Eukaryotic translation initiation factor 3 subunit J
UniProt
Show FASTA Format
>sp|Q05775|EIF3J_YEAST Eukaryotic translation initiation factor 3 subunit J OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HCR1 PE=1 SV=1
MSWDDEAINGSMGNDDAVLMDSWDAEIGDDEPVMQSWDAEEEEKKPAPKPKKEQPKKVKK
GKESSADRALLDIDTLDEKTRKELIKKAEMESDLNNAADLFAGLGVAEEHPRARALQKEQ
EEQALKRPAFTKDTPIETHPLFNAETKREYQDLRKALTAAITPMNKKSPLNYSSSLAIDL
IRDVAKPMSIESIRQTVATLNVLIKDKEREERQARLARVRGGTATGGAGKKKVKGKTNLG
GAFKKDQDFDLDGPDDFEFGDDDFM
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 998888888899997201017788654898866777754566889999999878300001
Pred: CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MSWDDEAINGSMGNDDAVLMDSWDAEIGDDEPVMQSWDAEEEEKKPAPKPKKEQPKKVKK
10 20 30 40 50 60
Conf: 311102232016885589999999999876331353997620358776644788766888
Pred: CCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
AA: GKESSADRALLDIDTLDEKTRKELIKKAEMESDLNNAADLFAGLGVAEEHPRARALQKEQ
70 80 90 100 110 120
Conf: 898740899878888999999899998899999999999770146779986345689999
Pred: HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
AA: EEQALKRPAFTKDTPIETHPLFNAETKREYQDLRKALTAAITPMNKKSPLNYSSSLAIDL
130 140 150 160 170 180
Conf: 999758999056999999988887646899999986255787666899876445655678
Pred: HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
AA: IRDVAKPMSIESIRQTVATLNVLIKDKEREERQARLARVRGGTATGGAGKKKVKGKTNLG
190 200 210 220 230 240
Conf: 7766776565799999999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCC
AA: GAFKKDQDFDLDGPDDFEFGDDDFM
250 260
Show Conservation Score by AL2CO
1 M -1.000 *
2 S -1.000 *
3 W 4.366
4 D 3.482
5 D 0.652
6 E 2.244
7 A 0.175
8 I -0.807
9 N -0.071
10 G -0.300
11 S -0.316
12 M -0.628
13 G -0.614
14 N -0.557
15 D -0.618
16 D -0.552
17 A -0.716
18 V -0.602
19 L -0.772
20 M -0.889
21 D -0.202
22 S -0.013
23 W 0.373
24 D 0.587
25 A 0.828
26 E 1.432
27 I 0.516
28 G 0.273
29 D 1.271
30 D 0.573
31 E 0.248
32 P 0.038
33 V 0.091
34 M -0.480
35 Q 0.559
36 S 0.759
37 W 1.091
38 D 1.169
39 A 0.053
40 E 0.284
41 E 0.273
42 E 0.242
43 E 0.058
44 K -0.300
45 K -0.179
46 P -0.369
47 A -0.404
48 P -0.233
49 K -0.304
50 P -0.674
51 K -0.541
52 K -0.373
53 E -0.700
54 Q -0.589
55 P -0.574
56 K -0.717
57 K -0.599
58 V -0.970
59 K -0.602
60 K -0.627
61 G -0.866
62 K -0.584
63 E -0.726
64 S -0.793
65 S -0.696
66 A -0.697
67 D -0.718
68 R -0.697
69 A -0.739
70 L -0.984
71 L -0.951
72 D -0.567
73 I -0.895
74 D -0.629
75 T -1.076
76 L -0.869
77 D -0.022
78 E -0.579
79 K -0.998
80 T -0.527
81 R -0.358
82 K 0.195
83 E 0.076
84 L -0.124
85 I -0.308
86 K 0.276
87 K 0.406
88 A -0.583
89 E 0.442
90 M -0.127
91 E -0.057
92 S 0.572
93 D 0.972
94 L 0.111
95 N -0.840
96 N -0.465
97 A 1.043
98 A -0.407
99 D 0.440
100 L 1.097
101 F 0.483
102 A 0.600
103 G -0.339
104 L -0.332
105 G -0.236
106 V -0.029
107 A -0.614
108 E -0.572
109 E -0.762
110 H -0.819
111 P -0.688
112 R -0.493
113 A -0.719
114 R -0.527
115 A -0.968
116 L -0.845
117 Q -0.804
118 K -0.856
119 E -0.811
120 Q -0.890
121 E -0.881
122 E -0.696
123 Q -0.872
