Show FASTA Format
>gi|238054268|sp|Q04360.2|EB2_EBVB9 RecName: Full=mRNA export factor EB2; AltName: Full=Mta; AltName: Full=Protein SM
MVPSQRLSRTSSISSNEDPAESHILELEAVSDTNTDCDLDPMEGSEEHSTDGEISSSEEEDEDPTPAHAI
PARPSSVVITPTSASFVIPRKKWDLQDKTVTLHRSPLCRDEDEKEETGNSSYTRGHKRRRGEVHGCTDES
YGKRRHLPPGARAPRAPRAPRVPRAPRSPRAPRSNRATRGPRSESRGAGRSTRKQARQERSQRPLPNKPW
FDMSLVKPVSKITFVTLPSPLASLTLEPIQDPFLQSMLAVAAHPEIGAWQKVQPRHELRRSYKTLREFFT
KSTNKDTWLDARMQAIQNAGLCTLVAMLEETIFWLQEITYHGDLPLAPAEDILLACAMSLSKVILTKLKE
LAPCFLPNTRDYNFVKQLFYITCATARQNKVVETLSSSYVKQPLCLLAAYAAVAPAYINANCRRRHDEVE
FLGHYIKNYNPGTLSSLLTEAVETHTRDCRSASCSRLVRAILSPGTGSLGLFFVPGLNQ
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 986322223445788999753000124331046898999999999887888888999888
Pred: CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MVPSQRLSRTSSISSNEDPAESHILELEAVSDTNTDCDLDPMEGSEEHSTDGEISSSEEE
10 20 30 40 50 60
Conf: 889999988999999864489998533567655778755423579888885321224899
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: DEDPTPAHAIPARPSSVVITPTSASFVIPRKKWDLQDKTVTLHRSPLCRDEDEKEETGNS
70 80 90 100 110 120
Conf: 876788766787545446899999999999999999999999999999999999989899
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: SYTRGHKRRRGEVHGCTDESYGKRRHLPPGARAPRAPRAPRVPRAPRSPRAPRSNRATRG
130 140 150 160 170 180
Conf: 999887668754022211002799999987755665678864111137998887766456
Pred: CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
AA: PRSESRGAGRSTRKQARQERSQRPLPNKPWFDMSLVKPVSKITFVTLPSPLASLTLEPIQ
190 200 210 220 230 240
Conf: 715689999835999665666552677884389887886056517899999999996231
Pred: CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
AA: DPFLQSMLAVAAHPEIGAWQKVQPRHELRRSYKTLREFFTKSTNKDTWLDARMQAIQNAG
250 260 270 280 290 300
Conf: 999999679689999999981999999887835542599999999740014442368986
Pred: HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
AA: LCTLVAMLEETIFWLQEITYHGDLPLAPAEDILLACAMSLSKVILTKLKELAPCFLPNTR
310 320 330 340 350 360
Conf: 444687889998501228999998510356633688989999766664422114676300
Pred: CHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH
AA: DYNFVKQLFYITCATARQNKVVETLSSSYVKQPLCLLAAYAAVAPAYINANCRRRHDEVE
370 380 390 400 410 420
Conf: 34442102685245657999999974128832123300000026988731043048999
Pred: HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCEEECCCCCC
AA: FLGHYIKNYNPGTLSSLLTEAVETHTRDCRSASCSRLVRAILSPGTGSLGLFFVPGLNQ
430 440 450 460 470
Show Conservation Score by AL2CO
1 M -1.000 *
2 V -1.000 *
3 P -1.000 *
4 S -1.000 *
5 Q -1.000 *
6 R -1.000 *
7 L -1.000 *
8 S -1.000 *
9 R -1.000 *
10 T -1.000 *
11 S -1.000 *
12 S -1.000 *
