Summary for Smad1 (NES ID: 40)
Full Name
Mothers against decapentaplegic homolog 1 (Mothers against DPP homolog 1)
UniProt
Alternative Names
Transforming growth factor-beta-signaling protein 1 (BSP-1)
Organism
Homo sapiens (Human)
Experimental Evidence for CRM1-mediated Export
Mutations That Affect Nuclear Export
Mutations That Affect CRM1 Binding
Unknown
Functional Export Signals
Secondary Structure of Export Signal
α-helix
Other Residues Important for Export
Unknown
Sequence
Show FASTA Format
>gi|13633915|sp|Q15797.1|SMAD1_HUMAN RecName: Full=Mothers against decapentaplegic homolog 1; Short=MAD homolog 1; Short=Mothers against DPP homolog 1; AltName: Full=JV4-1; AltName: Full=Mad-related protein 1; AltName: Full=SMAD family member 1; Short=SMAD 1; Short=Smad1; Short=hSMAD1; AltName: Full=Transforming growth factor-beta-signaling protein 1; Short=BSP-1
MNVTSLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSCPGQPSNCVTIPRS
LDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINPYHYKRVESPVLPPVLV
PRHSEYNPQHSLLAQFRNLGQNEPHMPLNATFPDSFQQPNSHPFPHSPNSSYPNSPGSSSSTYPHSPTSS
DPGSPFQMPADTPPPAYLPPEDPMTQDGSQPMDTNMMAPPLPSEINRGDVQAVAYEEPKHWCSIVYYELN
NRVGEAFHASSTSVLVDGFTDPSNNKNRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSD
SSIFVQSRNCNYHHGFHPTTVCKIPSGCSLKIFNNQEFAQLLAQSVNHGFETVYELTKMCTIRMSFVKGW
GAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNPISSVS
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 963457899859999874133589302478999999998643215806899998619999
Pred: CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
AA: MNVTSLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSCPGQ
10 20 30 40 50 60
Conf: 974188138899741001268998237997653487422356798887888989999712
Pred: CCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEE
AA: PSNCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEV
70 80 90 100 110 120
Conf: 208866232226988998998899999989743225889999999999988999989999
Pred: EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: CINPYHYKRVESPVLPPVLVPRHSEYNPQHSLLAQFRNLGQNEPHMPLNATFPDSFQQPN
130 140 150 160 170 180
Conf: 999999999999999999999889999999999999999999999999999999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: SHPFPHSPNSSYPNSPGSSSSTYPHSPTSSDPGSPFQMPADTPPPAYLPPEDPMTQDGSQ
190 200 210 220 230 240
Conf: 998899999999989989888622479998522448840442233032187538735876
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCEEEECCCC
AA: PMDTNMMAPPLPSEINRGDVQAVAYEEPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFT
250 260 270 280 290 300
Conf: 899998750203224567860112211015860699998639988843886005407998
Pred: CCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCEEEEEECCCCEEEEECCCC
AA: DPSNNKNRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNC
