Summary for E2F1 (NES ID: 59)
Full Name
Transcription factor E2F1
UniProt Alternative Names
PBR3
PRB-binding protein E2F-1
Retinoblastoma-associated protein 1 (RBAP-1)
Retinoblastoma-binding protein 3 (RBBP-3)
Organism
Homo sapiens (Human)
Experimental Evidence for CRM1-mediated Export
Mutations That Affect Nuclear Export
Mutations That Affect CRM1 Binding
Unknown
Functional Export Signals
Undetermined
Secondary Structure of Export Signal
Unknown; NES not included in PDBs
Other Residues Important for Export
Unknown
Sequence
Show FASTA Format
>gi|400928|sp|Q01094.1|E2F1_HUMAN RecName: Full=Transcription factor E2F1; Short=E2F-1; AltName: Full=PBR3; AltName: Full=PRB-binding protein E2F-1; AltName: Full=Retinoblastoma-associated protein 1; Short=RBAP-1; AltName: Full=Retinoblastoma-binding protein 3; Short=RBBP-3
MALAGAPAGGPCAPALEALLGAGALRLLDSSQIVIISAAQDASAPPAPTGPAAPAAGPCDPDLLLFATPQ
APRPTPSAPRPALGRPPVKRRLDLETDHQYLAESSGPARGRGRHPGKGVKSPGEKSRYETSLNLTTKRFL
ELLSHSADGVVDLNWAAEVLKVQKRRIYDITNVLEGIQLIAKKSKNHIQWLGSHTTVGVGGRLEGLTQDL
RQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDSSE
NFQISLKSKQGPIDVFLCPEETVGGISPGKTPSQEVTSEEENRATDSATIVSPPPSSPPSSLTTDPSQSL
LSLEQEPLLSRMGSLRAPVDEDRLSPLVAADSLLEHVREDFSGLLPEEFISLSPPHEALDYHFGLEEGEG
IRDLFDCDFGDLTPLDF
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 966789999999502566622886566799733562179888999999999999999999
Pred: CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
AA: MALAGAPAGGPCAPALEALLGAGALRLLDSSQIVIISAAQDASAPPAPTGPAAPAAGPCD
10 20 30 40 50 60
Conf: 988775689999999999999999999620025777851224567999899999999989
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: PDLLLFATPQAPRPTPSAPRPALGRPPVKRRLDLETDHQYLAESSGPARGRGRHPGKGVK
70 80 90 100 110 120
Conf: 999888532136777999999840099941008998989533552201100011120123
Pred: CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCHHH
AA: SPGEKSRYETSLNLTTKRFLELLSHSADGVVDLNWAAEVLKVQKRRIYDITNVLEGIQLI
130 140 150 160 170 180
Conf: 312688124404899988851466799999999999876789999999998530045679
Pred: HHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AA: AKKSKNHIQWLGSHTTVGVGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDS
190 200 210 220 230 240
Conf: 866652255420158988855899958999725745999964999514999637993578
Pred: CCCCCCCHHHHHCCCCCCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCEEEEECCC
AA: QRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDSSENFQISLKSKQGPIDVFLCPE
250 260 270 280 290 300
Conf: 877999999899988886423467899854899999999988989998887778776333
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: ETVGGISPGKTPSQEVTSEEENRATDSATIVSPPPSSPPSSLTTDPSQSLLSLEQEPLLS
