Show FASTA Format
>sp|P49591|SYSC_HUMAN Serine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=SARS1 PE=1 SV=3
MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE
RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF
EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL
SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYH
IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV
EFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQEP
SKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDA
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 955300122305999468889876309990569999984323445221222324577665
Pred: CCCCCCHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLC
10 20 30 40 50 60
Conf: 456765644089999889864223343210089984345778989998889998753799
Pred: HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: SKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAE
70 80 90 100 110 120
Conf: 999999999767340373488765889978998079874388645666820020020375
Pred: HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHEEHHCCC
AA: RIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGF
130 140 150 160 170 180
Conf: 677886561475112112278798999999999875089987899511228899983300
Pred: CCCCCCEEECCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
AA: EGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQL
190 200 210 220 230 240
Conf: 252100011314787778999877624563166210012347888999997322454123
Pred: CCCCCHHHEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
AA: SQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC
250 260 270 280 290 300
Conf: 342105878875200000143320125512899985489999999949999987099707
Pred: HHHHHCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
AA: FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYH
310 320 330 340 350 360
Conf: 999704532102210566545579997511302047883121013301006556788633
Pred: EEEEECCCCCCHHHCCCCCCCCCCCCCCCCCEECCCCCCHHHHCCCEEEECCCCCCCCCC
AA: IVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKV
370 380 390 400 410 420
Conf: 334313102447653633221044389973147001012899995212467789999862
Pred: CEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: EFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQEP
430 440 450 460 470 480
Conf: 1233210137743112221108874013543469
Pred: CHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCC
AA: SKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDA
490 500 510
Show Conservation Score by AL2CO
1 M -1.000 *
2 V 0.344
3 L 0.825
4 D 0.818
5 L -0.178
6 D -1.040
7 L -1.234
8 F 0.174
9 R 0.411
10 V -0.917
11 D -0.553
12 K -0.621
13 G -0.390
14 G -0.564
15 D -0.671
16 P -0.254
17 A -0.431
18 L -1.069
19 I 0.671
20 R -0.357
21 E -0.761
22 T -0.924
23 Q 0.026
24 E -0.782
25 K -0.990
26 R 1.884
27 F -0.407
28 K -1.075
29 D -0.771
30 P -0.858
31 G -0.793
32 L -1.117
33 V 0.440
34 D -0.437
35 Q -0.986
36 L 0.151
37 V -0.883
38 K -1.006
39 A -1.289
40 D 0.385
41 S -0.963
42 E -1.143
43 W -0.374
44 R 0.072
45 R -0.899
46 C -1.248
47 R -0.982
48 F -1.074
49 R -1.160
50 A -0.932
51 D -0.206
52 N -1.159
53 L -1.162
54 N -0.084
55 K -0.742
56 L -1.082
57 K -1.054
58 N 0.157
59 L -1.128
60 C -0.817
61 S -0.152
62 K -0.516
63 T -0.984
64 I 0.308
65 G -0.137
66 E -1.152
67 K -0.704
68 M -0.317
69 K -0.618
70 K -0.826
71 K 0.042
72 E -0.668
73 P -0.720
74 V -1.065
75 G -0.802
76 D -0.964
77 D -1.000 *
78 E -1.000 *
79 S -1.000 *
80 V -1.000 *
81 P -1.000 *
82 E -1.000 *
83 N -1.000 *
84 V -1.000 *
85 L -1.000 *