310 320 330 340 350 360
Conf: 755697688503429998135424689999999987501012231002304278420158
Pred: CCCCCCCCCCCEECCCCCCEEEECCHHHHHHHHHHHHHCCHHHHHCCCCCEEEEEEECCC
AA: NYHHGFHPTTVCKIPSGCSLKIFNNQEFAQLLAQSVNHGFETVYELTKMCTIRMSFVKGW
370 380 390 400 410 420
Conf: 863112111248834887214713569999865199999988899
Pred: CCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCC
AA: GAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNPISSVS
430 440 450 460
Show Conservation Score by AL2CO
1 M -1.000 *
2 N -1.000 *
3 V -1.000 *
4 T -1.000 *
5 S -1.000 *
6 L -1.000 *
7 F -1.000 *
8 S -1.000 *
9 F -1.000 *
10 T -1.000 *
11 S -1.000 *
12 P 0.071
13 A 0.306
14 V 1.072
15 K 0.961
16 R 0.208
17 L 2.631
18 L 0.851
19 G -0.009
20 W 0.843
21 K 0.880
22 Q 0.391
23 G 0.482
24 D -0.047
25 E -0.213
26 E 0.662
27 E 0.390
28 K -0.472
29 W 1.022
30 A 0.296
31 E 1.058
32 K 1.215
33 A 0.671
34 V 1.018
35 D 0.347
36 A 0.782
37 L 1.718
38 V 0.891
39 K 2.263
40 K 1.922
41 L 1.593
42 K 1.472
43 K 0.542
44 K 0.400
45 K 0.024
46 G -0.298
47 A -0.264
48 M 1.088
49 E 0.736
50 E 0.049
51 L 2.490
52 E 0.113
53 K -0.669
54 A 2.014
55 L 1.338
56 S -0.202
57 C -0.224
58 P -0.103
59 G 0.446
60 Q -0.893
61 P -0.329
62 S 0.933
63 N -0.251
64 C 1.630
65 V 0.984
66 T 0.060
67 I 0.891
68 P 0.789
69 R -0.299
70 S -0.148
71 L -0.325
72 D 0.055
73 G 0.120
74 R -0.218
75 L -0.298
76 Q -0.242
77 V -0.269
78 S -0.394
79 H -0.762
80 R 0.163
81 K -0.505
82 G -0.329
83 L 0.234
84 P 0.010
85 H 0.975
86 V 0.909
87 I 0.538
88 Y 0.177
89 C 0.629
90 R 1.577
91 V 0.975
92 W 1.912
93 R 1.604
94 W 1.391
95 P 0.340
96 D -0.060
97 L 0.734
98 Q -0.216
99 S 0.071
100 H -1.000 *
101 H -0.478
102 E 1.442
103 L 1.160
104 K 0.357
105 P 0.309
106 L 0.011
107 E 0.166
108 C -1.088
109 C 1.385
110 E -0.350
111 F 0.065
112 P 0.311
113 F 0.096
114 G -0.531
115 S -0.747
116 K 0.410
117 Q -0.688
118 K -0.166
119 E -0.811
120 V 0.646
121 C 1.481
122 I 0.678
123 N 0.466
124 P 0.850
125 Y 0.262
126 H 1.227
127 Y -0.515
128 K -0.908
129 R -0.113
130 V -0.480
131 E -0.621
132 S -0.686
133 P -0.427
134 V -0.793
135 L -0.856
136 P -0.289
137 P -0.286
138 V -0.423
139 L -0.550
140 V -0.327
141 P -0.034
142 R -0.798
143 H -0.715
144 S -0.855
145 E -0.579
146 Y -0.795
147 N -0.793
148 P -0.764
149 Q -0.789
150 H -0.902
151 S -0.883
152 L -0.767
153 L -0.782
154 A -0.683
155 Q -0.888
156 F -0.773
157 R -0.914
158 N -0.689
159 L -0.858
160 G -0.859
161 Q -1.034
162 N -0.828
163 E -0.942
164 P -0.472
165 H -0.862
166 M -0.825
167 P -0.826
168 L -0.786
169 N -0.799
170 A -0.891
171 T -0.758
172 F -0.863
173 P -1.011
174 D -0.836
175 S -0.615
176 F -0.886
177 Q -0.897
178 Q -0.883
179 P -0.816
180 N -0.934
181 S -0.827
182 H -0.886
183 P -0.892
184 F -0.859
