E3 ubiquitin-protein ligase RFWD2
UniProt
Show FASTA Format
>gi|55976616|sp|Q9R1A8.2|RFWD2_MOUSE RecName: Full=E3 ubiquitin-protein ligase RFWD2; AltName: Full=Constitutive photomorphogenesis protein 1 homolog; Short=mCOP1; AltName: Full=RING finger and WD repeat domain protein 2
MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAASAATLVSGGVAPAAGSGGLGGPGRPVLV
AAAVSGSASAGGAVSAGQSRLSCAARPSAGVGGSSSSLGSSSRKRPLLVPLCNGLLNSYEDKSNDFVCPI
CFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRFEEKRFKLD
HSVSSTNGHRWQIFQDLLGTDQDNLDLANVNLMLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQ
LEQIQKELSVLEEDIKRVEEMSGLYSPVSEDSTVPQFEAPSPSHSSIIDSTEYSQPPGFSGTSQTKKQPW
YNSTLASRRKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLY
NGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLAS
SDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANV
CCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVG
KPYCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNE
FVSAVCWRALSDGESNVLIAANSQGTIKVLELV
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 998765888898899998766655556767889999984211112123699888889999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSVAASAATLVSGGVAPAAGSGG
10 20 30 40 50 60
Conf: 999887532343323778899854347888877789999878987778988888998786
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: LGGPGRPVLVAAAVSGSASAGGAVSAGQSRLSCAARPSAGVGGSSSSLGSSSRKRPLLVP
70 80 90 100 110 120
Conf: 544656654478998338510211322220578954340257886403999999897667
Pred: CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
AA: LCNGLLNSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVD
130 140 150 160 170 180
Conf: 887768525699999999887598640136677778764046778420388888633445
Pred: CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHH
AA: NIDHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDLLGTDQDNLDLANV
190 200 210 220 230 240
Conf: 589999999877677988999999999999999984599999788878778766898986
Pred: HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: NLMLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEE
250 260 270 280 290 300
Conf: 310346888999844544899998763126644699989778889765544311466301
Pred: HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
AA: MSGLYSPVSEDSTVPQFEAPSPSHSSIIDSTEYSQPPGFSGTSQTKKQPWYNSTLASRRK
310 320 330 340 350 360
Conf: 000024871288860487633588766542012200321011111013400014544467
Pred: CCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEEEEECCCCCCCCCC
AA: RLTAHFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLY
370 380 390 400 410 420
Conf: 877857999997999959995089929999587543137541245242115996899998
Pred: CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEE
AA: NGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISW
430 440 450 460 470 480
Conf: 079995899634999489986788916655234589489998149999848960199929
Pred: CCCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCE
AA: SSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKV
490 500 510 520 530 540
Conf: 965469865134340676677999889997189994379919997678998502761479
Pred: EEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCEEEECCCC
AA: KLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGH
550 560 570 580 590 600
Conf: 897899995199959994489939976589993456640124853899982199979960
Pred: CCCEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEC
AA: RKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACG
610 620 630 640 650 660
Conf: 499829999789992778954067666655677889999828999953237899999999
Pred: CCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEE
AA: SENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALSDGESNVLIA
670 680 690 700 710 720
Conf: 7399978999709
