Summary for West Nile Virus NS5 (NES ID: 389)

Full Name
RNA-directed RNA polymerase NS5     UniProt    
Alternative Names
None
Organism
Kunjin virus (strain MRM61C)    
Experimental Evidence for CRM1-mediated Export
LMB Sensitive Ref.1Nucleocytoplasmic shuttling of the West Nile virus RNA-dependent RNA polymerase NS5 is critical to infection, Lopez et al., Cell Microbiol, 2018
Mutations That Affect Nuclear Export
Unknown
Mutations That Affect CRM1 Binding
Unknown
Functional Export Signals
Undetermined
Secondary Structure of Export Signal
Unknown
Other Residues Important for Export
Unknown
Sequence
Show FASTA Format Show Domain Info by CDD Show Secondary Structure by PSIPRED Show Conservation Score by AL2CO 
        10         20         30         40         50         60 
GGAKGRTLGE VWKERLNQMT KEEFIRYRKE AITEVDRSAA KHARKERNIT GGHPVSRGTA 

        70         80         90        100        110        120 
KLRWLVERRF LEPVGKVIDL GCGRGGWCYY MATQKRVQEV RGYTKGGPGH EEPQLVQSYG 

       130        140        150        160        170        180 
WNIVTMKSGV DVFYRPSECC DTLLCDIGES SSSAEVEEHR TLRVLEMVED WLHRGPKEFC 

       190        200        210        220        230        240 
VKVLCPYMPK VIEKMELLQR RYGGGLVRNP LSRNSTHEMY WVSRASGNVV HSVNMTSQVL 

       250        260        270        280        290        300 
LGRMEKKTWK GPQYEEDVNL GSGTRAVGKP LLNSDTSKIK NRIERLRREY SSTWHHDENH 

       310        320        330        340        350        360 
PYRTWNYHGS YEVKPTGSAS SLVNGVVRLL SKPWDTITNV TTMAMTDTTP FGQQRVFKEK 

       370        380        390        400        410        420 
VDTKAPEPPE GVKYVLNETT NWLWAFLARE KRPRMCSREE FIRKVNSNAA LGAMFEEQNQ 

       430        440        450        460        470        480 
WRSAREAVED PKFWEMVDEE REAHLRGECH TCIYNMMGKR EKKPGEFGKA KGSRAIWFMW 

       490        500        510        520        530        540 
LGARFLEFEA LGFLNEDHWL GRKNSGGGVE GLGLQKLGYI LREVGTRPGG RIYADDTAGW 

       550        560        570        580        590        600 
DTRITRADLE NEAKVLELLD GEHRRLARAI IELTYRHKVV KVMRPAADGR TVMDVISRED 

       610        620        630        640        650        660 
QRGSGQVVTY ALNTFTNLAV QLVRMMEGEG VIGPDDVEKL TKGKGPKVRT WLSENGEERL 

       670        680        690        700        710        720 
SRMAVSGDDC VVKPLDDRFA TSLHFLNAMS KVRKDIQEWK PSTGWYDWQQ VPFCSNHFTE 

       730        740        750        760        770        780 
LIMKDGRTLV TPCRGQDELV GRARISPGAG WNVRDTACLA KSYAQMWLLL YFHRRDLRLM 

       790        800        810        820        830        840 
ANAICSAVPV NWVPTGRTTW SIHAGGEWMT TEDMLEVWNR VWIEENEWME DKTPVEKWSD 

       850        860        870        880        890        900 
VPYSGKREDI WCGSLIGTRA RATWAENIQV AINQVRSIIG DEKYVDYMSS LKRYEDTTLV 

                                                                  
EDTVL
3D Structures in PDB
2HCS (X-ray,2.50 Å resolution)
Comments
NS5 of West Nile virus is residues 2529-3433 of the genome polyprotein. It is the largest protein crucial for virus replication. Dengue Virus NS5 is in entry 78. Lopez-Denman et al. reported that West Nile Virus NS5 is also a nucleocytoplasmic trafficking protein and that LMB caused nuclear accumulation of the protein. The NES have not been identified yet. Note: Sequence analysis links in this entry refer to the entire uniprot entry which include other proteins within the genome polyprotein. Ref.1Nucleocytoplasmic shuttling of the West Nile virus RNA-dependent RNA polymerase NS5 is critical to infection, Lopez et al., Cell Microbiol, 2018
References
[1]. "Nucleocytoplasmic shuttling of the West Nile virus RNA-dependent RNA polymerase NS5 is critical to infection"
Lopez-Denman AJ, Russo A, Wagstaff KM, White PA, Jans DA, Mackenzie JM. (2018) Cell Microbiol, 20(8):e12848 PubMed
User Input
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