Cytoplasmic 60S subunit biogenesis factor REI1
UniProt
Show FASTA Format
>sp|P38344|REI1_YEAST Cytoplasmic 60S subunit biogenesis factor REI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=REI1 PE=1 SV=3
MSSSGVYTCNSCVLTFDSSDEQRAHMKSDWHRYNLKRRVAQLPPISFETFDSKVSAAAAS
TSKSAEKEKPVTKKELKRREKQALLEKKKKLLEIARANMLENMQKSQEGNTPDLSKLSLQ
ENEENKEKEEPKKEEPEQLTEEEMAERVMQEKLRNRVDIPLEQCLFCEHNKHFKDVEENL
EHMFRTHGFYIPEQKYLVDKIGLVKYMSEKIGLGNICIVCNYQGRTLTAVRQHMLAKRHC
KIPYESEDERLEISEFYDFTSSYANFNSNTTPDNEDDWEDVGSDEAGSDDEDLPQEYLYN
DGIELHLPTGIKVGHRSLQRYYKQDLKPEVILTEGQGTLVAAETRSFLPAFDKKGVQTQQ
RVWQTERFDKKRLDKRSAKFVNNQPHYRDQLLQ
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 988874323220110599278875317102357787765189999999999999999980
Pred: CCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
AA: MSSSGVYTCNSCVLTFDSSDEQRAHMKSDWHRYNLKRRVAQLPPISFETFDSKVSAAAAS
10 20 30 40 50 60
Conf: 352224557740235447768789851101799998634442101458999988655212
Pred: CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
AA: TSKSAEKEKPVTKKELKRREKQALLEKKKKLLEIARANMLENMQKSQEGNTPDLSKLSLQ
70 80 90 100 110 120
Conf: 244443578998889876654789886867863069999999610268999999999899
Pred: CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
AA: ENEENKEKEEPKKEEPEQLTEEEMAERVMQEKLRNRVDIPLEQCLFCEHNKHFKDVEENL
130 140 150 160 170 180
Conf: 952301443138977667956799999999606995575499999999999975028984
Pred: HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCCC
AA: EHMFRTHGFYIPEQKYLVDKIGLVKYMSEKIGLGNICIVCNYQGRTLTAVRQHMLAKRHC
190 200 210 220 230 240
Conf: 667999567676320157888887989999999999987778888899999887520027
Pred: CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: KIPYESEDERLEISEFYDFTSSYANFNSNTTPDNEDDWEDVGSDEAGSDDEDLPQEYLYN
250 260 270 280 290 300
Conf: 973787488671320201344301799953333443226888531047667889899988
Pred: CCEEEECCCCCEEEECCHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHH
AA: DGIELHLPTGIKVGHRSLQRYYKQDLKPEVILTEGQGTLVAAETRSFLPAFDKKGVQTQQ
310 320 330 340 350 360
Conf: 999999999999999863271999899867899
Pred: HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
AA: RVWQTERFDKKRLDKRSAKFVNNQPHYRDQLLQ
370 380 390
Show Conservation Score by AL2CO
1 M -1.000 *
2 S -1.000 *
3 S 0.100
4 S -0.207
5 G -0.177
6 V -0.436
7 Y 1.482
8 T 1.651
9 C 3.250
10 N 0.478
11 S 0.691
12 C 3.250
13 V -0.606
14 L 0.308
15 T -0.217
16 F 1.529
17 D -0.770
18 S -0.038
19 S -0.330
20 D -0.210
21 E -0.325
22 Q 1.266
23 R 1.101
24 A -0.549
25 H 2.872
26 M 1.083
27 K 0.477
28 S 0.424
29 D 1.589
30 W 1.145
31 H 3.250
32 R 0.845
33 Y 1.961
34 N 3.250
35 L 1.129
36 K 1.516
37 R 2.877
38 R 1.489
39 V 1.000
40 A 0.811
41 Q 0.051
42 L 0.562
43 P 0.072
44 P 0.663
45 I 0.882
46 S 0.077
47 F -0.238
48 E -0.295
49 T -0.402
50 F 1.619
51 D -0.276
52 S -0.171
53 K 1.062
54 V -0.011
55 S -0.559
56 A -0.555