185 P -0.681
186 H -0.968
187 S -1.010
188 P -0.844
189 N -0.700
190 S -0.947
191 S -0.797
192 Y -0.893
193 P -0.759
194 N -0.814
195 S -0.865
196 P -1.076
197 G -0.951
198 S -1.071
199 S -1.016
200 S -0.736
201 S -1.064
202 T -0.718
203 Y -0.912
204 P -0.906
205 H -1.135
206 S -0.863
207 P -1.011
208 T -0.686
209 S -0.867
210 S -1.107
211 D -0.857
212 P -0.711
213 G -1.077
214 S -0.971
215 P -0.592
216 F -0.896
217 Q -1.068
218 M -0.962
219 P -1.057
220 A -0.976
221 D -0.930
222 T -1.052
223 P -1.010
224 P -0.797
225 P -0.767
226 A -0.948
227 Y -1.079
228 L -1.059
229 P -1.002
230 P -0.994
231 E -0.721
232 D -0.869
233 P -0.683
234 M -1.043
235 T -0.887
236 Q -0.848
237 D -0.699
238 G -1.033
239 S -1.073
240 Q -0.910
241 P -0.645
242 M -1.018
243 D -0.816
244 T -0.978
245 N -0.884
246 M -0.626
247 M -1.046
248 A -0.937
249 P -0.958
250 P -0.722
251 L -0.812
252 P -0.649
253 S -0.920
254 E -0.885
255 I -1.000
256 N -0.994
257 R -0.977
258 G -0.966
259 D -0.768
260 V -1.125
261 Q -0.929
262 A -0.757
263 V -0.380
264 A -0.932
265 Y -0.615
266 E -0.636
267 E -0.701
268 P -0.383
269 K -0.828
270 H -0.660
271 W 0.698
272 C 0.727
273 S -0.328
274 I 1.167
275 V -0.402
276 Y 0.810
277 Y 0.623
278 E 2.566
279 L -0.225
280 N -0.068
281 N -0.504
282 R 0.334
283 V 0.236
284 G 0.944
285 E -0.015
286 A -0.842
287 F 0.647
288 H -0.714
289 A 0.045
290 S -0.843
291 S -0.764
292 T -0.324
293 S -0.614
294 V 0.508
295 L -0.616
296 V 1.127
297 D 0.675
298 G 2.041
299 F -0.239
300 T -0.360
301 D -0.067
302 P -0.055
303 S -0.546
304 N -0.825
305 N -0.278
306 K -0.755
307 N -0.245
308 R 0.316
309 F 0.560
310 C 1.862
311 L 1.113
312 G 0.642
313 L -0.544
314 L -0.307
315 S -0.398
316 N 0.317
317 V -0.362
318 N -0.649
319 R 0.564
320 N -0.428
321 S -0.602
322 T -0.619
323 I 1.013
324 E -0.497
325 N -0.497
326 T 0.621
327 R 0.422
328 R -0.585
329 H -0.008
330 I 1.187
331 G 0.760
332 K -0.531
333 G 1.883
334 V 0.575
335 H -0.603
336 L 1.417
337 Y -0.731
338 Y -0.471
339 V -0.558
340 G -0.886
341 G 0.384
342 E -0.131
343 V 0.828
344 Y 0.019
345 A 0.421
346 E -0.438
347 C 1.022
348 L -0.370
349 S 0.419
350 D -0.343
351 S -0.669
352 S 0.652
353 I 1.731
354 F 3.001
355 V 1.233
356 Q -0.286
357 S 1.514
358 R -0.755
359 N -0.290
360 C 0.177
361 N 0.781
362 Y -0.890
363 H -0.807
364 H -0.490
365 G 0.186
366 F -0.849
367 H -0.772
368 P -0.146
369 T -0.443
370 T -0.284
371 V 1.230
372 C -0.495
373 K 1.821
374 I 1.064
375 P -0.339
376 S 0.396
377 G -0.428
378 C -0.579
379 S -0.394
380 L 0.095
381 K -0.033
382 I 1.322
383 F 2.110
384 N 0.119
385 N -0.608
386 Q -0.597
387 E -0.745
388 F 0.264
389 A -0.743
390 Q -0.876
391 L -0.296
392 L 0.355
393 A -0.299
394 Q -1.016
395 S -0.333
396 V -0.863
397 N -0.708
