Nuclear receptor subfamily 4 group A member 1
UniProt
Nuclear hormone receptor NUR/77(Nur77), Early response protein NAK1, Orphan nuclear receptor HMR, Orphan nuclear receptor TR3, Testicular receptor 3, ST-59
*shown as underlined residues in the full sequence
454RSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPAFACLSALVLIT
DRHGLQEP
521 Ref.2Modulation of retinoid signalling through NGF-induced nuclear export of NGFI-B., Katagiri et al., Nat Cell Biol, 2000
Show FASTA Format
>sp|P22736|NR4A1_HUMAN Nuclear receptor subfamily 4 group A member 1 OS=Homo sapiens OX=9606 GN=NR4A1 PE=1 SV=1
MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
PANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKW
AEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG
DWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVA
AVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMDTLPF
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 961356778999999988988899999888765556799987788999999843346887
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
10 20 30 40 50 60
Conf: 788775211589999999888989988898888999987732246655688999999994
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
70 80 90 100 110 120
Conf: 322589999876799999999999999999999999999789998855876433468899
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
130 140 150 160 170 180
Conf: 899999987656999999999878889889986555577999898998999999999997
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
190 200 210 220 230 240
Conf: 799987899888878999999999986657998753212200246888863344124866
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
AA: EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
250 260 270 280 290 300
Conf: 876048999887575687644443101104530104317997766899999999999999
Pred: EEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
AA: YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
310 320 330 340 350 360
Conf: 961788988631036999899874232347789999997346999999643459999988
Pred: CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AA: PANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKW
370 380 390 400 410 420
Conf: 641999989990137789887767999987513459999956870430000000000013
Pred: HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEHHCCCCCHH
AA: AEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG
430 440 450 460 470 480
Conf: 578989999982001557345788999999875047999952599999999998864211
Pred: HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC
AA: DWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVA
490 500 510 520 530 540
Conf: 5689999998468875466023445220022554444059899974788642026999
Pred: CCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC
AA: AVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMDTLPF
550 560 570 580 590
Show Conservation Score by AL2CO
1 M -1.000 *
2 P -1.000 *
3 C -1.000 *
4 I -1.000 *
5 Q -1.000 *
6 A -1.000 *
7 Q -1.000 *
8 Y -1.000 *
9 G -1.000 *
10 T -1.000 *
11 P -1.000 *
12 A -1.000 *
13 P -1.000 *
14 S -1.000 *
15 P -1.000 *
16 G -1.000 *
17 P -1.000 *
18 R -1.000 *
19 D -1.000 *
20 H -1.000 *
21 L -1.000 *
22 A -1.000 *
23 S -1.000 *
24 D -1.000 *
25 P -1.000 *
26 L -1.000 *
27 T -1.000 *
28 P -1.000 *
29 E -1.000 *
30 F -1.000 *
31 I -1.000 *
32 K -1.000 *
33 P -1.000 *
34 T -1.000 *
35 M -1.000 *
36 D -1.000 *
37 L -1.000 *
38 A -1.000 *
39 S -1.000 *
40 P -1.000 *
41 E -1.000 *
42 A -1.000 *
43 A -1.000 *
44 P -1.000 *
45 A -1.000 *
46 A -1.000 *
47 P -1.000 *
48 T -1.000 *
49 A -1.000 *