57 A -0.641
58 A -0.516
59 A -0.652
60 S -0.517
61 T -0.534
62 S -0.531
63 K -0.579
64 S -0.867
65 A -0.632
66 E -0.720
67 K -0.738
68 E -0.671
69 K -0.861
70 P -0.844
71 V -0.838
72 T -0.844
73 K -0.786
74 K -0.761
75 E -0.799
76 L -0.763
77 K -0.379
78 R -0.654
79 R -0.723
80 E -0.728
81 K -0.626
82 Q -0.627
83 A -0.449
84 L -0.685
85 L -0.710
86 E -0.664
87 K -0.455
88 K -0.535
89 K -0.464
90 K -0.602
91 L -0.635
92 L -0.577
93 E -0.614
94 I -0.704
95 A -0.624
96 R -0.700
97 A -0.748
98 N -0.684
99 M -0.768
100 L -0.807
101 E -0.712
102 N -0.696
103 M -0.848
104 Q -0.755
105 K -0.718
106 S -0.684
107 Q -0.713
108 E -0.746
109 G -0.695
110 N -0.745
111 T -0.730
112 P -0.709
113 D -0.758
114 L -0.742
115 S -0.762
116 K -0.761
117 L -0.791
118 S -0.619
119 L -0.802
120 Q -0.691
121 E -0.573
122 N -0.766
123 E -0.749
124 E -0.816
125 N -0.750
126 K -0.827
127 E -0.806
128 K -0.734
129 E -0.770
130 E -0.816
131 P -0.759
132 K -0.815
133 K -0.767
134 E -0.793
135 E -0.836
136 P -0.856
137 E -0.571
138 Q -0.870
139 L -0.820
140 T -0.783
141 E -0.735
142 E -0.712
143 E -0.647
144 M -0.855
145 A -0.786
146 E -0.625
147 R -0.762
148 V -0.859
149 M -0.809
150 Q -0.680
151 E -0.607
152 K -0.683
153 L -0.904
154 R -0.835
155 N -0.764
156 R -0.889
157 V -0.725
158 D -0.669
159 I -0.372
160 P -0.468
161 L -0.424
162 E -0.480
163 Q -0.497
164 C 3.250
165 L 0.682
166 F 1.244
167 C 1.551
168 E -0.605
169 H -0.698
170 N -0.303
171 K -0.531
172 H -0.582
173 F -0.312
174 K -0.319
175 D 0.394
176 V -0.157
177 E -0.504
178 E -0.338
179 N 0.614
180 L 0.292
181 E -0.546
182 H 2.423
183 M 2.740
184 F -0.645
185 R -0.396
186 T -0.705
187 H 2.378
188 G 1.007
189 F 1.543
190 Y 1.530
191 I 1.289
192 P 2.880
193 E 1.209
194 Q -0.245
195 K -0.102
196 Y 1.329
197 L 1.237
198 V 0.009
199 D 1.668
200 K -0.197
201 I -0.532
202 G 1.196
203 L 1.669
204 V 0.915
205 K -0.562
206 Y 0.563
207 M 1.221
208 S -0.318
209 E -0.252
210 K 0.001
211 I 1.224
212 G -0.461
213 L -0.595
214 G -0.184
215 N 0.132
216 I -0.350
217 C 3.250
218 I 1.113
219 V -0.349
220 C 3.250
221 N -0.017
222 Y -0.357
223 Q -0.705
224 G 0.246
225 R -0.456
226 T 0.957
227 L -0.156
228 T -0.552
229 A 1.291
230 V 0.792
231 R 1.452
232 Q -0.089
233 H 3.250
234 M 1.407
235 L -0.592
236 A 0.274
237 K 1.228
238 R -0.066
239 H 3.250
240 C 0.087
241 K 0.582
242 I 1.173
243 P -0.200
244 Y 0.691
245 E 0.106
246 S -0.203
247 E -0.324
248 D -0.431
249 E 0.258
250 R -0.130
251 L -0.314
252 E -0.003
253 I 0.758
254 S 0.388
255 E 0.160
256 F 1.516
257 Y 2.094
258 D 1.408
259 F 1.575
260 T 0.104
261 S -0.266
262 S -0.020
263 Y -0.031
264 A -0.327
265 N -0.398
266 F -0.766
267 N -0.527
268 S -0.585
269 N -0.755
270 T -0.593
271 T -0.703
272 P -0.595
273 D -0.565
274 N -0.640
275 E -0.449
276 D -0.458
277 D -0.573
278 W -0.725
