NESdb

Open reading frame 45 of Kaposi's sarcoma-associated herpesvirus 8 UniProt

None

Kaposi''s sarcoma-associated herpesvirus 8 (KSHV)

LMB Sensitive ^{Ref.1Identification of the nuclear export and adjacent nuclear localization signals for ORF45 of Kaposi's sarcoma-associated herpesvirus, Li et al., J. Virol., 2009}

*highlighted yellow in the full sequence

V284A/L285A, I289A/L291A ^{Ref.1Identification of the nuclear export and adjacent nuclear localization signals for ORF45 of Kaposi's sarcoma-associated herpesvirus, Li et al., J. Virol., 2009}

Unknown

*shown as underlined residues in the full sequence

²⁸⁴VLSQRIGLMDV²⁹⁴ ^{Ref.1Identification of the nuclear export and adjacent nuclear localization signals for ORF45 of Kaposi's sarcoma-associated herpesvirus, Li et al., J. Virol., 2009}

Unknown

Show FASTA Format

>gi|1718298|gb|AAC57127.1| ORF 45 [Human herpesvirus 8 type M]
MAMFVRTSSSTHDEERMLPIEGAPRRRPPVKFIFPPPPLSSLPGFGRPRGYAGPTVIDMSAPDDVFAEDT
PSPPATPLDLQISPDQSSGESEYDEDEEDEDEEENDDVQEEDEPEGYPADFFQPLSHLRPRPLARRAHTP
KPVAVVAGRVRSSTDTAESEASMGWVSQDDGFSPAGLSPSDDEGVAILEPMAAYTGTGAYGLSPASRNSV
PGTQSSPYSDPDEGPSWRPLRAAPTAIVDLTSDSDSDDSSNSPDVNNEAAFTDARHFSHQPPSSEEDGED
QGEVLSQRIGLMDVGQKRKRQSTASSGSEDVVRCQRQPNLSRKAVASVIIISSGSDTDEEPSSAVSVIVS
PSSTKGHLPTQSPSTSAHSISSGSTTTAGSRCSDPTRILASTPPLCGNGAYNWPWLD

Show Domain Info by CDD

Show Secondary Structure by PSIPRED

    	# PSIPRED HFORMAT (PSIPRED V3.2)

Conf: 942112699998435655588999989997545999999999999999999999421169
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
  AA: MAMFVRTSSSTHDEERMLPIEGAPRRRPPVKFIFPPPPLSSLPGFGRPRGYAGPTVIDMS
              10        20        30        40        50        60


Conf: 999888889999999998886799999999988856432001258666688899999888
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
  AA: APDDVFAEDTPSPPATPLDLQISPDQSSGESEYDEDEEDEDEEENDDVQEEDEPEGYPAD
              70        80        90       100       110       120


Conf: 889977789982333677865614530620136887422112598557999999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
  AA: FFQPLSHLRPRPLARRAHTPKPVAVVAGRVRSSTDTAESEASMGWVSQDDGFSPAGLSPS
             130       140       150       160       170       180


Conf: 732210236764346778654698788999999999999999999878787776235524
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
  AA: DDEGVAILEPMAAYTGTGAYGLSPASRNSVPGTQSSPYSDPDEGPSWRPLRAAPTAIVDL
             190       200       210       220       230       240


Conf: 789988899999887611210122223589999987556522001322011112211135
Pred: CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
  AA: TSDSDSDDSSNSPDVNNEAAFTDARHFSHQPPSSEEDGEDQGEVLSQRIGLMDVGQKRKR
             250       260       270       280       290       300


Conf: 776667884200013578643345026888416999998987752034458997688987
Pred: CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCC
  AA: QSTASSGSEDVVRCQRQPNLSRKAVASVIIISSGSDTDEEPSSAVSVIVSPSSTKGHLPT
             310       320       330       340       350       360


Conf: 58888654344698788898889844301259986679999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
  AA: QSPSTSAHSISSGSTTTAGSRCSDPTRILASTPPLCGNGAYNWPWLD
             370       380       390       400

