Summary for Spc27 (NES ID: 72)
Full Name
Spindle pole component SPC72
UniProt
Alternative Names
None
Organism
Saccharomyces cerevisiae (Baker's yeast)
Experimental Evidence for CRM1-mediated Export
Mutations That Affect Nuclear Export
Mutations That Affect CRM1 Binding
Functional Export Signals
Secondary Structure of Export Signal
Unknown
Other Residues Important for Export
Unknown
Sequence
Show FASTA Format
>gi|341942060|sp|P39723.2|SPC72_YEAST RecName: Full=Spindle pole component SPC72
MVRRWIPSGRHLRNNDNTGDDDDSEFTNSMDSGMSIPSLRDSMTTRSSHNDPIKPALMNDSNKVKNLEKE
LTNAKIKIQVLYEYIRRIPNKDGNAPSLGNDTDFRNSIIEGLNLEINKLKQDLKAKEVEYQDTLQFVQEN
LENSESIVNTINHLLSFILTHFNEQDENAHLLDKEERETLEETLELSSDYVLEKMDTLSKFIIQFLQDFL
HSKSRAESKQDKEEFLSLAQSSPAGSQLESRDSPSSKEENTDGGYQNDEIHDSNNHIDTENVMANSTSLP
ISAVESRFEKTLDTQLEIVIENLHKEYDQFINSIRLKFEKSQKLEKIIASKLNEQSHLLDSLELEENSSS
VIEKQDHLISQLKEKIESQSVLINNLEKLKEDIIKMKQNEKVLTKELETQTKINKLKENNWDSYINDLEK
QINDLQIDKSEEFHVIQNQLDKLDLENYQLKNQLNTLDNQKLILSQYESNFIKFNQNLLLHLDSIFNILQ
KILQESSIAQFDRKMKSIKSVPNALKNLNLIQPKLESLYTFIETALESIINSYISSLISMETPEQPHQQG
NELTATPNKELTLRIEELQRRWISERERRKLDANASEARIKALEQENESLRSKLFNLSINNP
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 963236998532356888999987556788878887544446576788999888876578
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MVRRWIPSGRHLRNNDNTGDDDDSEFTNSMDSGMSIPSLRDSMTTRSSHNDPIKPALMND
10 20 30 40 50 60
Conf: 067886998778999999999999984179999999999874554556554456678777
Pred: CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AA: SNKVKNLEKELTNAKIKIQVLYEYIRRIPNKDGNAPSLGNDTDFRNSIIEGLNLEINKLK
70 80 90 100 110 120
Conf: 666666656898999999885404879860999999999520011110047997889989
Pred: HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
AA: QDLKAKEVEYQDTLQFVQENLENSESIVNTINHLLSFILTHFNEQDENAHLLDKEERETL
130 140 150 160 170 180
Conf: 998735824699988568899999997531000111002447888653126988875445
Pred: HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHCCCCCCCCCCC
AA: EETLELSSDYVLEKMDTLSKFIIQFLQDFLHSKSRAESKQDKEEFLSLAQSSPAGSQLES
190 200 210 220 230 240
Conf: 789996445777898762111357752226654116766632110000004350889999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
AA: RDSPSSKEENTDGGYQNDEIHDSNNHIDTENVMANSTSLPISAVESRFEKTLDTQLEIVI
250 260 270 280 290 300
Conf: 999898999999999976764999999997776678787768874313147766666555
Pred: HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
AA: ENLHKEYDQFINSIRLKFEKSQKLEKIIASKLNEQSHLLDSLELEENSSSVIEKQDHLIS
310 320 330 340 350 360
Conf: 566677777788776776678899875666777776766899866533105786886999
Pred: HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: QLKEKIESQSVLINNLEKLKEDIIKMKQNEKVLTKELETQTKINKLKENNWDSYINDLEK
370 380 390 400 410 420
