 *
389 R -1.000 *
390 P -1.000 *
391 P -1.000 *
392 G -1.000 *
393 L -1.000 *
394 P -1.000 *
395 G -1.000 *
396 T -1.000 *
397 T -1.000 *
398 T -1.000 *
399 S -1.000 *
400 S -1.000 *
401 S -1.000 *
402 S -1.000 *
403 S -1.000 *
404 S -1.000 *
405 S -1.000 *
406 S -1.000 *
407 N -1.000 *
408 T -1.000 *
409 G -1.000 *
410 L -1.000 *
411 R -1.000 *
412 G -1.000 *
413 V -1.000 *
414 E -1.000 *
415 P -1.000 *
416 N -1.000 *
417 P -1.000 *
418 G -1.000 *
419 I -1.000 *
420 P -1.000 *
421 G -1.000 *
422 A -1.000 *
423 D -1.000 *
424 H -1.000 *
425 Y -1.000 *
426 Q -1.000 *
427 T -1.000 *
428 P -1.000 *
429 A -1.000 *
430 L -1.000 *
431 E -1.000 *
432 V -1.000 *
433 S -1.000 *
434 H -1.000 *
435 H -1.000 *
436 G -1.000 *
437 R -1.000 *
438 L -1.000 *
439 G -1.000 *
440 P -1.000 *
441 S -1.000 *
442 A -1.000 *
443 H -1.000 *
444 S -1.000 *
445 S -1.000 *
446 R -1.000 *
447 K -1.000 *
448 P -1.000 *
449 F -1.000 *
450 L -1.000 *
451 G -1.000 *
452 A -1.000 *
453 P -1.000 *
454 A -1.000 *
455 A -1.000 *
456 T -1.000 *
457 P -1.000 *
458 H -1.000 *
459 L -1.000 *
460 S -1.000 *
461 L -1.000 *
462 P -1.000 *
463 P -1.000 *
464 G -1.000 *
465 P -1.000 *
466 S -1.000 *
467 S -1.000 *
468 P -1.000 *
469 P -1.000 *
470 P -1.000 *
471 P -1.000 *
472 P -1.000 *
473 C -1.000 *
474 P -1.000 *
475 R -1.000 *
476 L -1.000 *
477 L -1.000 *
478 R -1.000 *
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1433 L 1.592
1434 T 0.291
1435 G 1.499
1436 S 2.300
1437 W 2.300
1438 W 2.300
1439 P 2.300
1440 I 0.469
1441 L 1.108
1442 D 1.085
1443 D 1.592
1444 L 2.300
1445 Y 0.756
1446 A -0.236
1447 S 0.235
1448 N 0.797
1449 I 1.103
1450 P 1.592
1451 V 1.492
1452 Y 1.592
1453 R 2.300
1454 F 1.592
1455 V 1.081
1456 Q 1.592
1457 R 2.300
1458 P 2.300
1459 G 1.592
1460 D 2.300
1461 L 1.063
1462 V 1.592
1463 W 1.592
1464 I 1.019
1465 N 1.108
1466 A 1.091
1467 G 2.300
1468 T 1.062
1469 V 1.473
1470 H 2.300
1471 W 2.300
1472 V 2.300
1473 Q 2.300
1474 A 2.300
1475 T 1.016
1476 G 2.300
1477 W 2.300
1478 C 2.300
1479 N 2.300
1480 N 2.300
1481 I 1.528
1482 A 1.002
1483 W 2.300
1484 N 2.300
1485 V 1.503
1486 G 2.300
1487 P 2.300
1488 L 1.072
1489 T 0.468
1490 A 0.255
1491 Y 0.110
1492 Q 0.823
1493 Y 1.657
1494 Q 0.786
1495 L 0.768
1496 A 1.643
1497 L 0.558
1498 E 1.642
1499 R 1.643
1500 Y 1.473
1501 E 1.643
1502 W 2.300
1503 N 2.300
1504 E 0.528
1505 V 0.478
1506 K 1.105
1507 N 0.346
1508 V 1.170
1509 K 1.643
1510 S 1.643
1511 I -0.091
1512 V 1.643
1513 P 1.643
1514 M 1.173
1515 I 0.331
1516 H 1.643
1517 V 1.107
1518 S 1.491
1519 W 1.643
1520 N 1.643
1521 V 0.232
1522 A 1.643