Show Conservation Score by AL2CO

1     M       1.188
2     A       1.188
3     M       1.188
4     F       1.188
5     V      -0.839
6     R      -0.839
7     T      -0.839
8     S       1.188
9     S      -0.839
10    S      -0.839
11    T      -0.839
12    H      -0.839
13    D       1.188
14    E      -0.839
15    E      -0.839
16    R       1.188
17    M      -0.839
18    L      -0.839
19    P       1.188
20    I      -0.839
21    E       1.188
22    G       1.188
23    A       1.188
24    P       1.188
25    R       1.188
26    R       1.188
27    R      -1.000    *
28    P      -1.000    *
29    P      -1.000    *
30    V      -1.000    *
31    K      -1.000    *
32    F      -1.000    *
33    I      -0.839
34    F      -0.839
35    P       1.188
36    P      -0.839
37    P      -0.839
38    P      -0.839
39    L      -0.839
40    S      -0.839
41    S      -0.839
42    L      -0.839
43    P       1.188
44    G      -0.839
45    F      -0.839
46    G      -0.839
47    R      -0.839
48    P       1.188
49    R      -1.000    *
50    G      -1.000    *
51    Y       1.188
52    A      -0.839
53    G       1.188
54    P       1.188
55    T      -0.839
56    V       1.188
57    I       1.188
58    D       1.188
59    M      -0.839
60    S       1.188
61    A       1.188
62    P       1.188
63    D       1.188
64    D       1.188
65    V       1.188
66    F       1.188
67    A       1.188
68    E       1.188
69    D       1.188
70    T      -0.839
71    P      -0.839
72    S       1.188
73    P       1.188
74    P       1.188
75    A       1.188
76    T       1.188
77    P       1.188
78    L       1.188
79    D       1.188
80    L       1.188
81    Q      -0.839
82    I      -0.839
83    S       1.188
84    P       1.188
85    D      -0.839
86    Q      -0.839
87    S      -0.839
88    S      -1.000    *
89    G      -1.000    *
90    E      -1.000    *
91    S      -1.000    *
92    E      -1.000    *
93    Y      -1.000    *
94    D      -1.000    *
95    E      -1.000    *
96    D      -1.000    *
97    E      -1.000    *
98    E      -1.000    *
99    D      -1.000    *
100   E      -0.839
101   D       1.188
102   E      -0.839
103   E      -0.839
104   E      -0.839
105   N      -0.839
106   D      -0.839
107   D      -0.839
108   V      -0.839
109   Q      -0.839
110   E      -0.839
111   E      -0.839
112   D      -0.839
113   E      -0.839
114   P      -0.839
115   E      -0.839
116   G      -0.839
117   Y      -0.839
118   P       1.188
119   A       1.188
120   D      -0.839
121   F      -0.839
122   F      -0.839
123   Q      -0.839
124   P       1.188
125   L       1.188
126   S      -0.839
127   H      -0.839
128   L      -0.839
129   R       1.188
130   P      -0.839
131   R       1.188
132   P       1.188
133   L       1.188
134   A       1.188
135   R      -0.839
136   R      -0.839
137   A      -0.839
138   H      -0.839
139   T      -0.839
140   P      -0.839
141   K      -0.839
142   P       1.188
143   V       1.188
144   A       1.188
145   V       1.188
146   V       1.188
147   A      -0.839
148   G       1.188
149   R      -0.839
150   V       1.188
151   R       1.188
152   S       1.188
153   S      -0.839
154   T      -0.839
155   D      -0.839
156   T       1.188
157   A      -0.839
158   E      -0.839
159   S       1.188
160   E      -0.839
161   A      -0.839
162   S      -0.839
163   M      -0.839
164   G      -0.839
165   W       1.188
166   V      -0.839
167   S       1.188
168   Q      -0.839
169   D      -0.839
170   D      -0.839
171   G       1.188
172   F       1.188
173   S       1.188
174   P       1.188
175   A      -1.000    *
176   G       1.188
177   L      -0.839
178   S       1.188
179   P      -0.839
180   S       1.188
181   D       1.188
182   D      -0.839
183   E       1.188
184   G      -0.839
185   V      -0.839
186   A      -0.839
187   I      -0.839
188   L      -0.839
189   E      -0.839
190   P      -0.839
191   M      -0.839
192   A      -0.839
193   A      -0.839
194   Y      -0.839
195   T       1.188
196   G      -1.000    *
197   T      -1.000    *
198   G      -1.000    *
199   A      -1.000    *
200   Y      -1.000    *
201   G      -1.000    *
202   L      -1.000    *
203   S      -1.000    *
204   P      -1.000    *
205   A      -1.000    *
206   S      -1.000    *
207   R       1.188
208   N      -0.839
209   S       1.188
210   V      -0.839
211   P      -1.000    *
212   G      -0.839
213   T      -0.839
214   Q      -0.839
215   S      -0.839
216   S      -0.839
217   P      -0.839
218   Y      -0.839
219   S      -0.839
220   D       1.188
221   P       1.188
222   D       1.188
223   E       1.188
224   G       1.188
225   P       1.188
226   S       1.188
227   W       1.188
228   R       1.188
229   P       1.188
230   L       1.188
231   R       1.188
232   A       1.188
233   A      -0.839
234   P      -0.839
235   T      -0.839
236   A       1.188
237   I      -0.839
238   V      -0.839
239   D       1.188
240   L       1.188
241   T      -0.839
242   S       1.188
243   D       1.188
244   S       1.188
245   D       1.188
246   S       1.188
247   D      -0.839
248   D      -0.839
249   S      -0.839
250   S      -0.839
251   N      -0.839
252   S      -0.839
253   P      -1.000    *
254   D      -1.000    *
255   V      -1.000    *
256   N      -1.000    *
257   N      -1.000    *
258   E      -1.000    *
259   A      -1.000    *
260   A      -1.000    *
261   F      -1.000    *
262   T      -1.000    *
263   D      -1.000    *
264   A      -1.000    *
265   R      -1.000    *
266   H      -1.000    *
267   F      -1.000    *
268   S      -0.839
269   H       1.188
270   Q      -0.839
271   P      -0.839
272   P      -0.839
273   S       1.188
274   S      -0.839
275   E       1.188
276   E      -0.839
277   D      -0.839
278   G      -0.839
279   E      -0.839
280   D       1.188
281   Q      -0.839
282   G       1.188
283   E      -0.839
284   V      -0.839
285   L      -1.000    *
286   S      -0.839
287   Q      -0.839
288   R      -0.839
289   I      -0.839
290   G      -0.839
291   L      -0.839
292   M      -0.839
293   D      -0.839
294   V      -0.839
295   G      -0.839
296   Q      -0.839
297   K       1.188
298   R       1.188
299   K       1.188
300   R       1.188
301   Q       1.188
302   S       1.188
303   T       1.188
304   A       1.188
305   S       1.188
306   S       1.188
307   G      -0.839
308   S       1.188
309   E       1.188
310   D      -0.839
311   V      -0.839
312   V      -0.839
313   R       1.188
314   C      -0.839
315   Q      -0.839
316   R       1.188
317   Q      -0.839
318   P      -0.839
319   N      -0.839
320   L      -0.839
321   S       1.188
322   R      -0.839
323   K      -0.839
324   A      -0.839
325   V      -0.839
326   A      -0.839
327   S      -0.839
328   V      -0.839
329   I      -1.000    *
330   I      -1.000    *
331   I      -1.000    *
332   S      -0.839
333   S      -0.839
334   G      -0.839
335   S       1.188
336   D       1.188
337   T      -0.839
338   D       1.188
339   E      -0.839
340   E       1.188
341   P       1.188
342   S      -0.839
343   S      -0.839
344   A      -0.839
345   V      -0.839
346   S      -0.839
347   V      -0.839
348   I      -0.839
349   V      -0.839
350   S      -0.839
351   P       1.188
352   S      -0.839
353   S      -0.839
354   T      -0.839
355   K      -0.839
356   G      -0.839
357   H      -0.839
358   L      -0.839
359   P      -0.839
360   T      -0.839
361   Q      -0.839
362   S      -0.839
363   P       1.188
364   S      -0.839
365   T      -0.839
366   S      -0.839
367   A      -0.839
368   H      -0.839
369   S      -0.839
370   I      -0.839
371   S      -0.839
372   S       1.188
373   G      -0.839
374   S      -0.839
375   T      -0.839
376   T      -0.839
377   T      -0.839
378   A      -0.839
379   G      -0.839
380   S       1.188
381   R      -0.839
382   C      -0.839
383   S      -0.839
384   D       1.188
385   P      -0.839
386   T      -0.839
387   R       1.188
388   I      -0.839
389   L       1.188
390   A      -0.839
391   S       1.188
392   T       1.188
393   P       1.188
394   P       1.188
395   L       1.188
396   C      -0.839
397   G       1.188
398   N       1.188
399   G       1.188
400   A      -0.839
401   Y       1.188
402   N       1.188
403   W       1.188
404   P       1.188
405   W       1.188
406   L       1.188
407   D       1.188
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - 80.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50