Conf: 874530133145789999887753420999999965212334455743455536888999
Pred: HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: QINDLQIDKSEEFHVIQNQLDKLDLENYQLKNQLNTLDNQKLILSQYESNFIKFNQNLLL
430 440 450 460 470 480
Conf: 999999999996403006889987864411046642223231447989999999999999
Pred: HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: HLDSIFNILQKILQESSIAQFDRKMKSIKSVPNALKNLNLIQPKLESLYTFIETALESII
490 500 510 520 530 540
Conf: 999995416789888777798554455211211089999865666753101100345677
Pred: HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHH
AA: NSYISSLISMETPEQPHQQGNELTATPNKELTLRIEELQRRWISERERRKLDANASEARI
550 560 570 580 590 600
Conf: 7666555556554530246899
Pred: HHHHHHHHHHHHHHHHCCCCCC
AA: KALEQENESLRSKLFNLSINNP
610 620
Show Conservation Score by AL2CO
1 M -1.000 *
2 V -1.000 *
3 R -1.000 *
4 R -1.000 *
5 W -1.000 *
6 I -1.000 *
7 P -1.000 *
8 S -1.000 *
9 G -1.000 *
10 R -1.000 *
11 H -1.000 *
12 L -1.000 *
13 R -1.000 *
14 N -1.000 *
15 N -1.000 *
16 D -1.000 *
17 N -1.000 *
18 T -1.000 *
19 G -1.000 *
20 D -1.000 *
21 D -1.000 *
22 D -1.000 *
23 D -1.000 *
24 S -1.000 *
25 E -1.000 *
26 F -1.000 *
27 T -1.000 *
28 N -1.000 *
29 S -1.000 *
30 M -1.000 *
31 D -1.000 *
32 S -1.000 *
33 G -1.000 *
34 M -1.000 *
35 S -1.000 *
36 I -1.000 *
37 P -1.000 *
38 S -1.000 *
39 L -1.000 *
40 R -1.000 *
41 D -1.000 *
42 S -1.000 *
43 M -1.000 *
44 T -1.000 *
45 T -1.000 *
46 R -1.000 *
47 S -1.000 *
48 S -1.000 *
49 H -1.000 *
50 N -1.000 *
51 D -1.000 *
52 P -1.000 *
53 I -1.000 *
54 K -1.000 *
55 P -1.000 *
56 A -0.093
57 L 0.061
58 M -0.191
59 N 1.131
60 D 0.670
61 S 0.433
62 N 0.559
63 K 1.241
64 V 0.863
65 K 1.523
66 N -0.544
67 L 2.780
68 E -0.182
69 K 1.632
70 E 1.484
71 L 1.587
72 T 0.651
73 N -0.180
74 A 1.865
75 K 3.590
76 I 1.312
77 K 1.761
78 I 1.016
79 Q 0.514
80 V 0.867
81 L 3.297
82 Y 0.114
83 E 2.395
84 Y 0.003
85 I 1.465
86 R 0.930
87 R 1.056
88 I 0.148
89 P 0.120
90 N -0.260
91 K -1.039
92 D -0.342
93 G -0.227
94 N -0.241
95 A -0.710
96 P -0.512
97 S -0.447
98 L -0.997
99 G -0.477
100 N -0.441
101 D -0.535
102 T -0.869
103 D -1.244
104 F -0.469
105 R -0.949
106 N -0.312
107 S -0.369
108 I -0.597
109 I 1.051
110 E 0.792
111 G -0.205
112 L 0.594
113 N -0.454
114 L -0.583
115 E 0.383
116 I 1.011
117 N -1.311
118 K -0.235
119 L 3.043
120 K 0.019
121 Q -0.576
122 D -0.152
123 L 1.527
124 K -0.813
125 A -0.892
126 K -0.966
127 E 0.124
128 V -0.651
129 E 0.087
130 Y -0.682
131 Q -0.322
132 D -0.339
133 T -0.164
134 L 1.029
135 Q 0.091
136 F -0.152
137 V -0.795
138 Q -0.587
139 E 0.452
140 N -0.739
141 L 1.106
142 E -0.334
143 N -0.134
144 S -0.428
145 E 0.723
146 S -1.199
147 I -0.798
148 V -0.681
149 N -0.327
150 T -0.517
