Transcription factor SOX-10
UniProt
Show FASTA Format
>gi|6175075|sp|P56693.1|SOX10_HUMAN RecName: Full=Transcription factor SOX-10
MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLGPDGGGGGSGLRASPGPGELGKVKKEQQDGEADDDKFPV
CIREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGK
LWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKNGKAAQGEAECPGGEAEQGGTAAIQAHYKSA
HLDHRHPGEGSPMSDGNPEHPSGQSHGPPTPPTTPKTELQSGKADPKRDGRSMGEGGKPHIDFGNVDIGE
ISHEVMSNMETFDVAELDQYLPPNGHPGHVSSYSAAGYGLGSALAVASGHSAWISKPPGVALPTVSPPGV
DAKAQVKTETAGPQGPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHSGQASG
LYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPTHWEQPVYTTLSRP
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 955224887899999899999999999999999999999999899999989875333468
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLGPDGGGGGSGLRASPGPGELGKVKKEQQD
10 20 30 40 50 60
Conf: 987789997002210001246886754476566799888998878987146899999987
Pred: CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
AA: GEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARR
70 80 90 100 110 120
Conf: 742159998761244311112210122689962799999997421689999886011026
Pred: HHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCC
AA: KLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKN
130 140 150 160 170 180
Conf: 776789888999987789832210234456678999999999999999999999999999
Pred: CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: GKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPT
190 200 210 220 230 240
Conf: 999998667789999989988999999988788886555650322047887884444679
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
AA: PPTTPKTELQSGKADPKRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMETFDVAELDQY
250 260 270 280 290 300
Conf: 999999999999999999998754456688887779999998998999988754345556
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: LPPNGHPGHVSSYSAAGYGLGSALAVASGHSAWISKPPGVALPTVSPPGVDAKAQVKTET
310 320 330 340 350 360
Conf: 899999999999998755568899998889999999998888889999998899999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: AGPQGPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHSGQASG
370 380 390 400 410 420
Conf: 7898888999888656567899999999999999998832134799
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: LYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPTHWEQPVYTTLSRP
430 440 450 460
Show Conservation Score by AL2CO
1 M -1.000 *
2 A -1.000 *
3 E -1.000 *
4 E -1.000 *
5 Q -1.000 *
6 D -1.000 *
7 L -1.000 *
8 S -1.000 *
9 E -1.000 *
10 V -1.000 *
11 E -1.000 *
12 L -1.000 *
13 S -1.000 *
14 P -1.000 *
15 V -1.000 *
16 G -1.000 *
17 S -1.000 *
18 E -1.000 *
19 E -1.000 *
20 P -1.000 *
21 R -1.000 *
22 C -1.000 *
23 L -1.000 *
24 S -1.000 *
25 P -1.000 *
26 G -1.000 *
27 S -1.000 *
28 A -1.000 *
29 P -1.000 *
30 S -1.000 *
31 L -1.000 *
32 G -1.000 *
33 P -1.000 *
34 D -1.000 *
35 G -1.000 *
36 G -1.000 *
37 G -1.000 *
38 G -1.000 *
39 G -1.000 *
40 S -1.000 *
41 G -1.000 *
42 L -1.000 *
43 R -1.000 *
44 A -1.000 *
45 S -1.000 *
46 P -1.000 *
47 G -1.000 *
48 P -1.000 *
49 G -1.000 *
50 E -1.000 *
51 L -1.000 *
52 G -1.000 *
53 K -1.000 *
54 V -1.000 *
55 K -1.000 *
56 K -1.000 *
57 E -1.000 *
58 Q -1.000 *
59 Q -1.000 *
60 D -1.000 *
61 G -1.000 *
62 E -1.000 *
63 A -1.000 *
64 D -1.000 *