86 S -1.000 *
87 F -1.000 *
88 D -1.000 *
89 D -1.000 *
90 L -1.000 *
91 T -1.000 *
92 A -1.000 *
93 D -1.000 *
94 A -1.000 *
95 L -1.000 *
96 A -1.000 *
97 N -1.000 *
98 L -1.000 *
99 K -0.902
100 V -0.900
101 S -1.186
102 Q -1.000
103 I -0.904
104 K -0.879
105 K -0.945
106 V -1.030
107 R -0.991
108 L -1.151
109 L -1.349
110 I -0.876
111 D -0.669
112 E -0.915
113 A -1.155
114 I -0.978
115 L -0.985
116 K -0.958
117 C -1.157
118 D -0.883
119 A -1.036
120 E -1.177
121 R -0.889
122 I -1.009
123 K -0.930
124 L -1.000
125 E -1.116
126 A -1.309
127 E -1.102
128 R -0.527
129 F -1.119
130 E -1.322
131 N -1.203
132 L -0.326
133 R -1.402
134 E -1.189
135 I 0.602
136 G 0.831
137 N 2.484
138 L -0.738
139 L 0.271
140 H -0.063
141 P -0.703
142 S 0.163
143 V 0.640
144 P 0.093
145 I -0.293
146 S -0.343
147 N -1.001
148 D 0.107
149 E 0.848
150 D 0.153
151 V -1.000 *
152 D 0.348
153 N -0.237
154 K -0.924
155 V -0.182
156 E -0.887
157 R -0.904
158 I -1.091
159 W -0.800
160 G -1.187
161 D -0.856
162 C -1.244
163 T -0.997
164 V -1.438
165 R -0.906
166 K -0.870
167 K -1.413
168 Y -0.718
169 S -0.644
170 H 1.931
171 V -0.204
172 D 0.205
173 L 0.633
174 V -0.076
175 V -1.390
176 M -1.200
177 V 0.540
178 D -0.232
179 G -0.054
180 F -0.117
181 E 0.631
182 G -1.037
183 E -0.740
184 K -0.038
185 G 0.992
186 A -0.373
187 V -1.024
188 V 0.110
189 A 0.433
190 G 0.987
191 S 0.143
192 R 2.036
193 G 0.287
194 Y -0.327
195 F 0.318
196 L 0.375
197 K -0.504
198 G -0.471
199 V -1.300
200 L 0.241
201 V -0.128
202 F -0.896
203 L 1.143
204 E 0.082
205 Q -0.355
206 A 1.159
207 L 0.588
208 I -0.462
209 Q -0.429
210 Y -0.075
211 A 0.418
212 L 0.107
213 R -0.752
214 T -1.026
215 L 0.037
216 G -1.414
217 S -0.880
218 R -0.661
219 G -0.277
220 Y 0.768
221 I -1.044
222 P -0.822
223 I -0.142
224 Y -0.989
225 T 0.435
226 P 1.983
227 F -0.424
228 F 0.140
229 M 0.536
230 R -0.699
231 K -0.331
232 E -0.632
233 V -0.761
234 M 0.865
235 Q -0.978
236 E -0.101
237 V 0.836
238 A 0.952
239 Q 1.171
240 L 1.138
241 S -0.132
242 Q 0.310
243 F 2.015
244 D -0.126
245 E 0.135
246 E 0.006
247 L 0.160
248 Y 1.581
249 K -0.441
250 V 0.346
251 I -1.147
252 G -0.489
253 K -0.687
254 G -0.726
255 S -0.647
256 E -1.000 *
257 K -1.000 *
258 S -1.000 *
259 D -1.000 *
260 D -1.000 *
261 N -1.000 *
262 S -1.000 *
263 Y -1.000 *
264 D -1.087
265 E 0.070
266 K 0.010
267 Y 0.645
268 L 1.761
269 I 1.336
270 A 1.279
271 T 2.484
272 S 1.550
273 E 2.484
274 Q 0.944
275 P 1.762
276 I 0.540
277 A 0.292
278 A 0.348
279 L -0.037
280 H 0.776
281 R -1.025
282 D -0.040
283 E -0.215
284 W -0.110
285 L 0.405
286 R -1.186
287 P -0.978
288 E -0.793
289 D -0.881
290 L 0.496
291 P 2.484
292 I -0.346
293 K -0.699
294 Y 0.567
295 A -0.361
296 G 1.228
297 L -0.394
298 S 1.679
299 T -0.032
300 C 1.228
301 F 1.644
302 R 2.035
303 Q 0.192
304 E 2.484
305 V 1.075
306 G 2.035
307 S 0.829
308 H 0.814
309 G 2.035
310 R 1.569
311 D 1.851
312 T 0.164
313 R 0.241
314 G 2.484
315 I 0.557
316 F 0.426
317 R 2.484
318 V 0.188
319 H 2.035
320 Q 1.064
321 F 2.035
322 E -0.032
323 K 2.035
324 I 1.146
325 E 2.484
326 Q 1.067
327 F 0.950
328 V -0.646
329 Y -0.061
330 S 0.217
331 S -0.827
332 P 1.269
333 H -0.782
334 D 0.015
335 N -1.000 *
336 K -0.900
337 S 2.484
338 W 0.269
339 E -0.805
340 M -0.747
341 F 0.340
342 E 0.274
343 E -0.974
344 M 1.564
345 I -0.221
346 T -1.023
347 T -0.864
348 A 1.284
349 E 0.586
350 E -0.975
351 F 0.453
352 Y -0.333
353 Q 0.271
354 S -0.987
355 L 1.815
356 G -0.074
357 I 1.158
358 P 0.723
359 Y 1.465