1523 R 1.182
1524 T 0.555
1525 V 0.993
1526 K 1.656
1527 I 1.477
1528 S 0.818
1529 D 1.643
1530 P -0.444
1531 D 0.072
1532 L 0.821
1533 F 0.766
1534 K 0.259
1535 M 0.777
1536 I 0.706
1537 K 1.075
1538 F 0.747
1539 C 1.144
1540 L 1.667
1541 L 1.050
1542 Q 1.012
1543 S 1.019
1544 M 1.005
1545 K 1.656
1546 H 0.799
1547 C 0.561
1548 Q 0.832
1549 V -0.005
1550 Q 0.460
1551 R 1.106
1552 E 0.839
1553 S -0.340
1554 L 1.135
1555 V -0.148
1556 R -0.035
1557 A -0.386
1558 G 1.588
1559 K 0.547
1560 K 0.806
1561 I 0.467
1562 A -0.353
1563 Y 0.737
1564 Q 0.668
1565 G 0.525
1566 R 2.300
1567 V 0.047
1568 K 0.720
1569 D 0.718
1570 E 2.300
1571 P 1.544
1572 A 1.667
1573 Y 1.115
1574 Y 2.300
1575 C 2.300
1576 N 0.289
1577 E 0.472
1578 C 2.300
1579 D 1.494
1580 V 0.552
1581 E 0.842
1582 V 0.840
1583 F 1.212
1584 N 0.564
1585 I 0.799
1586 L 1.666
1587 F 0.748
1588 V 1.203
1589 T 0.810
1590 S 0.227
1591 E 1.187
1592 N 0.256
1593 G -0.044
1594 S -0.076
1595 R 0.112
1596 N 0.545
1597 T 0.010
1598 Y 0.300
1599 L 0.071
1600 V 1.614
1601 H 0.863
1602 C 1.682
1603 E 0.708
1604 G -0.075
1605 C 1.569
1606 A 1.219
1607 R 0.171
1608 R -0.218
1609 R -0.555
1610 S 0.340
1611 A -0.222
1612 G -0.453
1613 L 0.822
1614 Q -0.145
1615 G 0.679
1616 V 1.112
1617 V 1.540
1618 V 0.800
1619 L 0.861
1620 E 2.300
1621 Q 1.124
1622 Y 0.751
1623 R 0.533
1624 T 0.645
1625 E 0.814
1626 E 1.480
1627 L 1.583
1628 A 0.468
1629 Q -0.240
1630 A 0.413
1631 Y 0.865
1632 D 1.680
1633 A 0.055
1634 F 0.830
1635 T -0.319
1636 L 1.510
1637 A 0.257
1638 P -0.046
1639 A -0.455
1640 S 0.279
1641 T -1.000 *
1642 S -1.000 *
1643 R -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 344.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60MHRAVDPPGA RAAREAFALG GLSCAGAWSS CPPHPPPRSA WLPGGRCSAS IGQPPLPAPL70 80 90 100 110 120PPSHGSSSGH PSKPYYAPGA PTPRPLHGKL ESLHGCVQAL LREPAQPGLW EQLGQLYESE130 140 150 160 170 180HDSEEATRCY HSALRYGGSF AELGPRIGRL QQAQLWNFHT GSCQHRAKVL PPLEQVWNLL190 200 210 220 230 240HLEHKRNYGA KRGGPPVKRA AEPPVVQPVP PAALSGPSGE EGLSPGGKRR RGCNSEQTGL250 260 270 280 290 300PPGLPLPPPP LPPPPPPPPP PPPPLPGLAT SPPFQLTKPG LWSTLHGDAW GPERKGSAPP310 320 330 340 350 360ERQEQRHSLP HPYPYPAPAY TAHPPGHRLV PAAPPGPGPR PPGAESHGCL PATRPPGSDL370 380 390 400 410 420RESRVQRSRM DSSVSPAATT ACVPYAPSRP PGLPGTTTSS SSSSSSNTGL RGVEPNPGIP430 440 450 460 470 480GADHYQTPAL EVSHHGRLGP SAHSSRKPFL GAPAATPHLS LPPGPSSPPP PPCPRLLRPP490 500 510 520 530 540PPPAWLKGPA CRAAREDGEI LEELFFGTEG PPRPAPPPLP HREGFLGPPA SRFSVGTQDS550 560 570 580 590 600HTPPTPPTPT TSSSNSNSGS HSSSPAGPVS FPPPPYLARS IDPLPRPPSP AQNPQDPPLV610 620 630 640 