NESdb

HAUS augmin-like complex subunit 1 UniProt

LOC495502 protein

Xenopus laevis (African clawed frog)

LMB Sensitive, Binds CRM1 ^{Ref.1A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning, Kirli et al., eLife, 2015}

Unknown

Undetermined

Unknown

Show FASTA Format

>tr|Q3B8L5|Q3B8L5_XENLA LOC495502 protein (Fragment) OS=Xenopus laevis OX=8355 GN=LOC495502 PE=2 SV=1
SMDEKSTKIIMWLKKMFGDKPLPPYEVNTRTMEILYQLAEWNEARDKDLSLVTEDLKLKS
AEVKAEAKYLQDLLTEGLGPSYTNLSRMGNNYLNQIVDSCLALELKNSSLSSYIPAVNDL
SSELVAIELNNQEMEAELTSLRKKLTEALVLEKSLEQDLKKAEEQCNFEKAKVEIRSQNM
KKLKDKSEEYKYKIHAAKDQLSSAGMEEPLTHRSLVSLSETLTELKAQSMAAKEKLNSYL
DLAPNPSLVKVKIEEAKRELKATEVELTTKVNMMEFVVPEPSKRRLK

Show Domain Info by CDD

Show Secondary Structure by PSIPRED

    	# PSIPRED HFORMAT (PSIPRED V3.2)

Conf: 934789999999975619999998756968999999999994521133432478888789
Pred: CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
  AA: SMDEKSTKIIMWLKKMFGDKPLPPYEVNTRTMEILYQLAEWNEARDKDLSLVTEDLKLKS
              10        20        30        40        50        60


Conf: 998898878688865321999777894478879999987544046789824328889664
Pred: HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
  AA: AEVKAEAKYLQDLLTEGLGPSYTNLSRMGNNYLNQIVDSCLALELKNSSLSSYIPAVNDL
              70        80        90       100       110       120


Conf: 367999786439999999999999999999999999999999865555468999887301
Pred: HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
  AA: SSELVAIELNNQEMEAELTSLRKKLTEALVLEKSLEQDLKKAEEQCNFEKAKVEIRSQNM
             130       140       150       160       170       180


Conf: 789989999999999999999754999986436777433989999997499999872510
Pred: HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
  AA: KKLKDKSEEYKYKIHAAKDQLSSAGMEEPLTHRSLVSLSETLTELKAQSMAAKEKLNSYL
             190       200       210       220       230       240


Conf: 99999577756689999999999999962232210235786567889
Pred: CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
  AA: DLAPNPSLVKVKIEEAKRELKATEVELTTKVNMMEFVVPEPSKRRLK
             250       260       270       280