65 D -1.000 *
66 D -1.000 *
67 K -0.233
68 F -1.000 *
69 P 0.214
70 V -0.556
71 C -0.366
72 I -0.169
73 R 0.058
74 E 0.250
75 A -0.099
76 V -0.078
77 S -0.137
78 Q -0.517
79 V -0.154
80 L 0.588
81 S -0.406
82 G -0.117
83 Y -0.804
84 D 0.365
85 W -0.070
86 T 0.243
87 L -0.190
88 V -0.084
89 P 0.189
90 M -0.353
91 P -0.527
92 V -0.358
93 R -0.522
94 V -0.490
95 N -0.502
96 G 0.150
97 A -0.555
98 S -0.334
99 K -0.373
100 S -0.231
101 K 0.006
102 P 0.570
103 H 1.481
104 V 3.081
105 K 2.743
106 R 3.940
107 P 4.854
108 M 2.484
109 N 2.908
110 A 1.615
111 F 2.257
112 M 2.179
113 V 2.604
114 W 2.696
115 A 2.392
116 Q 1.619
117 A 0.229
118 A 0.386
119 R 1.931
120 R 1.022
121 K 0.361
122 L 0.761
123 A -0.177
124 D -0.032
125 Q 0.052
126 Y -0.027
127 P 1.666
128 H 0.354
129 L 0.258
130 H 0.735
131 N 0.839
132 A 0.720
133 E 0.804
134 L 0.968
135 S 1.726
136 K 0.854
137 T -0.501
138 L 0.839
139 G 1.654
140 K 0.038
141 L -0.071
142 W 1.924
143 R 0.215
144 L -0.407
145 L 1.768
146 N 1.151
147 E -0.099
148 S -0.013
149 D 0.424
150 K 2.601
151 R 0.766
152 P 0.400
153 F 3.062
154 I 0.461
155 E 0.158
156 E 1.539
157 A 3.548
158 E 0.871
159 R 1.301
160 L 2.530
161 R 2.414
162 M 0.010
163 Q 0.244
164 H 5.228
165 K 0.486
166 K 0.611
167 D 1.063
168 H 2.413
169 P 5.014
170 D 2.031
171 Y 2.982
172 K 2.173
173 Y 2.512
174 Q 1.285
175 P 2.477
176 R 1.966
177 R 1.222
178 R 0.486
179 K 0.123
180 N -0.222
181 G -0.422
182 K 0.021
183 A -0.519
184 A -0.252
185 Q -0.573
186 G -0.178
187 E -0.467
188 A -0.468
189 E -0.718
190 C -0.704
191 P -0.422
192 G -0.270
193 G -0.645
194 E -0.608
195 A -0.134
196 E -0.685
197 Q -0.748
198 G -0.737
199 G -0.636
200 T -0.673
201 A -0.810
202 A -0.681
203 I -0.669
204 Q -0.741
205 A -0.470
206 H -0.831
207 Y -0.685
208 K -0.578
209 S -0.784
210 A -0.629
211 H -0.759
212 L -0.481
213 D -0.703
214 H -0.729
215 R -0.706
216 H -0.483
217 P -0.365
218 G -0.460
219 E -0.385
220 G -0.616
221 S -0.690
222 P -0.447
223 M -0.844
224 S -0.627
225 D -0.591
226 G -0.753
227 N -0.765
228 P -0.486
229 E -0.700
230 H -0.667
231 P -0.590
232 S -0.561
233 G -0.823
234 Q -0.705
235 S -0.719
236 H -0.681
237 G -0.804
238 P -0.338
239 P -0.443
240 T -0.607
241 P -0.355
242 P -0.552
243 T -0.456
244 T -0.456
245 P -0.649
246 K -0.610
247 T -0.563
248 E -0.541
249 L -0.783
250 Q -0.743
251 S -0.520
252 G -0.746
253 K -0.718
254 A -0.592
255 D -0.439
256 P -0.727
257 K -0.626
258 R -0.522
259 D -0.364
260 G -0.424
261 R -0.777
262 S -0.594
263 M -0.736
264 G -0.750
265 E -0.617
266 G -0.477
267 G -0.625
268 K -0.309
269 P -0.489
270 H -0.646
271 I -0.724
272 D -0.310
273 F -0.428
274 G -0.554
275 N -0.456
276 V -0.760
277 D -0.745
278 I -0.817
279 G -0.265
280 E -0.212
281 I -0.701
282 S -0.659
283 H -0.428
284 E -0.686
285 V -0.940
286 M -0.726
287 S -0.779
288 N -0.534
289 M -0.651
290 E -0.509
291 T -0.837
292 F -0.835
293 D -0.479
294 V -0.585
295 A -0.367
296 E -0.564
297 L -0.664
298 D -0.379
299 Q -0.678
300 Y -0.559
301 L -0.758
302 P -0.436
303 P -0.453
304 N -0.546
305 G -0.309
306 H -0.701
307 P -0.591
308 G -0.489
309 H -0.700
310 V -0.626
311 S -0.577
312 S -0.525
313 Y -0.594
314 S -0.713
315 A -0.404
316 A -0.089
317 G -0.476
318 Y -0.505
319 G -0.571
320 L -0.722
321 G -0.569
322 S -0.461
323 A -0.393
324 L -0.644
325 A -0.422
326 V -0.664