398 H -0.955
399 G -0.907
400 F -0.804
401 E -0.604
402 T -0.533
403 V -0.072
404 Y -0.239
405 E -0.141
406 L 1.104
407 T -0.863
408 K 0.208
409 M -0.175
410 C 1.251
411 T -0.008
412 I 0.823
413 R 1.050
414 M 0.804
415 S 3.646
416 F 2.772
417 V 1.012
418 K 2.886
419 G 2.932
420 W 2.215
421 G 3.487
422 A -0.508
423 E -0.601
424 Y 2.358
425 H 0.228
426 R 3.478
427 Q -0.046
428 D -0.431
429 V 3.208
430 T 0.238
431 S 0.144
432 T 1.054
433 P 2.970
434 C 1.982
435 W 2.573
436 I 1.385
437 E 2.057
438 I 1.593
439 H -0.042
440 L 1.743
441 H -0.128
442 G -0.446
443 P 1.045
444 L 1.730
445 Q 0.473
446 W 0.301
447 L 1.956
448 D 4.578
449 K -0.079
450 V 0.722
451 L 1.282
452 T -0.564
453 Q -0.356
454 M 2.161
455 G 0.484
456 S -1.000 *
457 P -1.000 *
458 H -1.000 *
459 N -1.000 *
460 P -1.000 *
461 I -1.000 *
462 S -1.000 *
463 S -1.000 *
464 V -1.000 *
465 S -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 40.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MNVTSLFSFT SPAVKRLLGW KQGDEEEKWA EKAVDALVKK LKKKKGAMEE LEKALSCPGQ
70 80 90 100 110 120
PSNCVTIPRS LDGRLQVSHR KGLPHVIYCR VWRWPDLQSH HELKPLECCE FPFGSKQKEV
130 140 150 160 170 180
CINPYHYKRV ESPVLPPVLV PRHSEYNPQH SLLAQFRNLG QNEPHMPLNA TFPDSFQQPN
190 200 210 220 230 240
SHPFPHSPNS SYPNSPGSSS STYPHSPTSS DPGSPFQMPA DTPPPAYLPP EDPMTQDGSQ
250 260 270 280 290 300
PMDTNMMAPP LPSEINRGDV QAVAYEEPKH WCSIVYYELN NRVGEAFHAS STSVLVDGFT
310 320 330 340 350 360
DPSNNKNRFC LGLLSNVNRN STIENTRRHI GKGVHLYYVG GEVYAECLSD SSIFVQSRNC
370 380 390 400 410 420
NYHHGFHPTT VCKIPSGCSL KIFNNQEFAQ LLAQSVNHGF ETVYELTKMC TIRMSFVKGW
430 440 450 460
GAEYHRQDVT STPCWIEIHL HGPLQWLDKV LTQMGSPHNP ISSVS
3D Structures in PDB
1KHU (X-Ray,2.50 Å resolution)
Comments
Smad mediates signaling by bone morphogenetic (BMP). In resting state, Smad1 is distributed throughout the cytoplasm and the nucleus. After treatment with BMP, Smad1 completely accumulated in the nucleus. Xiao et al. showed that mutation of K39N/K40Q or deletion of aa 42-45 failed to display nuclear accumulation, thus establishing that this motif is an NLS. LMB treatment also induces nuclear accumulation in resting stage, indicating the presence of NES. They found that aa 406-414, fused to GST, caused a nuclear exclusion of GST from the nucleus after microinjection. L406A/M409A mutation eliminate its ability to exclude GST from nucleus. They also showed that both NLS and NES are required for optimal gene transcription activation.
References
[1]. "Nucleocytoplasmic shuttling of Smad1 conferred by its nuclear localization and nuclear export signals"
Xiao, Z., Watson, N., Rodriguez, C., Lodish, H.F.. (2001)
J Biol Chem,
276:39404-39410
PubMed
User Input
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