151 I 0.559
152 N 0.232
153 H -0.607
154 L 0.310
155 L 0.832
156 S -1.007
157 F -0.573
158 I 0.670
159 L -0.118
160 T -1.012
161 H -1.035
162 F -0.327
163 N -0.074
164 E -0.178
165 Q -0.878
166 D -0.806
167 E -0.379
168 N -0.268
169 A -0.782
170 H -0.718
171 L -0.224
172 L 1.192
173 D -0.536
174 K -1.413
175 E -0.083
176 E -0.063
177 R 0.157
178 E 0.240
179 T -0.610
180 L 0.918
181 E -1.113
182 E 0.003
183 T -0.253
184 L -0.946
185 E -0.119
186 L -0.546
187 S -0.535
188 S -0.752
189 D 0.116
190 Y 0.237
191 V 0.416
192 L 0.109
193 E 0.014
194 K -0.471
195 M 0.109
196 D 0.475
197 T -0.611
198 L 2.353
199 S -0.498
200 K -0.173
201 F -0.566
202 I 0.149
203 I -0.784
204 Q -0.691
205 F -0.577
206 L -0.515
207 Q -0.878
208 D -0.558
209 F -0.434
210 L 0.442
211 H -0.898
212 S -1.073
213 K -0.850
214 S -1.049
215 R -1.465
216 A -1.420
217 E -0.212
218 S -1.018
219 K -0.527
220 Q -1.113
221 D -0.643
222 K -0.093
223 E -1.177
224 E -0.814
225 F -0.969
226 L -1.285
227 S -0.625
228 L -0.909
229 A -0.075
230 Q -0.688
231 S -0.796
232 S -0.968
233 P -0.967
234 A -0.401
235 G -1.445
236 S -1.070
237 Q -0.891
238 L -1.213
239 E -0.239
240 S -1.017
241 R -0.950
242 D -0.914
243 S -0.466
244 P -1.307
245 S -0.503
246 S -1.313
247 K -0.441
248 E -1.200
249 E -0.824
250 N -1.282
251 T -1.238
252 D -0.113
253 G -1.393
254 G -0.963
255 Y -1.096
256 Q -0.787
257 N -0.018
258 D -0.710
259 E -0.276
260 I -0.399
261 H -0.634
262 D -0.449
263 S -0.338
264 N -1.087
265 N -0.234
266 H -0.245
267 I -0.821
268 D -1.667
269 T -0.523
270 E -0.552
271 N -0.072
272 V -0.925
273 M -0.605
274 A -0.715
275 N 0.326
276 S -0.006
277 T -0.393
278 S -0.717
279 L -0.144
280 P -0.984
281 I -1.229
282 S -1.105
283 A -0.860
284 V -1.537
285 E -1.118
286 S -0.256
287 R -0.844
288 F -1.194
289 E 0.089
290 K -0.300
291 T -0.904
292 L 1.333
293 D 0.899
294 T 0.470
295 Q 0.197
296 L 0.087
297 E 1.974
298 I -0.542
299 V -0.806
300 I 2.132
301 E 0.573
302 N -0.542
303 L 0.946
304 H 1.065
305 K -0.108
306 E 1.582
307 Y 0.026
308 D 1.064
309 Q -0.216
310 F 0.562
311 I -0.039
312 N 0.339
313 S -0.227
314 I 0.997
315 R 0.626
316 L -1.018
317 K 1.455
318 F -0.117
319 E 0.056
320 K -0.270
321 S -0.237
322 Q -0.179
323 K -1.088
324 L 0.088
325 E 1.212
326 K -0.296
327 I -0.511
328 I 2.437
329 A -1.029
330 S -0.712
331 K 2.011
332 L -0.131
333 N -0.936
334 E -0.038
335 Q 1.132
336 S -0.922
337 H -0.791
338 L -0.173
339 L 0.348
340 D -0.255
341 S -0.275
342 L 0.433
343 E -0.229
344 L 0.191
345 E -0.222
346 E -0.915
347 N -0.603
348 S -1.131
349 S -0.369
350 S -0.167
351 V -0.591
352 I -0.678
353 E -0.228
354 K -0.330
355 Q -0.201
356 D -0.628
357 H -1.022
358 L -0.652
359 I 0.174