50 L -1.000 *
51 P -1.000 *
52 S -1.000 *
53 F -1.000 *
54 S -1.000 *
55 T -1.000 *
56 F -1.000 *
57 M -1.000 *
58 D -1.000 *
59 G -1.000 *
60 Y -1.000 *
61 T -1.000 *
62 G -1.000 *
63 E -1.000 *
64 F -1.000 *
65 D -1.000 *
66 T -1.000 *
67 F -1.000 *
68 L -1.000 *
69 Y -1.000 *
70 Q -1.000 *
71 L -1.000 *
72 P -1.000 *
73 G -1.000 *
74 T -1.000 *
75 V -1.000 *
76 Q -1.000 *
77 P -1.000 *
78 C -1.000 *
79 S -1.000 *
80 S -1.000 *
81 A -1.000 *
82 S -1.000 *
83 S -1.000 *
84 S -1.000 *
85 A -1.000 *
86 S -1.000 *
87 S -1.000 *
88 T -1.000 *
89 S -1.000 *
90 S -1.000 *
91 S -1.000 *
92 S -1.000 *
93 A -1.000 *
94 T -1.000 *
95 S -1.000 *
96 P -1.000 *
97 A -1.000 *
98 S -1.000 *
99 A -1.000 *
100 S -1.000 *
101 F -1.000 *
102 K -1.000 *
103 F -1.000 *
104 E -1.000 *
105 D -1.000 *
106 F -1.000 *
107 Q -1.000 *
108 V -1.000 *
109 Y -1.000 *
110 G -1.000 *
111 C -1.000 *
112 Y -1.000 *
113 P -1.000 *
114 G -1.000 *
115 P -1.000 *
116 L -1.000 *
117 S -1.000 *
118 G -0.497
119 P -0.438
120 V -1.000 *
121 D -0.741
122 E -1.000 *
123 A -0.836
124 L -0.866
125 S -0.736
126 S -0.663
127 S -0.792
128 G -0.841
129 S -0.869
130 D -0.848
131 Y -0.945
132 Y -0.927
133 G -0.975
134 S -0.901
135 P -0.486
136 C -0.850
137 S -0.764
138 A -0.861
139 P -0.803
140 S -0.845
141 P -0.481
142 S -0.905
143 T -0.840
144 P -0.833
145 S -0.609
146 F -0.955
147 Q -0.600
148 P -0.690
149 P -0.793
150 Q -0.781
151 L -0.897
152 S -0.695
153 P -0.948
154 W -1.042
155 D -0.998
156 G -1.056
157 S -1.061
158 F -1.019
159 G -0.845
160 H -0.955
161 F -0.987
162 S -0.843
163 P -0.968
164 S -0.895
165 Q -1.009
166 T -0.988
167 Y -1.068
168 E -1.082
169 G -0.992
170 L -0.869
171 R -1.084
172 A -1.028
173 W -1.026
174 T -1.013
175 E -1.011
176 Q -1.058
177 L -0.959
178 P -1.091
179 K -1.022
180 A -1.059
181 S -1.075
182 G -0.877
183 P -1.022
184 P -1.077
185 Q -0.955
186 P -1.041
187 P -0.966
188 A -0.990
189 F -1.027
190 F -1.090
191 S -1.078
192 F -1.120
193 S -0.988
194 P -0.760
195 P -1.094
196 T -0.912
197 G -1.129
198 P -1.090
199 S -1.006
200 P -1.053
201 S -1.088
202 L -1.054
203 A -1.072
204 Q -0.952
205 S -0.942
206 P -0.726
207 L -0.943
208 K -1.095
209 L -1.058
210 F -1.081
211 P -1.036
212 S -0.941
213 Q -1.047
214 A -1.040
215 T -1.056
216 H -1.115
217 Q -1.053
218 L -1.090
219 G -1.042
220 E -1.106
221 G -0.834
222 E -0.913
223 S -1.013
224 Y -1.080
225 S -0.956
226 M -1.016
227 P -0.967
228 T -1.093
229 A -1.080
230 F -1.143
231 P -0.916
232 G -1.024
233 L -1.010
234 A -0.983
235 P -1.032
236 T -1.018
237 S -0.907
238 P -1.048
239 H -1.071
240 L -0.987
241 E -1.017
242 G -0.920
243 S -0.971
244 G -1.064
245 I -1.082
246 L -1.038
247 D -1.017
248 T -1.064
249 P -0.849
250 V -0.984
251 T -0.896
252 S -0.964
253 T -1.047
254 K -0.979
255 A -0.956
256 R -0.879
257 S -1.014
258 G -0.790
259 A -0.839
260 P -0.770
261 G -0.713
262 G -0.716
263 S -0.584
264 E -0.638
265 G -0.533
266 R -0.762
267 C 0.573
268 A -0.535
269 V 0.719
270 C 0.814
271 G 1.036
272 D 0.708
273 N -0.408
274 A 1.154
275 S 0.132
276 C 0.802
277 Q 0.359
278 H 0.834
279 Y 0.576
280 G 0.824
281 V 1.461
282 R 0.012
283 T 0.605
284 C 0.952
285 E 1.035
286 G 1.109
287 C 1.674
288 K 1.012
289 G 0.626
290 F 0.969
291 F 1.375
292 K 1.139
293 R 2.176
294 T 2.166
295 V 1.842
296 Q 1.459
297 K 1.502
298 N 0.511
299 A 0.466
300 K -0.400
301 Y 2.019
302 I 0.155
303 C 2.526
304 L 0.581
305 A -0.029
306 N 0.049
307 K 0.943
308 D -0.148
309 C 2.083
310 P -0.140
311 V 1.438
312 D 1.237
313 K 1.929
314 R 1.113