Show Conservation Score by AL2CO

1     S      -1.000    *
2     M      -1.000    *
3     D      -1.000    *
4     E      -1.000    *
5     K       1.268
6     S      -0.635
7     T      -0.649
8     K       0.177
9     I       3.083
10    I      -0.957
11    M      -0.616
12    W       5.241
13    L       3.789
14    K      -0.485
15    K      -0.356
16    M       0.074
17    F       1.795
18    G      -0.313
19    D      -0.050
20    K      -0.267
21    P      -0.325
22    L       1.216
23    P       2.786
24    P      -0.821
25    Y       1.745
26    E       2.680
27    V       0.446
28    N       2.817
29    T       0.058
30    R      -0.330
31    T       1.284
32    M       1.217
33    E      -0.088
34    I       0.158
35    L       3.818
36    Y      -0.306
37    Q      -0.308
38    L       1.252
39    A       0.138
40    E      -0.390
41    W      -0.934
42    N       1.208
43    E       0.514
44    A      -0.288
45    R      -0.171
46    D       0.749
47    K       0.152
48    D       0.016
49    L      -0.517
50    S      -0.968
51    L       0.431
52    V       0.479
53    T       0.008
54    E       0.181
55    D      -0.014
56    L      -0.458
57    K      -0.034
58    L       0.038
59    K      -0.073
60    S       0.105
61    A      -0.352
62    E      -0.071
63    V      -0.648
64    K      -0.256
65    A      -0.348
66    E      -0.126
67    A      -0.388
68    K      -0.691
69    Y      -0.739
70    L      -1.046
71    Q      -0.082
72    D      -0.196
73    L       0.022
74    L      -0.591
75    T      -1.040
76    E       0.158
77    G      -1.004
78    L       0.361
79    G      -0.276
80    P      -0.320
81    S      -0.655
82    Y      -1.027
83    T      -0.643
84    N      -0.502
85    L       1.349
86    S       0.400
87    R      -0.637
88    M      -0.576
89    G       0.746
90    N      -0.918
91    N      -0.933
92    Y      -0.643
93    L       1.115
94    N      -0.376
95    Q      -0.264
96    I       2.378
97    V       0.683
98    D      -0.458
99    S       0.402
100   C       0.975
101   L      -0.818
102   A      -0.434
103   L       2.737
104   E      -0.021
105   L      -0.381
106   K      -0.291
107   N      -0.542
108   S      -0.328
109   S      -0.023
110   L      -0.391
111   S      -0.668
112   S      -0.314
113   Y       0.589
114   I      -0.765
115   P      -0.847
116   A       0.308
117   V       0.807
118   N      -0.696
119   D      -0.311
120   L       0.446
121   S      -0.322
122   S      -0.882
123   E       0.022
124   L      -0.662
125   V      -0.986
126   A      -0.611
127   I       0.075
128   E      -0.384
129   L      -0.473
130   N      -0.399
131   N      -0.790
132   Q      -0.757
133   E      -0.225
134   M      -0.071
135   E      -0.699
136   A      -1.070
137   E      -0.529
138   L      -0.238
139   T      -0.882
140   S      -1.197
141   L       0.909
142   R      -0.711
143   K      -0.063
144   K      -0.264
145   L      -0.263
146   T      -0.401
147   E      -0.552
148   A      -0.147
149   L      -0.563
150   V      -0.748
151   L      -0.557
152   E      -0.566
153   K      -0.626
154   S      -0.971
155   L       0.712
156   E      -0.415
157   Q      -0.169
158   D      -0.752
159   L      -0.481
160   K      -1.039
161   K      -0.374
162   A      -0.672
163   E      -0.912
164   E      -1.081
165   Q      -1.205
166   C      -0.950
167   N      -0.874
168   F      -1.207
169   E      -0.802
170   K      -1.001
171   A      -0.566
172   K      -0.620
173   V      -0.167
174   E      -0.250
175   I      -0.959
176   R       0.112
177   S      -0.875
178   Q      -0.170
179   N       0.031
180   M       0.292
181   K      -0.412
182   K      -0.087
183   L       1.123
184   K      -0.739
185   D      -0.646
186   K       2.423
187   S      -0.645
188   E      -0.554
189   E       0.501
190   Y       1.419
191   K      -0.641
192   Y      -1.172
193   K       0.024
194   I      -0.308
195   H      -0.669
196   A      -0.845
197   A      -0.259
198   K       0.196
199   D      -0.549
200   Q      -0.718
201   L      -0.365
202   S      -0.737
203   S      -0.475
204   A      -0.384
205   G      -0.676
206   M      -1.129
207   E      -0.685
208   E      -0.824
209   P      -0.512
210   L       0.011
211   T      -0.753
212   H      -0.101
213   R      -0.454
214   S      -0.536
215   L       1.545
216   V      -0.627
217   S      -0.436
218   L      -0.333
219   S      -0.321
220   E       0.536
221   T      -0.396
222   L      -0.312
223   T      -0.762
224   E      -0.412
225   L       0.407
226   K      -0.185
227   A      -0.111
228   Q      -0.350
229   S       0.281
230   M      -0.748
231   A      -0.739
232   A       0.901
233   K       0.003
234   E      -0.727
235   K       0.095
236   L       1.384
237   N       0.130
238   S      -0.843
239   Y       3.055
240   L      -0.488
241   D       0.137
242   L       3.758
243   A       2.193
244   P       0.411
245   N       2.004
246   P      -0.057
247   S      -0.880
248   L       0.413
249   V       2.481
250   K       0.262
251   V       0.064
252   K       0.833
253   I       1.504
254   E      -0.017
255   E       0.069
256   A       0.848
257   K       1.216
258   R      -0.463
259   E       1.637
260   L       2.016
261   K      -0.437
262   A      -0.538
263   T       1.271
264   E       0.864
265   V      -0.262
266   E       0.349
267   L       2.284
268   T      -0.491
269   T      -0.636
270   K      -0.149
271   V       0.641
272   N       0.788
273   M      -0.889
274   M      -1.000    *
275   E      -1.000    *
276   F      -1.000    *
277   V      -1.000    *
278   V      -1.000    *
279   P      -1.000    *
280   E      -1.000    *
281   P      -1.000    *
282   S      -1.000    *
283   K      -1.000    *
284   R      -1.000    *
285   R      -1.000    *
286   L      -1.000    *
287   K      -1.000    *
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - 358.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50

        10         20         30         40         50         60 SMDEKSTKII MWLKKMFGDK PLPPYEVNTR TMEILYQLAE WNEARDKDLS LVTEDLKLKS 
        70         80         90        100        110        120 AEVKAEAKYL QDLLTEGLGP SYTNLSRMGN NYLNQIVDSC LALELKNSSL SSYIPAVNDL 
       130        140        150        160        170        180 SSELVAIELN NQEMEAELTS LRKKLTEALV LEKSLEQDLK KAEEQCNFEK AKVEIRSQNM 
       190        200        210        220        230        240 KKLKDKSEEY KYKIHAAKDQ LSSAGMEEPL THRSLVSLSE TLTELKAQSM AAKEKLNSYL 
       250        260        270        280                       DLAPNPSLVK VKIEEAKREL KATEVELTTK VNMMEFVVPE PSKRRLK

Not Available

Xenopus Haus1 is a protein involved in cytokinesis and is identified in proteomics study by Kirli et al. as a CRM1 binder. Export activity is verified as GFP- and GFP-NLS-fusions in an LMB-sensitive manner. Purified protein can bind to mouse CRM1 in RanGTP-dependent manner. No putative NES has been tested yet. ^{Ref.1A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning, Kirli et al., eLife, 2015}

[1]. "A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning"
Kırlı K, Karaca S, Dehne HJ, Samwer M, Pan KT, Lenz C, Urlaub H, Görlich D. (2015) eLife, 4:e11466 PubMed

Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus. Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.

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