360 S -0.158
361 Q -0.858
362 L 1.061
363 K 0.358
364 E -0.650
365 K -0.301
366 I -0.091
367 E -0.375
368 S -0.337
369 Q -0.216
370 S -0.864
371 V -0.756
372 L -0.714
373 I 0.016
374 N -0.962
375 N -0.665
376 L 0.579
377 E -0.014
378 K -0.768
379 L -0.095
380 K -0.413
381 E -0.042
382 D -0.459
383 I -0.385
384 I -0.593
385 K -0.523
386 M -0.263
387 K -0.343
388 Q -0.453
389 N -0.086
390 E -1.104
391 K -0.436
392 V -0.752
393 L 1.104
394 T -0.355
395 K 0.233
396 E 0.614
397 L 0.751
398 E -0.844
399 T -0.138
400 Q -0.477
401 T -0.414
402 K 0.083
403 I -0.343
404 N -1.350
405 K 0.205
406 L -0.125
407 K -0.137
408 E 0.557
409 N -0.573
410 N -0.263
411 W 0.638
412 D -0.736
413 S -0.297
414 Y -0.397
415 I -0.248
416 N -0.833
417 D 0.352
418 L 1.777
419 E 0.050
420 K -0.538
421 Q -0.339
422 I 0.464
423 N -0.662
424 D -0.631
425 L 0.318
426 Q -0.154
427 I -0.493
428 D -0.334
429 K -0.422
430 S -0.224
431 E -0.344
432 E 0.446
433 F -1.141
434 H -0.976
435 V -1.340
436 I 0.995
437 Q 0.190
438 N -0.699
439 Q 0.296
440 L -0.534
441 D -0.406
442 K -0.606
443 L 0.452
444 D 0.152
445 L -0.729
446 E 0.171
447 N 0.626
448 Y -0.611
449 Q -0.486
450 L 3.624
451 K -0.957
452 N -0.190
453 Q 0.307
454 L 1.031
455 N -0.762
456 T -1.030
457 L 0.380
458 D 0.003
459 N -0.904
460 Q -1.324
461 K -0.880
462 L -1.241
463 I -1.445
464 L -0.180
465 S -1.009
466 Q -0.287
467 Y -0.999
468 E 0.325
469 S -0.344
470 N -0.373
471 F -0.311
472 I -1.231
473 K -0.796
474 F 0.135
475 N 0.099
476 Q -0.699
477 N -0.474
478 L 1.472
479 L 0.405
480 L 0.315
481 H 0.587
482 L 1.108
483 D -0.205
484 S 0.266
485 I -0.001
486 F 0.488
487 N -0.220
488 I 0.007
489 L 1.622
490 Q -0.782
491 K 0.712
492 I 1.493
493 L 1.527
494 Q 1.016
495 E -0.349
496 S -0.121
497 S 2.688
498 I 1.732
499 A 0.195
500 Q 1.637
501 F 0.505
502 D -0.843
503 R -0.155
504 K 1.974
505 M 0.800
506 K -0.060
507 S -0.421
508 I 1.344
509 K -0.885
510 S 0.083
511 V 0.424
512 P -1.319
513 N -0.052
514 A -0.283
515 L 0.083
516 K -0.129
517 N 0.225
518 L -1.177
519 N -0.105
520 L -1.415
521 I -0.748
522 Q 0.194
523 P -0.946
524 K 0.323
525 L 0.782
526 E 0.332
527 S 1.532
528 L 1.145
529 Y 0.870
530 T -0.426
531 F 1.627
532 I 0.774
533 E 1.799
534 T 0.157
535 A 2.517
536 L -0.090
537 E 0.584
538 S 0.960
539 I 1.489
540 I 1.246
541 N 0.825
542 S 0.326
543 Y 1.155
544 I -0.285
545 S -0.662
546 S 0.326
547 L 1.334
548 I 0.474
549 S -0.418
550 M 0.152
551 E -0.649
552 T -0.539
553 P -0.928
554 E -0.536
555 Q -0.045
556 P -0.642
557 H -1.120
558 Q -0.091
559 Q 0.742
560 G -1.145
561 N -0.682
562 E -0.748
563 L -0.318
564 T -0.928
565 A -1.202
566 T -0.612
567 P -1.071
568 N -1.028
569 K -0.479
570 E -0.018
571 L 0.146