13 I -1.000 *
14 S -1.000 *
15 S -1.000 *
16 N -1.000 *
17 E -1.000 *
18 D -1.000 *
19 P -1.000 *
20 A -1.000 *
21 E -1.000 *
22 S -1.000 *
23 H -1.000 *
24 I -1.000 *
25 L -1.000 *
26 E -1.000 *
27 L -1.000 *
28 E -1.000 *
29 A -1.000 *
30 V -1.000 *
31 S -1.000 *
32 D -1.000 *
33 T -1.000 *
34 N -1.000 *
35 T -1.000 *
36 D -1.000 *
37 C -1.000 *
38 D -1.000 *
39 L -1.000 *
40 D -1.000 *
41 P -1.000 *
42 M -1.000 *
43 E -1.000 *
44 G -1.000 *
45 S -1.000 *
46 E -1.000 *
47 E -1.000 *
48 H -1.000 *
49 S -1.000 *
50 T -1.000 *
51 D -1.000 *
52 G -1.000 *
53 E -1.000 *
54 I -1.000 *
55 S -1.000 *
56 S -1.000 *
57 S -1.000 *
58 E -1.000 *
59 E -1.000 *
60 E -1.000 *
61 D -1.000 *
62 E -1.000 *
63 D -1.000 *
64 P 0.058
65 T 0.496
66 P -1.000 *
67 A -1.000 *
68 H -1.000 *
69 A -1.000 *
70 I -1.000 *
71 P -1.000 *
72 A -1.000 *
73 R -1.000 *
74 P -1.000 *
75 S -1.000 *
76 S -1.000 *
77 V -1.000 *
78 V -1.000 *
79 I -1.000 *
80 T -1.000 *
81 P -1.000 *
82 T -1.000 *
83 S 0.086
84 A -0.290
85 S -1.000 *
86 F -1.000 *
87 V -1.000 *
88 I -1.000 *
89 P 1.310
90 R 0.944
91 K 0.519
92 K 0.418
93 W 0.429
94 D -1.000 *
95 L -1.000 *
96 Q -1.000 *
97 D -0.448
98 K -0.336
99 T 0.047
100 V -0.084
101 T -1.000 *
102 L -0.330
103 H 0.625
104 R -0.049
105 S 2.277
106 P 2.538
107 L 1.649
108 C -1.000 *
109 R -1.000 *
110 D -1.000 *
111 E -1.000 *
112 D -1.000 *
113 E -1.000 *
114 K -1.000 *
115 E -1.000 *
116 E -1.000 *
117 T -1.000 *
118 G -1.000 *
119 N -1.000 *
120 S 0.969
121 S 0.565
122 Y -0.628
123 T -0.254
124 R -1.000 *
125 G -1.000 *
126 H -1.000 *
127 K -1.000 *
128 R -1.000 *
129 R -0.486
130 R 0.449
131 G -1.000 *
132 E -1.000 *
133 V -1.000 *
134 H -0.847
135 G -0.139
136 C -0.130
137 T -0.991
138 D -0.054
139 E -0.578
140 S -0.218
141 Y -0.309
142 G 0.407
143 K -0.337
144 R 0.327
145 R -0.150
146 H 0.231
147 L -1.465
148 P -0.452
149 P 1.300
150 G -1.007
151 A -0.528
152 R 1.534
153 A -0.965
154 P -0.052
155 R -0.151
156 A -0.571
157 P -0.089
158 R -0.427
159 A -0.010
160 P -0.418
161 R 0.273
162 V -0.784
163 P -0.720
164 R 0.279
165 A -0.698
166 P 0.117
167 R -0.586
168 S 0.161
169 P -0.829
170 R -0.718
171 A -0.707
172 P 0.287
173 R -0.191
174 S -0.540
175 N -1.126
176 R -1.023
177 A -1.456
178 T -1.669
179 R 0.006
180 G -0.597
181 P -0.665
182 R -0.738
183 S -1.008
184 E -0.972
185 S -1.476
186 R -0.922
187 G -0.923
188 A -0.788
189 G -0.990
190 R -0.844
191 S -0.278
192 T -0.916
193 R -0.341
194 K -0.705
195 Q -1.366
196 A -1.488
197 R -0.757
198 Q -1.125
199 E -1.103
200 R -1.343
201 S -0.918
202 Q -1.514
203 R -0.603
204 P -0.825