310 320 330 340 350 360
Conf: 579999988857778886776200111100369996468458999999993450679999
Pred: CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
AA: RMGSLRAPVDEDRLSPLVAADSLLEHVREDFSGLLPEEFISLSPPHEALDYHFGLEEGEG
370 380 390 400 410 420
Conf: 54445689999999999
Pred: CCCCCCCCCCCCCCCCC
AA: IRDLFDCDFGDLTPLDF
430
Show Conservation Score by AL2CO
1 M -1.000 *
2 A -1.000 *
3 L -1.000 *
4 A -1.000 *
5 G -1.000 *
6 A -1.000 *
7 P -1.000 *
8 A -1.000 *
9 G -1.000 *
10 G -1.000 *
11 P -1.000 *
12 C -1.000 *
13 A -1.000 *
14 P -1.000 *
15 A -1.000 *
16 L -1.000 *
17 E -1.000 *
18 A -1.000 *
19 L -1.000 *
20 L -1.000 *
21 G -1.000 *
22 A -1.000 *
23 G -1.000 *
24 A -1.000 *
25 L -1.000 *
26 R -1.000 *
27 L -1.000 *
28 L -1.000 *
29 D -1.000 *
30 S -1.000 *
31 S -1.000 *
32 Q -1.000 *
33 I -1.000 *
34 V -1.000 *
35 I -1.000 *
36 I -1.000 *
37 S -1.000 *
38 A -1.000 *
39 A -1.000 *
40 Q -1.000 *
41 D -1.000 *
42 A -1.000 *
43 S -1.000 *
44 A -1.000 *
45 P -1.000 *
46 P -1.000 *
47 A -1.000 *
48 P -1.000 *
49 T -1.000 *
50 G -1.000 *
51 P -1.000 *
52 A -1.000 *
53 A -1.000 *
54 P -1.000 *
55 A -1.000 *
56 A -1.000 *
57 G -1.000 *
58 P -1.000 *
59 C -1.000 *
60 D -1.000 *
61 P -1.000 *
62 D -1.000 *
63 L -1.000 *
64 L -1.000 *
65 L -1.000 *
66 F -1.000 *
67 A -1.000 *
68 T -1.000 *
69 P -1.000 *
70 Q -1.000 *
71 A -1.000 *
72 P -1.000 *
73 R -1.000 *
74 P -1.000 *
75 T -1.000 *
76 P -1.000 *
77 S -1.000 *
78 A -1.000 *
79 P -1.000 *
80 R -1.000 *
81 P -1.000 *
82 A -1.000 *
83 L -1.000 *
84 G -1.000 *
85 R -1.000 *
86 P -1.000 *
87 P -1.000 *
88 V -1.000 *
89 K -1.000 *
90 R -1.000 *
91 R -1.000 *
92 L -1.000 *
93 D -1.000 *
94 L -1.000 *
95 E -1.000 *
96 T -0.328
97 D -0.164
98 H -0.873
99 Q -0.529
100 Y -0.818
101 L -0.717
102 A -0.436
103 E -0.800
104 S -0.562
105 S -0.624
106 G -0.533
107 P -0.505
108 A -0.463
109 R -0.636
110 G -0.548
111 R -0.723
112 G -0.695
113 R -0.639
114 H -0.753
115 P -0.376
116 G -0.701
117 K -0.556
118 G -0.455
119 V -0.399
120 K -0.730
121 S -0.641
122 P -0.424
123 G -0.596
124 E -0.650
125 K -0.300
126 S 0.004
127 R 1.111
128 Y -0.067
129 E 0.629
130 T 0.194
131 S 2.229
132 L 2.606
133 N 0.452
134 L -0.245
135 T 1.298
136 T 2.469
137 K 0.142
138 R 1.972
139 F 2.247
140 L 0.225
141 E -0.433
142 L 1.442
143 L 1.070
144 S -0.215
145 H -0.353
146 S 0.705
147 A -0.170
148 D 0.406
149 G 1.101
150 V 0.131
151 V 1.459
152 D 1.088
153 L 1.841
154 N 0.738
155 W -0.552
156 A 1.178
157 A 1.017
158 E -0.154
159 V -0.517
160 L 3.610
161 K -0.131
162 V 1.173
163 Q 0.472
164 K 2.665
165 R 2.518
166 R 2.518
167 I 1.658
168 Y 3.014
169 D 3.014
170 I 2.245