572 T 0.431
573 L 1.003
574 R 0.266
575 I 1.310
576 E 0.672
577 E 0.961
578 L 3.532
579 Q 1.351
580 R 1.782
581 R 2.273
582 W 1.143
583 I -0.126
584 S 0.347
585 E 3.551
586 R 1.705
587 E 3.452
588 R 2.016
589 R 2.340
590 K 1.516
591 L 2.486
592 D 2.159
593 A -0.384
594 N 0.150
595 A 0.831
596 S 1.589
597 E -0.013
598 A -0.711
599 R 1.443
600 I 1.497
601 K -0.167
602 A -0.493
603 L 4.141
604 E 2.736
605 Q -1.097
606 E 4.883
607 N 1.163
608 E -0.086
609 S -0.574
610 L 4.112
611 R 2.129
612 S 1.093
613 K 1.387
614 L 2.984
615 F -1.000 *
616 N -1.000 *
617 L -1.000 *
618 S -1.000 *
619 I -1.000 *
620 N -1.000 *
621 N -1.000 *
622 P -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 72.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MVRRWIPSGR HLRNNDNTGD DDDSEFTNSM DSGMSIPSLR DSMTTRSSHN DPIKPALMND
70 80 90 100 110 120
SNKVKNLEKE LTNAKIKIQV LYEYIRRIPN KDGNAPSLGN DTDFRNSIIE GLNLEINKLK
130 140 150 160 170 180
QDLKAKEVEY QDTLQFVQEN LENSESIVNT INHLLSFILT HFNEQDENAH LLDKEERETL
190 200 210 220 230 240
EETLELSSDY VLEKMDTLSK FIIQFLQDFL HSKSRAESKQ DKEEFLSLAQ SSPAGSQLES
250 260 270 280 290 300
RDSPSSKEEN TDGGYQNDEI HDSNNHIDTE NVMANSTSLP ISAVESRFEK TLDTQLEIVI
310 320 330 340 350 360
ENLHKEYDQF INSIRLKFEK SQKLEKIIAS KLNEQSHLLD SLELEENSSS VIEKQDHLIS
370 380 390 400 410 420
QLKEKIESQS VLINNLEKLK EDIIKMKQNE KVLTKELETQ TKINKLKENN WDSYINDLEK
430 440 450 460 470 480
QINDLQIDKS EEFHVIQNQL DKLDLENYQL KNQLNTLDNQ KLILSQYESN FIKFNQNLLL
490 500 510 520 530 540
HLDSIFNILQ KILQESSIAQ FDRKMKSIKS VPNALKNLNL IQPKLESLYT FIETALESII
550 560 570 580 590 600
NSYISSLISM ETPEQPHQQG NELTATPNKE LTLRIEELQR RWISERERRK LDANASEARI
610 620
KALEQENESL RSKLFNLSIN NP
3D Structures in PDB
Not Available
Comments
CRM1 has been found to play a role in control of spindle assembly and cell cycle progression. Neuber et al. showed that in yeast, Xpo1 (CRM1 orthologue), binds to the protein Spc72, a component of the spindle pole body both in vivo and in vitro. They further demonstrated that the binding is mediated by a NES sequence (aa 418-429), which can autonomously direct the export of both GFP, and Spc72 in vivo. The export process was blocked in CRM1 temperature sensitive cells under non-permissive temperature. Mutations to critical hydrophobic residues (aa 425 and 427 to alanines) abolished both in vitro binding to CRM1, and in vivo export of GFP fusion protein.
References
[1]. "Nuclear export receptor Xpo1/Crm1 is physically and functionally linked to the spindle pole body in budding yeast"
Neuber, A., Franke, J., Wittstruck, A., Schlenstedt, G., Sommer, T., Stade, K. (2008)
Mol Cell Biol,
28:5348-5358
PubMed
User Input
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.