205 L -0.576
206 P -0.190
207 N -0.930
208 K 0.465
209 P 0.374
210 W -0.531
211 F -0.310
212 D -0.032
213 M -1.719
214 S -0.267
215 L -0.336
216 V -0.252
217 K -0.371
218 P -0.442
219 V -0.918
220 S -0.205
221 K -0.968
222 I -1.128
223 T -1.383
224 F -0.707
225 V -0.893
226 T -0.927
227 L -0.065
228 P -0.941
229 S 0.186
230 P 0.058
231 L -0.452
232 A 0.134
233 S -0.947
234 L -1.115
235 T -0.985
236 L -0.127
237 E 0.610
238 P -0.686
239 I -0.674
240 Q -0.663
241 D 0.741
242 P -0.490
243 F -0.569
244 L -0.432
245 Q -1.176
246 S 0.118
247 M -0.533
248 L -0.192
249 A -1.159
250 V -0.909
251 A 1.136
252 A 0.090
253 H -0.653
254 P -0.664
255 E -0.634
256 I -1.129
257 G -0.460
258 A -0.093
259 W -1.106
260 Q -0.288
261 K 0.470
262 V -0.318
263 Q -0.991
264 P -0.224
265 R -1.218
266 H -0.419
267 E -0.588
268 L 0.409
269 R -1.268
270 R -0.264
271 S -0.710
272 Y 0.749
273 K -0.412
274 T -0.336
275 L 1.559
276 R -0.256
277 E -0.314
278 F 2.686
279 F -0.257
280 T -0.929
281 K -0.270
282 S -0.229
283 T -0.529
284 N 2.099
285 K -0.221
286 D -0.964
287 T -0.528
288 W 1.614
289 L 0.270
290 D -0.424
291 A 0.164
292 R 3.365
293 M -0.472
294 Q -0.697
295 A 0.758
296 I 0.487
297 Q -0.652
298 N 0.333
299 A -0.198
300 G 2.223
301 L 1.739
302 C -0.703
303 T -0.266
304 L 0.615
305 V -0.245
306 A 0.949
307 M 0.881
308 L 0.968
309 E 2.061
310 E 3.365
311 T -0.638
312 I 0.916
313 F -0.575
314 W 3.365
315 L 0.505
316 Q 1.525
317 E -0.626
318 I -0.319
319 T 0.141
320 Y -1.025
321 H 0.208
322 G -0.316
323 D -0.575
324 L 0.213
325 P -0.246
326 L -0.492
327 A -0.038
328 P -0.399
329 A -0.581
330 E -0.549
331 D 3.365
332 I 1.565
333 L 1.798
334 L 0.939
335 A -0.043
336 C 0.445
337 A 1.040
338 M -1.012
339 S -0.620
340 L 0.987
341 S 1.260
342 K -0.820
343 V -0.220
344 I 0.930
345 L -0.599
346 T -0.847
347 K 2.211
348 L 1.226
349 K 0.333
350 E -0.309
351 L 0.557
352 A 0.444
353 P -0.291
354 C 3.365
355 F 0.187
356 L 0.719
357 P -0.167
358 N -0.545
359 T -0.635
360 R -0.710
361 D -1.017
362 Y -1.074
363 N -0.360
364 F -0.500
365 V 0.997
366 K 1.032
367 Q -0.159
368 L 0.984
369 F -0.250
370 Y 0.746
371 I -0.046
372 T 0.809
373 C 1.117
374 A -0.698
375 T -0.525
376 A -0.008
377 R 1.188
378 Q 0.300
379 N -0.964
380 K -0.433
381 V 1.054
382 V -0.491
383 E -0.736
384 T 0.613
385 L 0.540
386 S -0.347
387 S 0.167
388 S 0.367
389 Y -0.280
390 V -0.177
391 K -0.301
392 Q -0.253
393 P 0.545
394 L 0.225
395 C -0.143
396 L 0.703
397 L 1.243
398 A 0.593
399 A -0.125
400 Y 1.540
401 A 0.611
402 A 0.128
403 V 0.561
404 A -0.461
405 P 1.539
406 A 0.997
407 Y -0.483
408 I 1.042