360 H 0.796
361 I 0.656
362 V 0.353
363 N -0.843
364 I 0.772
365 V 0.784
366 S 1.258
367 G 1.387
368 S 0.727
369 L 0.732
370 N 0.745
371 H -0.047
372 A 0.784
373 A 1.626
374 S 0.719
375 K 0.485
376 K 1.189
377 L -0.030
378 D 2.031
379 L 0.676
380 E 2.031
381 A 0.814
382 W 1.532
383 F -0.018
384 P 1.482
385 G -0.395
386 S -0.430
387 G -0.753
388 A -0.744
389 F 0.531
390 R 0.913
391 E 2.484
392 L 1.021
393 V 0.792
394 S 2.031
395 C 0.597
396 S 2.484
397 N 2.031
398 C 0.504
399 T -0.100
400 D 0.313
401 Y 1.281
402 Q 2.031
403 A 0.896
404 R 1.323
405 R -0.302
406 L 0.344
407 R -0.720
408 I 0.420
409 R 1.032
410 Y -0.099
411 G 0.484
412 Q -1.269
413 T -0.889
414 K -0.867
415 K -1.121
416 M -1.083
417 M -0.966
418 D -0.975
419 K -1.011
420 V -0.677
421 E -0.832
422 F 0.131
423 V 0.135
424 H 2.028
425 M 0.207
426 L 1.257
427 N 2.484
428 A 0.537
429 T 1.561
430 M 0.762
431 C -0.053
432 A 2.023
433 T 0.079
434 T 0.385
435 R 2.484
436 T 0.368
437 I 0.267
438 C 0.293
439 A 0.611
440 I 0.848
441 L 0.190
442 E 2.028
443 N 0.149
444 Y -0.062
445 Q 2.028
446 T -0.271
447 E -0.610
448 K -0.375
449 G 0.939
450 I 0.291
451 T -0.894
452 V 0.826
453 P 2.029
454 E -0.642
455 K -0.360
456 L 1.113
457 K -0.254
458 E -0.938
459 F 0.768
460 M 0.715
461 P -1.072
462 P -1.000 *
463 G -0.775
464 L -1.182
465 Q -1.152
466 E -0.834
467 L -0.810
468 I -0.877
469 P 0.189
470 F -0.093
471 V -0.730
472 K -0.670
473 P -0.779
474 A -1.037
475 P -0.256
476 I -0.805
477 E -0.910
478 Q -1.290
479 E -1.146
480 P -1.086
481 S -1.200
482 K -0.845
483 K -0.832
484 Q -1.000 *
485 K -1.000 *
486 K -1.000 *
487 Q -1.000 *
488 H -1.000 *
489 E -1.000 *
490 G -1.000 *
491 S -1.000 *
492 K -1.000 *
493 K -1.000 *
494 K -1.000 *
495 A -1.000 *
496 A -1.000 *
497 A -1.000 *
498 R -1.000 *
499 D -1.000 *
500 V -1.000 *
501 T -1.000 *
502 L -1.000 *
503 E -1.000 *
504 N -1.000 *
505 R -1.000 *
506 L -1.000 *
507 Q -1.000 *
508 N -1.000 *
509 M -1.000 *
510 E -1.000 *
511 V -1.000 *
512 T -1.000 *
513 D -1.000 *
514 A -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 367.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MVLDLDLFRV DKGGDPALIR ETQEKRFKDP GLVDQLVKAD SEWRRCRFRA DNLNKLKNLC
70 80 90 100 110 120
SKTIGEKMKK KEPVGDDESV PENVLSFDDL TADALANLKV SQIKKVRLLI DEAILKCDAE
130 140 150 160 170 180
RIKLEAERFE NLREIGNLLH PSVPISNDED VDNKVERIWG DCTVRKKYSH VDLVVMVDGF
190 200 210 220 230 240
EGEKGAVVAG SRGYFLKGVL VFLEQALIQY ALRTLGSRGY IPIYTPFFMR KEVMQEVAQL
250 260 270 280 290 300
SQFDEELYKV IGKGSEKSDD NSYDEKYLIA TSEQPIAALH RDEWLRPEDL PIKYAGLSTC
310 320 330 340 350 360
FRQEVGSHGR DTRGIFRVHQ FEKIEQFVYS SPHDNKSWEM FEEMITTAEE FYQSLGIPYH
370 380 390 400 410 420
IVNIVSGSLN HAASKKLDLE AWFPGSGAFR ELVSCSNCTD YQARRLRIRY GQTKKMMDKV
430 440 450 460 470 480
EFVHMLNATM CATTRTICAI LENYQTEKGI TVPEKLKEFM PPGLQELIPF VKPAPIEQEP
490 500 510
SKKQKKQHEG SKKKAAARDV TLENRLQNME VTDA
3VBB (X-Ray,2.89 Å resolution)
SYSC/SARS1 is the ligase that catalyzes the conjugation of serine to its tRNA. It is identified in proteomics study by Kirli et al. as a CRM1 binder. Export activity is verified as GFP- and GFP-NLS-fusions in an LMB-sensitive manner. No putative NES have been tested yet.
Ref.1A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning, Kirli et al., eLife, 2015
[1]. "A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning"
Kırlı K, Karaca S, Dehne HJ, Samwer M, Pan KT, Lenz C, Urlaub H, Görlich D. (2015)
eLife,
4:e11466
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.