315 R 1.102
316 R 1.988
317 N 1.506
318 R 1.399
319 C 2.405
320 Q 2.249
321 F 1.570
322 C 2.397
323 R 3.414
324 F 1.499
325 Q 0.706
326 K 1.265
327 C 1.780
328 L 1.237
329 A -0.381
330 V 0.478
331 G 2.392
332 M 2.146
333 V 0.193
334 K 1.814
335 E 1.378
336 V 0.101
337 V 0.106
338 R -0.279
339 T -0.575
340 D -0.551
341 S -0.277
342 L -0.569
343 K 0.349
344 G -0.185
345 R -0.086
346 R -0.064
347 G -0.374
348 R 0.135
349 L -0.780
350 P -0.429
351 S -0.704
352 K -0.646
353 P -0.908
354 K -0.428
355 Q -0.941
356 P -0.736
357 P -0.809
358 D -0.832
359 A -0.783
360 S -0.901
361 P -0.417
362 A -0.739
363 N -0.611
364 L -0.426
365 L -0.271
366 T -0.431
367 S -0.519
368 L -0.156
369 V -0.337
370 R -0.582
371 A -0.519
372 H -0.306
373 L -0.784
374 D -0.668
375 S -0.109
376 G -0.744
377 P -0.084
378 S -0.913
379 T -0.813
380 A -0.893
381 K -0.910
382 L -0.659
383 D -0.489
384 Y -0.981
385 S -0.415
386 K -0.959
387 F -0.893
388 Q -1.067
389 E -0.688
390 L -0.957
391 V -0.806
392 L -0.944
393 P -0.948
394 H -1.060
395 F -0.964
396 G -0.606
397 K -0.888
398 E -0.710
399 D -0.358
400 A -0.576
401 G -0.634
402 D -0.825
403 V 0.280
404 Q -0.522
405 Q -0.177
406 F 1.340
407 Y 0.116
408 D -0.404
409 L 0.770
410 L 0.574
411 S -0.190
412 G -0.626
413 S 0.695
414 L 0.850
415 E -0.449
416 V -0.194
417 I 0.819
418 R 0.117
419 K -0.743
420 W 2.103
421 A 1.253
422 E 0.282
423 K -0.267
424 I 1.556
425 P 2.772
426 G 1.044
427 F 1.929
428 A -0.589
429 E 0.090
430 L 2.017
431 S -0.388
432 P -0.614
433 A -0.259
434 D 2.526
435 Q 2.522
436 D 0.037
437 L 0.211
438 L 2.516
439 L 0.670
440 E -0.031
441 S 1.189
442 A 0.910
443 F 0.126
444 L 0.768
445 E 1.979
446 L 1.099
447 F 0.839
448 I 0.709
449 L 0.774
450 R 0.899
451 L 0.752
452 A 0.922
453 Y 0.082
454 R 1.286
455 S 0.334
456 K -0.446
457 P -0.503
458 G -0.702
459 E -0.176
460 G -0.427
461 K -0.007
462 L 0.547
463 I 0.809
464 F 1.766
465 C 0.648
466 S 0.215
467 G 1.316
468 L -0.453
469 V 0.619
470 L 0.519
471 H 0.374
472 R 0.332
473 L -0.640
474 Q 0.626
475 C 0.655
476 A -0.516
477 R -0.125
478 G 0.310
479 F 0.686
480 G 1.029
481 D 0.421
482 W 1.864
483 I 0.323
484 D 0.195
485 S -0.298
486 I 1.833
487 L -0.078
488 A 0.347
489 F 1.975
490 S 1.112
491 R -0.822
492 S -0.253
493 L 0.905
494 H 0.355
495 S -0.738
496 L 1.636
497 L -0.291
498 V 1.286
499 D 1.489
500 V -0.126
501 P 0.639
502 A 0.803
503 F 0.836
504 A 1.068
505 C 1.870
506 L 2.001
507 S 0.277
508 A 1.418
509 L 1.165
510 V 0.743
511 L 1.176
512 I 0.566
513 T 1.051
514 D 0.274
515 R 0.341
516 H -0.146
517 G 0.734
518 L 1.384
519 Q 0.131
520 E -0.155
521 P -0.340
522 R -0.770
523 R -0.343
524 V 0.759
525 E 0.192
526 E -0.735
527 L 1.217
528 Q 0.896
529 N 0.019
530 R -0.164
531 I 1.306
532 A 0.095
533 S -0.151
534 C 0.452
535 L 2.076
536 K 0.037
537 E -0.174
538 H 0.377
539 V -0.107
540 A -0.521
541 A -0.932
542 V -0.486
543 A -0.759
544 G -0.836
545 E -0.745
546 P -0.719
547 Q -0.739
548 P -0.342
549 A -0.278
550 S -0.469
551 C -0.709
552 L 0.282
553 S 0.693
554 R 0.216
555 L 0.838
556 L 1.320
557 G -0.333
558 K 0.215
559 L 1.334
560 P 0.624
561 E 0.404
562 L 1.917
563 R 2.454
564 T 0.289
565 L 0.900
566 C 0.841
567 T 0.194
568 Q 0.655
569 G 1.811
570 L 0.357
571 Q 1.307
572 R 1.681
573 I 0.954
574 F 0.524
575 Y 0.120
576 L 1.054
577 K 1.954
578 L 0.487
579 E 0.114
580 D 0.681
581 L -0.176
582 V 0.174
583 P 0.789
584 P 0.311
585 P 1.417
586 P -0.215
587 I 0.032
588 I 1.227
589 D -0.200
590 K -0.003
591 I 1.116
592 F 1.692
593 M -0.345
594 D 0.219
595 T -0.155
