Show FASTA Format
>sp|O95684|CEP43_HUMAN Centrosomal protein 43 OS=Homo sapiens OX=9606 GN=CEP43 PE=1 SV=1
MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE
SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE
GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKIPRYKGQ
GKKKTSGQKAGDKKANDEANQSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDK
AGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAP
SLKDSESKRGNTVLKDLKLISDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIE
EDLSVEIDDINTSDKLDDLTQDLTVSQLSDVADYLEDVA
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 912222220002268999999998731245777768876543443443210388976337
Pred: CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
AA: MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE
10 20 30 40 50 60
Conf: 798642497436799999999985078551000004544667977088899990996547
Pred: HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCHHHHHHHHCCCCCC
AA: SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE
70 80 90 100 110 120
Conf: 999986389999976424899998998778998999999999998878899999886789
Pred: CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKIPRYKGQ
130 140 150 160 170 180
Conf: 986556866788666777788887544568764454332342123587788988777777
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: GKKKTSGQKAGDKKANDEANQSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDK
190 200 210 220 230 240
Conf: 899999888789988899999988777888897323599998889999988988788999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: AGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAP
250 260 270 280 290 300
Conf: 999977768986323332234445789999999988778999998777786566430011
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
AA: SLKDSESKRGNTVLKDLKLISDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIE
310 320 330 340 350 360
Conf: 132343458998888545566652013478642112579
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: EDLSVEIDDINTSDKLDDLTQDLTVSQLSDVADYLEDVA
370 380 390
Show Conservation Score by AL2CO
1 M -1.000 *
2 A -1.000 *
3 A -1.000 *
4 T -1.000 *
5 A -1.000 *
6 A -1.000 *
7 A -1.000 *
8 V -1.000 *
9 V 0.564
10 A 0.244
11 E 0.874
12 E 2.306
13 D 1.415
14 T -0.238
15 E 1.691
16 L 2.601
17 R 3.085
18 D 0.178
19 L 0.042
20 L 2.382
21 V 0.276
22 Q 0.717
23 T 0.580
24 L 3.973
25 E 1.492
26 N 0.565
27 S 0.664
28 G 5.430
29 V 0.692
30 L 2.621
31 N 0.762
32 R 0.398
33 I 2.127
34 K 2.340
35 A 2.523
36 E 1.392
37 L 2.351
38 R 3.141
39 A 1.572
40 A 0.764
41 V 1.672
42 F 1.436
43 L -0.060
44 A 0.564
45 L 1.901
46 E 0.402
47 E 0.379
48 Q 0.341
49 E 0.008
50 K -0.190
51 V -0.703
52 E -0.556
53 N -0.327
54 K -0.598
55 T -0.449
56 P 0.340
57 L -0.172
58 V -0.258
59 N 1.689
60 E 0.008
61 S -0.415
62 L 0.252
63 K 0.331
64 K 0.010
65 F 0.625
66 L -0.149
67 N -0.081
68 T 0.657
69 K 0.273
70 D 0.389
71 G 1.326
72 R -0.402
73 L 0.471
74 V 0.796
75 A 0.075
76 S 0.070
77 L 2.291
78 V 2.563
79 A -0.365
80 E 3.402
81 F 2.211
82 L 2.719
83 Q 0.445
84 F 0.315
85 F 0.919
86 N 0.371
87 L 2.171
88 D 0.561
89 F 0.244
90 T 2.594