171 T 3.028
172 N 1.930
173 V 3.026
174 L 3.610
175 E 0.643
176 G 3.610
177 I 1.856
178 Q 0.325
179 L 1.393
180 I 1.428
181 A 0.088
182 K 3.610
183 K -0.018
184 S 0.077
185 K 0.869
186 N 1.616
187 H -0.151
188 I 1.545
189 Q -0.158
190 W 3.018
191 L 0.217
192 G -0.399
193 S -0.807
194 H -0.520
195 T -0.828
196 T -0.660
197 V -0.719
198 G -0.628
199 V -0.860
200 G -0.698
201 G -0.596
202 R -0.300
203 L -0.878
204 E -0.759
205 G -0.839
206 L -0.052
207 T -0.588
208 Q -0.408
209 D 0.149
210 L 0.059
211 R -0.625
212 Q -0.305
213 L 0.790
214 Q -0.541
215 E -0.563
216 S -0.571
217 E 0.779
218 Q -0.652
219 Q -0.643
220 L 0.884
221 D 1.085
222 H -0.397
223 L -0.135
224 M 0.030
225 N -0.573
226 I -0.808
227 C -0.127
228 T -0.150
229 T -0.550
230 Q -0.027
231 L 0.466
232 R -0.355
233 L -0.743
234 L 0.438
235 S -0.539
236 E -0.305
237 D -0.083
238 T -0.704
239 D -0.633
240 S -0.536
241 Q -0.517
242 R -0.576
243 L -0.308
244 A 0.233
245 Y 1.310
246 V 0.308
247 T 0.332
248 C 0.026
249 Q 0.063
250 D 2.509
251 L 1.177
252 R -0.508
253 S -0.373
254 I 0.276
255 A -0.570
256 D -0.653
257 P 0.439
258 A -0.524
259 E 0.108
260 Q 0.317
261 M 0.038
262 V 0.977
263 M 1.058
264 V 0.536
265 I 1.405
266 K 0.161
267 A 0.689
268 P 1.216
269 P -0.514
270 E 0.316
271 T 0.818
272 Q -0.360
273 L 1.174
274 Q -0.262
275 A 0.842
276 V -0.089
277 D -0.446
278 S -0.399
279 S -0.456
280 E -0.579
281 N -0.317
282 F 0.033
283 Q -0.191
284 I 1.314
285 S -0.528
286 L 0.886
287 K 0.076
288 S 1.106
289 K -0.755
290 Q -0.569
291 G 0.273
292 P 0.736
293 I 1.123
294 D -0.271
295 V 0.812
296 F 0.389
297 L 0.624
298 C 0.629
299 P -0.111
300 E -0.283
301 E -0.736
302 T -0.648
303 V -0.925
304 G -0.520
305 G -0.797
306 I -0.870
307 S -0.623
308 P -0.635
309 G -0.808
310 K -0.822
311 T -0.736
312 P -0.823
313 S -0.865
314 Q -0.747
315 E -0.779
316 V -0.843
317 T -0.773
318 S -0.754
319 E -0.799
320 E -0.779
321 E -0.776
322 N -0.905
323 R -0.863
324 A -0.848
325 T -0.840
326 D -0.814
327 S -0.910
328 A -0.777
329 T -0.943
330 I -0.870
331 V -0.920
332 S -0.763
333 P -0.621
334 P -0.795
335 P -0.669
336 S -0.797
337 S -0.830
338 P -0.647
339 P -0.789
340 S -0.898
341 S -0.796
342 L -0.989
343 T -0.872
344 T -0.891
345 D -0.870
346 P -0.763
347 S -0.760
348 Q -0.943
349 S -0.849
350 L -0.891
351 L -0.805
352 S -0.701
353 L -0.832
354 E -0.738
355 Q -0.780
356 E -0.815
357 P -0.754
358 L -0.814
359 L -0.780
360 S -0.673
361 R -0.770
362 M -0.918
363 G -0.725
364 S -0.750
365 L -0.732
366 R -0.781
367 A -0.783
368 P -0.635
369 V -0.797
370 D -0.636
371 E -0.574
372 D -0.747
373 R -0.817
374 L -0.877
375 S -0.771
376 P -0.453