        10         20         30         40         50         60 MAMFVRTSSS THDEERMLPI EGAPRRRPPV KFIFPPPPLS SLPGFGRPRG YAGPTVIDMS 
        70         80         90        100        110        120 APDDVFAEDT PSPPATPLDL QISPDQSSGE SEYDEDEEDE DEEENDDVQE EDEPEGYPAD 
       130        140        150        160        170        180 FFQPLSHLRP RPLARRAHTP KPVAVVAGRV RSSTDTAESE ASMGWVSQDD GFSPAGLSPS 
       190        200        210        220        230        240 DDEGVAILEP MAAYTGTGAY GLSPASRNSV PGTQSSPYSD PDEGPSWRPL RAAPTAIVDL 
       250        260        270        280        290        300 
TSDSDSDDSS NSPDVNNEAA FTDARHFSHQ PPSSEEDGED QGEVLSQRIG LMDVGQKRKR 
       310        320        330        340        350        360 QSTASSGSED VVRCQRQPNL SRKAVASVII ISSGSDTDEE PSSAVSVIVS PSSTKGHLPT 
       370        380        390        400                       QSPSTSAHSI SSGSTTTAGS RCSDPTRILA STPPLCGNGA YNWPWLD

Not Available

The KSHV ORF45 is an immediate-early protein and is also a tegument component of viral particles. It inhibits activation of interferon regulatory factor 7 (IRF-7) to inhibit host innate antiviral response. ORF45 also interacts with p90 RSK1/RSK2, affecting essential in KSHV reactivation and lytic replication. KSHV ORF45 is mostly cytoplasmic but it shuttles as localization is LMB-sensitive. Its NES (residues 284-294) is adjacent to a monopartite classical-NLS 297-KRKR-300. NES mutation in full length protein mislocalized it and the isolated NES targets reporter to the cytoplasm.

[1]. "Identification of the nuclear export and adjacent nuclear localization signals for ORF45 of Kaposi's sarcoma-associated herpesvirus"
Li, X., Zhu, F. (2009) J. Virol., 83:2531-2539 PubMed

Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus. Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.

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