596 L 1.521
597 P 2.014
598 F 2.375
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 345.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MPCIQAQYGT PAPSPGPRDH LASDPLTPEF IKPTMDLASP EAAPAAPTAL PSFSTFMDGY
70 80 90 100 110 120
TGEFDTFLYQ LPGTVQPCSS ASSSASSTSS SSATSPASAS FKFEDFQVYG CYPGPLSGPV
130 140 150 160 170 180
DEALSSSGSD YYGSPCSAPS PSTPSFQPPQ LSPWDGSFGH FSPSQTYEGL RAWTEQLPKA
190 200 210 220 230 240
SGPPQPPAFF SFSPPTGPSP SLAQSPLKLF PSQATHQLGE GESYSMPTAF PGLAPTSPHL
250 260 270 280 290 300
EGSGILDTPV TSTKARSGAP GGSEGRCAVC GDNASCQHYG VRTCEGCKGF FKRTVQKNAK
310 320 330 340 350 360
YICLANKDCP VDKRRRNRCQ FCRFQKCLAV GMVKEVVRTD SLKGRRGRLP SKPKQPPDAS
370 380 390 400 410 420
PANLLTSLVR AHLDSGPSTA KLDYSKFQEL VLPHFGKEDA GDVQQFYDLL SGSLEVIRKW
430 440 450 460 470 480
AEKIPGFAEL SPADQDLLLE SAFLELFILR LAYRSKPGEG KLIFCSGLVL HRLQCARGFG
490 500 510 520 530 540
DWIDSILAFS RSLHSLLVDV PAFACLSALV LITDRHGLQE PRRVEELQNR IASCLKEHVA
550 560 570 580 590
AVAGEPQPAS CLSRLLGKLP ELRTLCTQGL QRIFYLKLED LVPPPPIIDK IFMDTLPF
2QW4 (X-Ray,2.8 Å resolution)
NR4A1 is an orphan nuclear receptor which regulates diverse cellular pathways such as inflammation and differentiation. Katagiri et al. showed that nerve growth factor phosphorylates NR4A1 and induces its nuclear exit which is LMB sensitive. They also identified two putative NLSs in the N-terminal region and three putative NESs in the ligand binding domain (residues 443-452, 502-511 and 555-565). Fragment containing NES2 454-521 showed the strongest export activity amongst different tested. Mutations to the putative NESs separately and together all appear to affect nuclear export of full-length protein. S140 phosphorylation and phosphomimic is sufficient to induce nuclear export. Various papers showed LMB dependency of NR4A1 nuclear export induced by different stimuli, as well as, the need of phosphorylation for NR4A1 nuclear export. Papac-Milicevic et al. showed that NR4A1 can be co-immunoprecipitated with CRM1, partially dependent on presence of ISG12. However, it should be noted that all of the 3 putative NESs are not solvent exposed in the folded structure of ligand binding domain and would require unfolding or dramatic reorganization to be accessible for CRM1. Note: residue numbers in this comment is adjusted to match this uniport canonical isoform.
Ref.1The interferon stimulated gene 12 inactivates vasculoprotective functions of NR4A nuclear receptors, Papac et al., Circ Res., 2012 Ref.2Modulation of retinoid signalling through NGF-induced nuclear export of NGFI-B., Katagiri et al., Nat Cell Biol, 2000
[1]. "The interferon stimulated gene 12 inactivates vasculoprotective functions of NR4A nuclear receptors"
Papac-Milicevic N, Breuss JM, Zaujec J, Ryban L, Plyushch T, Wagner GA, Fenzl S, Dremsek P, Cabaravdic M, Steiner M, Glass CK, Binder CJ, Uhrin P, Binder BR. (2012)
Circ Res.,
110(8):e50-63
PubMed[2]. "Modulation of retinoid signalling through NGF-induced nuclear export of NGFI-B."
Katagiri Y, Takeda K, Yu ZX, Ferrans VJ, Ozato K, Guroff G. (2000)
Nat Cell Biol,
2(7):435-440
PubMed[3]. "TGFbeta-Induced Lung Cancer Cell Migration Is NR4A1-Dependent"
Hedrick E, Mohankumar K, Safe S. (2018)
Mol Cancer Res,
16(12):1991-2002
PubMed[4]. "Bile Acids Regulate Nuclear Receptor (Nur77) Expression and Intracellular Location to Control Proliferation and Apoptosis"
Hu Y, Chau T, Liu HX, Liao D, Keane R, Nie Y, Yang H, Wan YJ. (2015)
Mol Cancer Res,
13(2):281-292
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.