377 L -0.690
378 V -0.871
379 A -0.742
380 A -0.699
381 D -0.825
382 S -0.725
383 L -0.353
384 L -0.833
385 E -0.463
386 H -0.719
387 V -0.845
388 R -0.596
389 E -0.497
390 D -0.484
391 F -0.671
392 S -0.713
393 G -0.647
394 L -0.705
395 L -0.727
396 P -0.735
397 E -0.614
398 E -0.142
399 F 0.292
400 I -0.021
401 S -0.432
402 L 0.550
403 S 0.019
404 P 0.581
405 P 0.356
406 H -0.581
407 E -0.510
408 A -0.383
409 L -0.492
410 D 0.777
411 Y 1.725
412 H -0.502
413 F 0.274
414 G -0.053
415 L 1.045
416 E 0.010
417 E -0.047
418 G -0.186
419 E 0.689
420 G 2.164
421 I 1.243
422 R 0.049
423 D 1.771
424 L 1.687
425 F 2.092
426 D 1.131
427 C 0.029
428 D 0.054
429 F 0.659
430 G -1.000 *
431 D -1.000 *
432 L -1.000 *
433 T -1.000 *
434 P -1.000 *
435 L -1.000 *
436 D -1.000 *
437 F -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 59.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MALAGAPAGG PCAPALEALL GAGALRLLDS SQIVIISAAQ DASAPPAPTG PAAPAAGPCD
70 80 90 100 110 120
PDLLLFATPQ APRPTPSAPR PALGRPPVKR RLDLETDHQY LAESSGPARG RGRHPGKGVK
130 140 150 160 170 180
SPGEKSRYET SLNLTTKRFL ELLSHSADGV VDLNWAAEVL KVQKRRIYDI TNVLEGIQLI
190 200 210 220 230 240
AKKSKNHIQW LGSHTTVGVG GRLEGLTQDL RQLQESEQQL DHLMNICTTQ LRLLSEDTDS
250 260 270 280 290 300
QRLAYVTCQD LRSIADPAEQ MVMVIKAPPE TQLQAVDSSE NFQISLKSKQ GPIDVFLCPE
310 320 330 340 350 360
ETVGGISPGK TPSQEVTSEE ENRATDSATI VSPPPSSPPS SLTTDPSQSL LSLEQEPLLS
370 380 390 400 410 420
RMGSLRAPVD EDRLSPLVAA DSLLEHVRED FSGLLPEEFI SLSPPHEALD YHFGLEEGEG
430
IRDLFDCDFG DLTPLDF
3D Structures in PDB
2AZE (X-Ray,2.55 Å resolution)
Comments
E2F1 is a transcription factor whose localization depends on the induction of differentiation. The export of E2F1 is LMB sensitive. Amino Acids 82-94 resembles NES consensus. Deletion of residues 75-100 or 100-126 causes the loss of export activity. E1F1 shares 44% sequence identity with E2F4, which has two NESs. Both NESs in E2F4 are conserved in E2F1 (aa 167-179 and aa 196-206). However, E2F1 100-437 remains nuclear. On the other hand, the NES proposed in E2F1 is not present in E2F4. Although E2F1 shuttles, it shows no binding to Impβ.
References
[1]. "A novel mechanism of E2F1 regulation via nucleocytoplasmic shuttling: determinants of nuclear import and export."
Ivanova IA, Vespa A, Dagnino L. (2007)
Cell Cycle,
6:2186-95
PubMed[2]. "Activation of p38- and CRM1-dependent nuclear export promotes E2F1 degradation during keratinocyte differentiation."
Ivanova IA, Dagnino L (2007)
Oncogene,
26:1147-54
PubMedUser Input
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
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