Show FASTA Format
>gi|133683|sp|P22363.1|PHOSP_RABVC RecName: Full=Phosphoprotein; Short=Protein P; AltName: Full=Protein M1
MSKIFVNPSAIRAGLADLEMAEETVDLINRNIEDNQAHLQGEPIEVDNLPEDMKRLHLDDEKSSNLGEMV
RVGEGKYREDFQMDEGEDPNLLFQSYLDNVGVQIVRQMRSGERFLKIWSQTVEEIVSYVTVNFPNPPRRS
SEDKSTQTTGRELKKETTSAFSQRESQPSKARMVAQVAPGPPALEWSATNEEDDLSVEAEIAHQIAESFS
KKYKFPSRSSGIFLYNFEQLKMNLDDIVKEAKNVPGVTRLAHDGSKIPLRCVLGWVALANSKKFQLLVEA
DKLSKIMQDDLNRYTSC
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 986556926775210000023566898752012343333699532479400002442366
Pred: CCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
AA: MSKIFVNPSAIRAGLADLEMAEETVDLINRNIEDNQAHLQGEPIEVDNLPEDMKRLHLDD
10 20 30 40 50 60
Conf: 788885532114676544454457689903566777878999998863036540231024
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHH
AA: EKSSNLGEMVRVGEGKYREDFQMDEGEDPNLLFQSYLDNVGVQIVRQMRSGERFLKIWSQ
70 80 90 100 110 120
Conf: 578655210102589999998774333366445556675564356898400001235899
Pred: HHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
AA: TVEEIVSYVTVNFPNPPRRSSEDKSTQTTGRELKKETTSAFSQRESQPSKARMVAQVAPG
130 140 150 160 170 180
Conf: 998888778745442135677888864201234799887620122111113574789986
Pred: CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
AA: PPALEWSATNEEDDLSVEAEIAHQIAESFSKKYKFPSRSSGIFLYNFEQLKMNLDDIVKE
190 200 210 220 230 240
Conf: 228998101001499876200200220356742113014124545667543210059
Pred: HCCCCCCHHHHCCCCCCCCCEEHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCC
AA: AKNVPGVTRLAHDGSKIPLRCVLGWVALANSKKFQLLVEADKLSKIMQDDLNRYTSC
250 260 270 280 290
Show Conservation Score by AL2CO
1 M 1.518
2 S 0.901
3 K 0.901
4 I -0.915
5 F 0.201
6 V 0.223
7 N -0.167
8 P 1.518
9 S 0.904
10 A -0.243
11 I 0.268
12 R 0.898
13 A 0.646
14 G 1.518
15 L -0.084
16 A -0.128
17 D -0.061
18 L 0.686
19 E 1.518
20 M 1.518
21 A 1.518
22 E 0.720
23 E 0.409
24 T 1.518
25 V -0.620
26 D 0.409
27 L 0.901
28 I 0.214
29 N -0.473
30 R -0.102
31 N 0.625
32 I -0.170
33 E -0.573
34 D 0.168
35 N -0.105
36 Q 1.518
37 A 1.518
38 H 1.518
39 L 1.518
40 Q 0.429
41 G 0.169
42 E -0.298
43 P 1.518
44 I 0.198
45 E -0.492
46 V 0.831
47 D 0.289
48 N -0.436
49 L 1.518
50 P 0.986
51 E 0.490
52 D -0.222
53 M -0.519
54 K -0.663
55 R -0.047
56 L 0.363
57 H -0.902
58 L 0.605
59 D -1.438
60 D -0.072
61 E -1.915
62 K -1.085
63 S -1.529
64 S -1.511
65 N -1.593
66 L -1.276
67 G -1.775
68 E -1.487
69 M -1.572
70 V -1.252
71 R -1.891
72 V -1.589
73 G -1.143
74 E 0.056
75 G -1.302
76 K -1.108
77 Y -1.224
78 R -1.250
79 E 0.224
80 D 0.709
81 F -0.098
82 Q -0.643
83 M -0.565
84 D -1.413
85 E -0.721
86 G -0.886
87 E -0.999
88 D 0.848
89 P 0.554
90 N -1.473
91 L -0.755
92 L -0.814
93 F 0.315
94 Q 0.986
95 S -0.813
96 Y 0.161
97 L 1.518
98 D 0.768
99 N -0.871
100 V -0.385
101 G 1.518
102 V -0.962
103 Q -0.330
104 I -0.470
105 V 0.154
106 R 0.191
107 Q 0.069
108 M 0.676
109 R 0.633
110 S 0.163
111 G 1.518
112 E 0.315
113 R 0.140
114 F 0.831
115 L 0.140
116 K 0.805
117 I 0.387
118 W 0.986
119 S 0.435
120 Q -1.048
121 T -0.907
122 V -0.179
123 E 0.037
124 E -0.104
125 I 1.518
126 V -0.461
127 S 0.270
128 Y 0.975