327 A -0.688
328 S -0.484
329 G -0.139
330 H -0.523
331 S -0.614
332 A -0.258
333 W -0.814
334 I -0.602
335 S -0.093
336 K -0.586
337 P -0.109
338 P -0.500
339 G -0.586
340 V -0.263
341 A -0.504
342 L -0.360
343 P -0.487
344 T -0.362
345 V -0.579
346 S -0.793
347 P -0.638
348 P -0.490
349 G -0.273
350 V -0.438
351 D -0.538
352 A -0.660
353 K -0.663
354 A -0.292
355 Q -0.199
356 V -0.532
357 K -0.643
358 T -0.523
359 E -0.563
360 T -0.454
361 A -0.782
362 G -0.612
363 P -0.353
364 Q -0.474
365 G -0.603
366 P -0.564
367 P -0.289
368 H -0.525
369 Y -0.459
370 T -0.402
371 D -0.040
372 Q -0.263
373 P -0.259
374 S -0.312
375 T -0.641
376 S -0.133
377 Q 0.425
378 I -0.377
379 A -0.472
380 Y -0.404
381 T -0.375
382 S -0.005
383 L -0.039
384 S -0.165
385 L -0.460
386 P -0.183
387 H -0.235
388 Y -0.593
389 G 0.106
390 S 0.187
391 A -0.207
392 F -0.538
393 P 0.008
394 S 0.240
395 I -0.271
396 S 0.362
397 R -0.240
398 P 0.095
399 Q 0.461
400 F -0.076
401 D -0.174
402 Y -0.454
403 S 0.229
404 D -0.194
405 H -0.253
406 Q 0.482
407 P 0.592
408 S 0.016
409 G 0.009
410 P 0.141
411 Y -0.145
412 Y 0.248
413 G 0.154
414 H -0.203
415 S 0.494
416 G 0.154
417 Q -0.212
418 A 0.223
419 S 0.482
420 G 1.199
421 L 0.654
422 Y -0.062
423 S 1.116
424 A -1.000 *
425 F 0.853
426 S 0.902
427 Y 0.133
428 M 0.380
429 G -1.000 *
430 P -1.000 *
431 S -1.000 *
432 Q -1.000 *
433 R -1.000 *
434 P -1.000 *
435 L -1.000 *
436 Y -1.000 *
437 T -1.000 *
438 A -1.000 *
439 I -1.000 *
440 S -1.000 *
441 D -1.000 *
442 P -1.000 *
443 S -1.000 *
444 P -1.000 *
445 S -1.000 *
446 G -1.000 *
447 P -1.000 *
448 Q -1.000 *
449 S -1.000 *
450 H -1.000 *
451 S -1.000 *
452 P -1.000 *
453 T -1.000 *
454 H -1.000 *
455 W -1.000 *
456 E -1.000 *
457 Q -1.000 *
458 P -1.000 *
459 V -1.000 *
460 Y -1.000 *
461 T -1.000 *
462 T -1.000 *
463 L -1.000 *
464 S -1.000 *
465 R -1.000 *
466 P -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 60.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MAEEQDLSEV ELSPVGSEEP RCLSPGSAPS LGPDGGGGGS GLRASPGPGE LGKVKKEQQD
70 80 90 100 110 120
GEADDDKFPV CIREAVSQVL SGYDWTLVPM PVRVNGASKS KPHVKRPMNA FMVWAQAARR
130 140 150 160 170 180
KLADQYPHLH NAELSKTLGK LWRLLNESDK RPFIEEAERL RMQHKKDHPD YKYQPRRRKN
190 200 210 220 230 240
GKAAQGEAEC PGGEAEQGGT AAIQAHYKSA HLDHRHPGEG SPMSDGNPEH PSGQSHGPPT
250 260 270 280 290 300
PPTTPKTELQ SGKADPKRDG RSMGEGGKPH IDFGNVDIGE ISHEVMSNME TFDVAELDQY
310 320 330 340 350 360
LPPNGHPGHV SSYSAAGYGL GSALAVASGH SAWISKPPGV ALPTVSPPGV DAKAQVKTET
370 380 390 400 410 420
AGPQGPPHYT DQPSTSQIAY TSLSLPHYGS AFPSISRPQF DYSDHQPSGP YYGHSGQASG
430 440 450 460
LYSAFSYMGP SQRPLYTAIS DPSPSGPQSH SPTHWEQPVY TTLSRP
Sox10 belongs to the Sxo protein family of transcription factors characterized by a DNA-binding and bending domain (HMG). Rehberge et al. showed that Sox10 is a shuttling protein. Its export is LMB sensitive and related to the hydrophobic sequence around 134-145. Sox10 and S0x9 share more than 50% sequence similarity. Both NLSs and NES are conserved in the two proteins.
[1]. "Sox10 is an active nucleocytoplasmic shuttle protein, and shuttling is crucial for Sox10-mediated transactivation."
Rehberg S, Lischka P, Glaser G, Stamminger T, Wegner M, Rosorius O (2002)
Mol Cell Biol,
22:5826-34
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.