91 L 0.247
92 A 0.276
93 V 2.811
94 F 2.643
95 Q -0.381
96 P 1.173
97 E 4.099
98 T 0.940
99 S 0.475
100 T 0.021
101 L -0.863
102 Q -0.426
103 G -0.088
104 L -0.476
105 E -0.904
106 G -0.160
107 R 0.324
108 E 0.199
109 N -0.536
110 L 1.191
111 A -0.127
112 R -0.316
113 D 0.169
114 L 0.109
115 G -0.448
116 I 0.294
117 I -0.683
118 E -0.105
119 A -0.583
120 E -0.093
121 G -0.603
122 T -0.069
123 V -0.736
124 G 0.230
125 G -0.254
126 P 1.273
127 L 1.591
128 L 1.498
129 L -0.504
130 E -0.416
131 V 2.147
132 I 1.155
133 R 0.225
134 R -0.001
135 C -0.468
136 Q -0.906
137 Q -0.178
138 K -0.582
139 E -0.451
140 K -0.201
141 G -0.793
142 P -0.602
143 T -0.733
144 T -0.766
145 G -0.174
146 E -0.502
147 G -0.648
148 A -0.626
149 L -1.028
150 D -0.916
151 L -0.843
152 S -0.685
153 D -0.412
154 V -0.435
155 H -0.764
156 S -0.976
157 P -0.557
158 P -0.655
159 K -0.636
160 S -0.769
161 P -0.835
162 E -0.713
163 G -0.699
164 K -0.590
165 T -0.690
166 S -0.641
167 A -0.868
168 Q -1.084
169 T -0.687
170 T -0.941
171 P -0.607
172 S -0.945
173 K -0.427
174 I -0.779
175 P -0.580
176 R -0.998
177 Y -1.169
178 K -0.522
179 G -0.954
180 Q -0.755
181 G -0.959
182 K -0.608
183 K -1.027
184 K -0.985
185 T -0.910
186 S -0.979
187 G -0.950
188 Q -0.825
189 K -0.677
190 A -0.797
191 G -0.756
192 D -0.674
193 K -0.952
194 K -1.187
195 A -1.024
196 N -0.804
197 D -0.919
198 E -0.678
199 A -1.068
200 N -0.917
201 Q -1.085
202 S -0.614
203 D -0.855
204 T -0.755
205 S -0.827
206 V -0.919
207 S -0.592
208 L -0.915
209 S -0.579
210 E -0.534
211 P -0.880
212 K -0.740
213 S -0.933
214 K -0.765
215 S -0.732
216 S -0.971
217 L -1.000
218 H -0.834
219 L -0.945
220 L -0.377
221 S -0.612
222 H -0.951
223 E -0.626
224 T -0.906
225 K -0.683
226 I -0.781
227 G -0.558
228 S -0.777
229 F -0.963
230 L -0.780
231 S -0.681
232 N -0.545
233 R -0.447
234 T -0.854
235 L -0.749
236 D -0.882
237 G -1.016
238 K -0.707
239 D -0.542
240 K -0.836
241 A -0.673
242 G -0.358
243 L -0.910
244 C -0.828
245 P -0.872
246 D -0.270
247 E -0.692
248 D -0.360
249 D -0.520
250 M -0.658
251 E -0.494
252 G -0.304
253 D -0.585
254 S -0.440
255 F -0.200
256 F -0.583
257 D -0.473
258 D -0.178
259 P -0.211
260 I -0.512
261 P 0.307
262 K 0.130
263 P -0.482
264 E -0.569
265 K -0.354
266 T -0.370
267 Y -0.931
268 G -0.229
269 L -0.914
270 R -0.579
271 K -0.294
272 E -0.419
273 P -0.635
274 R -0.819
275 K -0.368
276 Q -0.584
277 A -0.800
278 G -0.539
279 S -0.335
280 L -0.605
281 A -0.377
282 S -0.345
283 L -0.240
284 S -0.371
285 D -0.422
286 A -0.607
287 P -0.207
288 P -0.719
289 L -0.484
290 K -0.313
291 S -0.303
292 G -0.043
293 L -0.224
294 S -0.000
295 S -0.404
296 L -0.906
297 A -0.632
298 G 0.059
299 A -0.141
300 P 0.222
301 S -0.604
302 L -0.505
303 K -0.272
304 D -0.321
305 S -0.422
306 E -0.296
307 S -0.678
308 K -0.589
309 R -0.368
310 G -0.084
311 N -0.449
312 T -0.288
313 V -0.848
314 L -0.741
315 K -0.211
316 D 0.490
317 L -0.067
318 K -0.705
319 L -0.537
320 I -0.236
321 S 0.368
322 D -0.529
323 K 0.018
324 I -0.463
325 G 0.000
326 S -0.025
327 L -0.585