409 N -0.534
410 A -1.009
411 N -0.931
412 C -0.207
413 R 0.338
414 R -0.799
415 R -0.496
416 H -0.994
417 D -0.985
418 E -0.783
419 V -0.021
420 E -0.721
421 F -0.166
422 L -0.626
423 G -0.495
424 H -1.013
425 Y -0.505
426 I 0.712
427 K -0.536
428 N -0.941
429 Y 2.696
430 N -0.747
431 P 3.365
432 G 3.365
433 T 0.453
434 L 0.918
435 S -0.577
436 S 0.546
437 L 1.137
438 L 1.119
439 T -0.171
440 E -0.235
441 A 0.179
442 V 0.854
443 E -0.174
444 T -0.718
445 H 2.704
446 T -1.373
447 R -0.530
448 D -0.688
449 C 2.041
450 R -0.217
451 S 0.515
452 A -0.940
453 S -0.605
454 C 3.365
455 S -0.970
456 R -0.501
457 L -0.078
458 V 0.084
459 R -0.068
460 A 0.426
461 I 0.174
462 L 0.522
463 S 0.189
464 P 1.015
465 G -0.830
466 T -0.624
467 G -0.347
468 S 1.341
469 L 0.502
470 G 3.365
471 L 1.827
472 F 2.282
473 F 3.365
474 V 0.094
475 P -1.000 *
476 G -1.000 *
477 L -1.000 *
478 N -1.000 *
479 Q -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 71.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MVPSQRLSRT SSISSNEDPA ESHILELEAV SDTNTDCDLD PMEGSEEHST DGEISSSEEE
70 80 90 100 110 120
DEDPTPAHAI PARPSSVVIT PTSASFVIPR KKWDLQDKTV TLHRSPLCRD EDEKEETGNS
130 140 150 160 170 180
SYTRGHKRRR GEVHGCTDES YGKRRHLPPG ARAPRAPRAP RVPRAPRSPR APRSNRATRG
190 200 210 220 230 240
PRSESRGAGR STRKQARQER SQRPLPNKPW FDMSLVKPVS KITFVTLPSP LASLTLEPIQ
250 260 270 280 290 300
DPFLQSMLAV AAHPEIGAWQ KVQPRHELRR SYKTLREFFT KSTNKDTWLD ARMQAIQNAG
310 320 330 340 350 360
LCTLVAMLEE TIFWLQEITY HGDLPLAPAE DILLACAMSL SKVILTKLKE LAPCFLPNTR
370 380 390 400 410 420
DYNFVKQLFY ITCATARQNK VVETLSSSYV KQPLCLLAAY AAVAPAYINA NCRRRHDEVE
430 440 450 460 470
FLGHYIKNYN PGTLSSLLTE AVETHTRDCR SASCSRLVRA ILSPGTGSLG LFFVPGLNQ
Mta is a regulatory protein that controls the lytic gene expression in Epstein-Bar virus. Mta has been shown to shuttle between the nucleus and the cytoplasm in heterokaryon assays. Chen et al. identified two consecutive putative NES in Mta (residues 227-236, and 218-227). Only deletion of the two NES regions and simultaneous mutations of both NES can abolish the shuttling. They further showed that both the aa 177-185 and aa 186-195 motifs were independently capable of conferring a cytoplasmic export function to a nuclear protein (GFP-NLS-PK). The export is sensitive to LMB treatment. The mutant NES are unable to mediate cytoplasmic accumulation of unspliced mRNA.
[1]. "Properties of two EBV Mta nuclear export signal sequences"
Chen, L., Liao, G., Fujimuro, M., Semmes, O.J., Hayward, S.D. (2001)
Virology,
288:119-128
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.