650 660PLTLALPPAP PSSCHQNTSG SFRRPESPRP RVSFPKTPEV GPGPPPGPLS KAPQPVPPGV670 680 690 700 710 720GELPARGPRL FDFPPTPLED QFEEPAEFKI LPDGLANIMK MLDESIRKEE EQQQHEAGVA730 740 750 760 770 780PQPPLKEPFA SLQSPFPTDT APTTTAPAVA VTTTTTTTTT TTATQEEEKK PPPALPPPPP790 800 810 820 830 840LAKFPPPSQP QPPPPPPPSP ASLLKSLASV LEGQKYCYRG TGAAVSTRPG PLPTTQYSPG850 860 870 880 890 900PPSGATALPP TSAAPSAQGS PQPSASSSSQ FSTSGGPWAR ERRAGEEPVP GPMTPTQPPP910 920 930 940 950 960PLSLPPARSE SEVLEEISRA CETLVERVGR SATDPADPVD TAEPADSGTE RLLPPAQAKE970 980 990 1000 1010 1020EAGGVAAVSG SCKRRQKEHQ KEHRRHRRAC KDSVGRRPRE GRAKAKAKVP KEKSRRVLGN1030 1040 1050 1060 1070 1080LDLQSEEIQG REKSRPDLGG ASKAKPPTAP APPSAPAPSA QPTPPSASVP GKKAREEAPG1090 1100 1110 1120 1130 1140PPGVSRADML KLRSLSEGPP KELKIRLIKV ESGDKETFIA SEVEERRLRM ADLTISHCAA1150 1160 1170 1180 1190 1200DVVRASRNAK VKGKFRESYL SPAQSVKPKI NTEEKLPREK LNPPTPSIYL ESKRDAFSPV1210 1220 1230 1240 1250 1260LLQFCTDPRN PITVIRGLAG SLRLNLGLFS TKTLVEASGE HTVEVRTQVQ QPSDENWDLT1270 1280 1290 1300 1310 1320GTRQIWPCES SRSHTTIAKY AQYQASSFQE SLQEEKESED EESEEPDSTT GTPPSSAPDP1330 1340 1350 1360 1370 1380KNHHIIKFGT NIDLSDAKRW KPQLQELLKL PAFMRVTSTG NMLSHVGHTI LGMNTVQLYM1390 1400 1410 1420 1430 1440KVPGSRTPGH QENNNFCSVN INIGPGDCEW FAVHEHYWET ISAFCDRHGV DYLTGSWWPI1450 1460 1470 1480 1490 1500LDDLYASNIP VYRFVQRPGD LVWINAGTVH WVQATGWCNN IAWNVGPLTA YQYQLALERY1510 1520 1530 1540 1550 1560EWNEVKNVKS IVPMIHVSWN VARTVKISDP DLFKMIKFCL LQSMKHCQVQ RESLVRAGKK1570 1580 1590 1600 1610 1620IAYQGRVKDE PAYYCNECDV EVFNILFVTS ENGSRNTYLV HCEGCARRRS AGLQGVVVLE1630 1640QYRTEELAQA YDAFTLAPAS TSR
3D Structures in PDB
Comments
Jmjd3 is the histone demethylase responsible for demethylation of H3K27me3 and plays critical role in regulation of cellular development and differentiation. It is found enriched in the nucleus. Kamikawa and Donohoe found that Jmjd3 is a nucleoctyoplasmic trafficking protein. Nuclear import of Jmjd3 is mediated by a two N-terminal NLSs. DNA damage induced by mitomycin C treatment decreases nuclear accumulation of Jmjd3, which can be reverted by LMB treatment, suggesting that Jmjd3 may contain an NES. No putative NES sequences have been identified yet. Ref.1The Localization of Histone H3K27me3 Demethylase Jmjd3 Is Dynamically Regulated, Kamikawa et al., Epigenetics, 2014
References
[1]. "The Localization of Histone H3K27me3 Demethylase Jmjd3 Is Dynamically Regulated"
Kamikawa YF, Donohoe ME. (2014) Epigenetics, 9(6):834-41 PubMed
Kamikawa YF, Donohoe ME. (2014) Epigenetics, 9(6):834-41 PubMed
User Input
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