328 G -0.550
329 L 0.002
330 G -1.000 *
331 T -0.588
332 G -0.226
333 E 0.191
334 D 0.188
335 D -0.062
336 D 0.370
337 Y -0.499
338 V -0.147
339 D 0.436
340 D 0.013
341 F -0.168
342 N -0.006
343 S 0.085
344 T -0.239
345 S -0.058
346 H 0.506
347 R -0.324
348 S 0.408
349 E 0.218
350 K 0.432
351 S 0.261
352 E 0.499
353 I -0.152
354 S 0.820
355 I 0.361
356 G 0.333
357 E 1.080
358 E 1.358
359 I 0.415
360 E 0.959
361 E 1.551
362 D -1.000 *
363 L -1.000 *
364 S -1.000 *
365 V 0.460
366 E 0.436
367 I -1.000 *
368 D 1.110
369 D 0.578
370 I 0.449
371 N 0.491
372 T -0.266
373 S 1.897
374 D 0.902
375 K 1.097
376 L -1.000 *
377 D 1.577
378 D 1.620
379 L 0.776
380 T 2.621
381 Q -1.000 *
382 D -1.000 *
383 L -1.000 *
384 T -1.000 *
385 V -1.000 *
386 S -1.000 *
387 Q -1.000 *
388 L -1.000 *
389 S -1.000 *
390 D -1.000 *
391 V -1.000 *
392 A -1.000 *
393 D -1.000 *
394 Y -1.000 *
395 L -1.000 *
396 E -1.000 *
397 D -1.000 *
398 V -1.000 *
399 A -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 381.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MAATAAAVVA EEDTELRDLL VQTLENSGVL NRIKAELRAA VFLALEEQEK VENKTPLVNE
70 80 90 100 110 120
SLKKFLNTKD GRLVASLVAE FLQFFNLDFT LAVFQPETST LQGLEGRENL ARDLGIIEAE
130 140 150 160 170 180
GTVGGPLLLE VIRRCQQKEK GPTTGEGALD LSDVHSPPKS PEGKTSAQTT PSKIPRYKGQ
190 200 210 220 230 240
GKKKTSGQKA GDKKANDEAN QSDTSVSLSE PKSKSSLHLL SHETKIGSFL SNRTLDGKDK
250 260 270 280 290 300
AGLCPDEDDM EGDSFFDDPI PKPEKTYGLR KEPRKQAGSL ASLSDAPPLK SGLSSLAGAP
310 320 330 340 350 360
SLKDSESKRG NTVLKDLKLI SDKIGSLGLG TGEDDDYVDD FNSTSHRSEK SEISIGEEIE
370 380 390
EDLSVEIDDI NTSDKLDDLT QDLTVSQLSD VADYLEDVA
CEP43 functions in anchoring microtubules to centrosomes. Two putative NESs (classical NES: 352-370 and reverse NES: 379-397) were identified by in silico prediction methods in Sendino et al. using possible XPO1/CRM1-cancer exportome proteins identified previously as putative CRM1-binders by Kirli et al. (not all proteins were validated in full-length). These putative NESs were tested using Rev(1.4)-GFP assay which all showed weak activity. Only 352-370 was tested in SRV
B/A reporter with co-expression with CRM1, and showed no change in localization. Therefore, no CRM1-dependency has been demonstrated for any of the NESs.
Ref.1A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning, Kirli et al., eLife, 2015 Ref.2Using a Simple Cellular Assay to Map NES Motifs in Cancer-Related Proteins, Gain Insight into CRM1-Mediated NES Export, and Search for NES-Harboring Micropeptides, Sendino et al., Int J Mol Sci, 2020
[1]. "A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning"
Kırlı K, Karaca S, Dehne HJ, Samwer M, Pan KT, Lenz C, Urlaub H, Görlich D. (2015)
eLife,
4:e11466
PubMed[2]. "Using a Simple Cellular Assay to Map NES Motifs in Cancer-Related Proteins, Gain Insight into CRM1-Mediated NES Export, and Search for NES-Harboring Micropeptides"
Sendino M, Omaetxebarria MJ, Prieto G, Rodriguez JA. (2020)
Int J Mol Sci,
21(17):E6341
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.