279 E -0.569
280 D -0.540
281 V -0.722
282 G -0.363
283 S -0.613
284 D -0.595
285 E -0.579
286 A -0.708
287 G -0.720
288 S -0.697
289 D -0.671
290 D -0.558
291 E -0.616
292 D -0.636
293 L -0.740
294 P -0.547
295 Q -0.760
296 E -0.744
297 Y -0.762
298 L -0.473
299 Y -0.533
300 N -0.540
301 D -0.056
302 G -0.025
303 I -0.434
304 E 0.391
305 L 1.442
306 H -0.170
307 L 2.542
308 P 1.596
309 T 0.670
310 G 1.899
311 I -0.206
312 K 0.020
313 V 1.293
314 G 2.522
315 H 1.371
316 R 2.823
317 S -0.221
318 L 0.262
319 Q -0.269
320 R -0.060
321 Y 0.703
322 Y 1.413
323 K 0.110
324 Q 2.126
325 D 0.277
326 L 0.306
327 K -0.517
328 P -0.616
329 E -0.668
330 V -0.587
331 I -0.679
332 L -0.742
333 T -0.615
334 E -0.581
335 G -0.481
336 Q -0.697
337 G -0.527
338 T -0.553
339 L -0.498
340 V -0.529
341 A -0.690
342 A -0.654
343 E -0.528
344 T -0.635
345 R -0.311
346 S -0.590
347 F -0.614
348 L -0.542
349 P -0.489
350 A -0.586
351 F -0.776
352 D -0.379
353 K -0.750
354 K -0.556
355 G -0.708
356 V -0.620
357 Q -0.481
358 T -0.608
359 Q -0.484
360 Q 0.122
361 R -0.214
362 V -0.595
363 W -0.696
364 Q -0.625
365 T -0.636
366 E -0.470
367 R -0.516
368 F -0.695
369 D -0.638
370 K -0.437
371 K -0.259
372 R -0.682
373 L -0.663
374 D -0.594
375 K -0.422
376 R -0.366
377 S -0.600
378 A -0.661
379 K -0.193
380 F -0.342
381 V -0.153
382 N 1.186
383 N -0.122
384 Q 1.402
385 P 0.216
386 H 1.491
387 Y 1.402
388 R 1.511
389 D -0.345
390 Q 1.135
391 L 0.784
392 L 2.339
393 Q 3.250
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 372.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MSSSGVYTCN SCVLTFDSSD EQRAHMKSDW HRYNLKRRVA QLPPISFETF DSKVSAAAAS
70 80 90 100 110 120
TSKSAEKEKP VTKKELKRRE KQALLEKKKK LLEIARANML ENMQKSQEGN TPDLSKLSLQ
130 140 150 160 170 180
ENEENKEKEE PKKEEPEQLT EEEMAERVMQ EKLRNRVDIP LEQCLFCEHN KHFKDVEENL
190 200 210 220 230 240
EHMFRTHGFY IPEQKYLVDK IGLVKYMSEK IGLGNICIVC NYQGRTLTAV RQHMLAKRHC
250 260 270 280 290 300
KIPYESEDER LEISEFYDFT SSYANFNSNT TPDNEDDWED VGSDEAGSDD EDLPQEYLYN
310 320 330 340 350 360
DGIELHLPTG IKVGHRSLQR YYKQDLKPEV ILTEGQGTLV AAETRSFLPA FDKKGVQTQQ
370 380 390
RVWQTERFDK KRLDKRSAKF VNNQPHYRDQ LLQ
6RZZ (CryoEm,3.2 Å resolution)
Rei1 is a pre-60S associated factor which facilitates the cytoplasmic maturation of the 60S subunit. It is identified in proteomics study by Kirli et al. as a CRM1 binder. Export activity is verified as GFP- and GFP-NLS-fusions in an LMB-sensitive manner. No putative NES have been identified yet.
Ref.1A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning, Kirli et al., eLife, 2015
[1]. "A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning"
Kırlı K, Karaca S, Dehne HJ, Samwer M, Pan KT, Lenz C, Urlaub H, Görlich D. (2015)
eLife,
4:e11466
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.