124 A -0.869
125 L -1.080
126 K -0.788
127 R -0.946
128 P -0.950
129 A -0.716
130 F -0.957
131 T -0.605
132 K -0.765
133 D -0.416
134 T -0.809
135 P -0.361
136 I -0.167
137 E -0.101
138 T -0.567
139 H 0.363
140 P -0.720
141 L -0.295
142 F 0.136
143 N -0.690
144 A 1.593
145 E -0.655
146 T 0.940
147 K 1.292
148 R -0.527
149 E 1.962
150 Y 2.024
151 Q -0.310
152 D -0.262
153 L 1.697
154 R -0.064
155 K -0.310
156 A -0.531
157 L 1.995
158 T -0.712
159 A -0.683
160 A -0.731
161 I 1.530
162 T -0.696
163 P -0.448
164 M -0.768
165 N -0.740
166 K -0.613
167 K -0.646
168 S 0.104
169 P -0.276
170 L -0.317
171 N -0.277
172 Y 1.975
173 S -0.507
174 S -0.712
175 S -0.807
176 L 1.655
177 A -0.546
178 I -0.750
179 D -0.486
180 L 1.118
181 I -0.010
182 R 1.820
183 D -0.336
184 V 0.964
185 A 0.555
186 K -0.880
187 P 0.040
188 M 1.450
189 S -0.143
190 I -0.398
191 E -0.517
192 S 0.775
193 I 1.203
194 R 2.658
195 Q 1.190
196 T 0.832
197 V 0.297
198 A 0.618
199 T -0.145
200 L 1.885
201 N 0.904
202 V 0.106
203 L 0.628
204 I -0.523
205 K -0.171
206 D 1.521
207 K 3.869
208 E 0.626
209 R 2.414
210 E 0.130
211 E 0.926
212 R 1.618
213 Q -0.261
214 A -0.179
215 R -0.277
216 L 0.395
217 A 0.153
218 R 0.975
219 V 0.330
220 R -1.000 *
221 G -1.000 *
222 G -1.000 *
223 T -1.000 *
224 A -1.000 *
225 T -0.279
226 G 0.180
227 G -0.045
228 A -0.133
229 G -0.169
230 K 0.155
231 K -0.036
232 K -0.274
233 V -0.492
234 K 0.171
235 G -0.369
236 K -0.682
237 T -0.352
238 N -0.382
239 L -1.000 *
240 G -0.766
241 G -0.426
242 A -0.221
243 F -0.802
244 K -0.633
245 K -1.136
246 D -0.527
247 Q -1.027
248 D -1.217
249 F -0.796
250 D 0.225
251 L -0.715
252 D -0.795
253 G -0.800
254 P -0.614
255 D -0.402
256 D 0.545
257 F 0.151
258 E 0.011
259 F -0.495
260 G 0.147
261 D 0.029
262 D 2.095
263 D 3.719
264 F 4.705
265 M 4.385
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 371.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MSWDDEAING SMGNDDAVLM DSWDAEIGDD EPVMQSWDAE EEEKKPAPKP KKEQPKKVKK
70 80 90 100 110 120
GKESSADRAL LDIDTLDEKT RKELIKKAEM ESDLNNAADL FAGLGVAEEH PRARALQKEQ
130 140 150 160 170 180
EEQALKRPAF TKDTPIETHP LFNAETKREY QDLRKALTAA ITPMNKKSPL NYSSSLAIDL
190 200 210 220 230 240
IRDVAKPMSI ESIRQTVATL NVLIKDKERE ERQARLARVR GGTATGGAGK KKVKGKTNLG
250 260
GAFKKDQDFD LDGPDDFEFG DDDFM
eIF3j is a subunit of the eukaryotic translation initiation factor 3 (eIF-3) complex which functions in translation initiation of a subset of mRNAs by the 40S ribosome involved in cell proliferation. It is identified in proteomics study by Kirli et al. as a CRM1 binder. Export activity is verified as GFP- and GFP-NLS-fusions in an LMB-sensitive manner. No putative NES have been identified yet.
Ref.1A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning, Kirli et al., eLife, 2015
[1]. "A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning"
Kırlı K, Karaca S, Dehne HJ, Samwer M, Pan KT, Lenz C, Urlaub H, Görlich D. (2015)
eLife,
4:e11466
PubMed
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