129 V 0.986
130 T -0.970
131 V -0.737
132 N -0.010
133 F -0.028
134 P -0.856
135 N -1.892
136 P -1.319
137 P -1.514
138 R -1.270
139 R -0.267
140 S -1.466
141 S -0.990
142 E -0.620
143 D -0.437
144 K 0.315
145 S -0.459
146 T -0.017
147 Q 1.518
148 T 0.542
149 T -1.163
150 G -1.547
151 R -1.310
152 E -1.507
153 L -1.234
154 K -1.086
155 K -0.989
156 E -1.527
157 T -1.233
158 T -1.575
159 S -1.166
160 A -1.551
161 F -1.707
162 S -1.489
163 Q -1.735
164 R -1.218
165 E -1.192
166 S -1.328
167 Q -1.200
168 P -0.946
169 S -0.550
170 K -1.058
171 A -1.411
172 R -1.141
173 M -1.711
174 V -1.768
175 A -1.285
176 Q -0.905
177 V -1.403
178 A -1.334
179 P -0.644
180 G -0.600
181 P -0.758
182 P -0.987
183 A -1.070
184 L -0.867
185 E -0.535
186 W -0.770
187 S -0.374
188 A -1.185
189 T -0.682
190 N -0.793
191 E -0.441
192 E -0.344
193 D 0.251
194 D -0.997
195 L -1.337
196 S -0.090
197 V -0.059
198 E 0.804
199 A 0.257
200 E 0.987
201 I 0.666
202 A 0.559
203 H 0.986
204 Q 1.518
205 I 0.603
206 A 0.975
207 E 0.985
208 S 1.518
209 F 0.976
210 S 0.975
211 K 0.986
212 K 0.983
213 Y 0.986
214 K 0.985
215 F 1.518
216 P 0.986
217 S 1.518
218 R 0.956
219 S 1.518
220 S 1.518
221 G 1.518
222 I 1.518
223 F 0.965
224 L 1.518
225 Y 0.221
226 N 1.518
227 F 0.958
228 E 1.518
229 Q 0.956
230 L 1.518
231 K 0.958
232 M 0.510
233 N 1.518
234 L 0.950
235 D 1.518
236 D 0.939
237 I 1.518
238 V 1.518
239 K -0.336
240 E -0.483
241 A 0.185
242 K -0.478
243 N -0.731
244 V 0.617
245 P 1.518
246 G 0.804
247 V 0.640
248 T -1.127
249 R -1.055
250 L -0.693
251 A 0.421
252 H -1.148
253 D -0.531
254 G 0.757
255 S -1.116
256 K -0.068
257 I 0.856
258 P 1.518
259 L 1.518
260 R 1.518
261 C 0.891
262 V 0.129
263 L 1.518
264 G 0.898
265 W -0.547
266 V 1.518
267 A 0.138
268 L 0.644
269 A -1.315
270 N -0.725
271 S 1.518
272 K 0.736
273 K 0.616
274 F 1.518
275 Q -0.132
276 L -0.343
277 L 0.898
278 V 0.625
279 E -0.251
280 A -0.829
281 D -0.046
282 K 0.756
283 L -0.408
284 S -0.551
285 K -0.111
286 I 0.110
287 M 0.663
288 Q 0.898
289 D -0.091
290 D 0.901
291 L 0.211
292 N 0.317
293 R -0.516
294 Y 1.518
295 T -1.143
296 S 0.094
297 C -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 63.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MSKIFVNPSA IRAGLADLEM AEETVDLINR NIEDNQAHLQ GEPIEVDNLP EDMKRLHLDD
70 80 90 100 110 120
EKSSNLGEMV RVGEGKYRED FQMDEGEDPN LLFQSYLDNV GVQIVRQMRS GERFLKIWSQ
130 140 150 160 170 180
TVEEIVSYVT VNFPNPPRRS SEDKSTQTTG RELKKETTSA FSQRESQPSK ARMVAQVAPG
190 200 210 220 230 240
PPALEWSATN EEDDLSVEAE IAHQIAESFS KKYKFPSRSS GIFLYNFEQL KMNLDDIVKE
250 260 270 280 290
AKNVPGVTRL AHDGSKIPLR CVLGWVALAN SKKFQLLVEA DKLSKIMQDD LNRYTSC
Rabies P protein is a non-catalytic cofactor and a regulatory protein like the VSV P protein. It has five isoforms. It has both NLS and NES.
[1]. "Nucleocytoplasmic shuttling of the rabies virus P protein requires a nuclear localization signal and a CRM1-dependent nuclear export signal."
Pasdeloup D, Poisson N, Raux H, Gaudin Y, Ruigrok RW, Blondel D. (2005)
Virology,
334:284-93
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.