Pred: ECCCCCEEEEECC
AA: ANSQGTIKVLELV
730
Show Conservation Score by AL2CO
1 M -1.000 *
2 S -1.000 *
3 G -1.000 *
4 S -1.000 *
5 R -1.000 *
6 Q -1.000 *
7 A -1.000 *
8 G -1.000 *
9 S -1.000 *
10 G -1.000 *
11 S -1.000 *
12 A -1.000 *
13 G -1.000 *
14 T -1.000 *
15 S -1.000 *
16 P -1.000 *
17 G -1.000 *
18 S -1.000 *
19 S -1.000 *
20 A -1.000 *
21 A -1.000 *
22 S -1.000 *
23 S -1.000 *
24 V -1.000 *
25 T -1.000 *
26 S -1.000 *
27 A -1.000 *
28 S -1.000 *
29 S -1.000 *
30 S -1.000 *
31 L -1.000 *
32 S -1.000 *
33 S -1.000 *
34 S -1.000 *
35 P -1.000 *
36 S -1.000 *
37 P -1.000 *
38 P -1.000 *
39 S -1.000 *
40 V -1.000 *
41 A -1.000 *
42 A -1.000 *
43 S -1.000 *
44 A -1.000 *
45 A -1.000 *
46 T -1.000 *
47 L -1.000 *
48 V -1.000 *
49 S -1.000 *
50 G -1.000 *
51 G -1.000 *
52 V -1.000 *
53 A -1.000 *
54 P -1.000 *
55 A -1.000 *
56 A -1.000 *
57 G -1.000 *
58 S -1.000 *
59 G -1.000 *
60 G -1.000 *
61 L -1.000 *
62 G -1.000 *
63 G -1.000 *
64 P -1.000 *
65 G -1.000 *
66 R -1.000 *
67 P -1.000 *
68 V -1.000 *
69 L -1.000 *
70 V -1.000 *
71 A -1.000 *
72 A -1.000 *
73 A -1.000 *
74 V -1.000 *
75 S -1.000 *
76 G -1.000 *
77 S -1.000 *
78 A -1.000 *
79 S -1.000 *
80 A -1.000 *
81 G -1.000 *
82 G -1.000 *
83 A -1.000 *
84 V -1.000 *
85 S -1.000 *
86 A -1.000 *
87 G -1.000 *
88 Q -1.000 *
89 S -1.000 *
90 R -1.000 *
91 L -1.000 *
92 S -1.000 *
93 C -1.000 *
94 A -1.000 *
95 A -1.000 *
96 R -1.000 *
97 P -1.000 *
98 S -1.000 *
99 A -1.000 *
100 G -1.000 *
101 V -1.000 *
102 G -1.000 *
103 G -1.000 *
104 S -1.000 *
105 S -1.000 *
106 S -1.000 *
107 S -1.000 *
108 L -1.000 *
109 G -1.000 *
110 S -1.000 *
111 S -1.000 *
112 S -1.000 *
113 R -1.000 *
114 K -1.000 *
115 R -1.000 *
116 P -1.000 *
117 L -1.000 *
118 L -1.000 *
119 V -1.000 *
120 P -1.000 *
121 L -1.000 *
122 C -1.000 *
123 N -1.000 *
124 G -1.000 *
125 L -1.000 *
126 L -1.000 *
127 N -1.000 *
128 S -1.000 *
129 Y -1.000 *
130 E -1.000 *
131 D -1.000 *
132 K -1.000 *
133 S -1.000 *
134 N -1.000 *
135 D -1.000 *
136 F -1.000 *
137 V -1.000 *
138 C -1.000 *
139 P -1.000 *
140 I -1.000 *
141 C -1.000 *
142 F -1.000 *
143 D -1.000 *
144 M -1.000 *
145 I -1.000 *
146 E -1.000 *
147 E -1.000 *
148 A -1.000 *
149 Y -1.000 *
150 M -1.000 *
151 T -1.000 *
152 K -1.000 *
153 C -1.000 *
154 G -1.000 *
155 H -1.000 *
156 S -1.000 *
157 F -1.000 *
158 C -1.000 *
159 Y -1.000 *
160 K -1.000 *
161 C -1.000 *
162 I -1.000 *
163 H -1.000 *
164 Q -1.000 *
165 S -1.000 *
166 L -1.000 *
167 E -1.000 *
168 D -1.000 *
169 N -1.000 *
170 N -1.000 *
171 R -1.000 *
172 C -1.000 *
173 P -1.000 *
174 K -1.000 *
175 C -1.000 *
176 N -1.000 *
177 Y -1.000 *
178 V -1.000 *
179 V -1.000 *
180 D -1.000 *
181 N -1.000 *
182 I -1.000 *
183 D -1.000 *
184 H -1.000 *
185 L -1.000 *
186 Y -1.000 *
187 P -1.000 *
188 N -1.000 *
189 F -1.000 *
190 L -1.000 *
191 V -1.000 *
192 N -1.000 *
193 E -1.000 *
194 L -1.000 *
195 I -1.000 *
196 L -1.000 *
197 K -1.000 *
198 Q -1.000 *
199 K -1.000 *
200 Q -1.000 *
201 R -1.000 *
202 F -1.000 *
203 E -1.000 *
204 E -1.000 *
205 K -1.000 *
206 R -1.000 *
207 F -1.000 *
208 K -1.000 *
209 L -1.000 *
210 D -1.000 *
211 H -1.000 *
212 S -1.000 *
213 V -1.000 *
214 S -1.000 *
215 S -1.000 *
216 T -1.000 *
217 N -1.000 *
218 G -1.000 *
219 H -1.000 *
220 R -1.000 *
221 W -1.000 *
222 Q -1.000 *
223 I -1.000 *
224 F -1.000 *
225 Q -1.000 *
226 D -1.000 *
227 L -1.000 *
228 L -1.000 *
229 G -1.000 *
230 T -1.000 *
231 D -1.000 *
232 Q -1.000 *
233 D -1.000 *
234 N -1.000 *
235 L -1.000 *
236 D -1.000 *
237 L -1.000 *
238 A -1.000 *
239 N -1.000 *
240 V -1.000 *
241 N -1.000 *
242 L -1.000 *
243 M -1.000 *
244 L -1.000 *
245 E -1.000 *
246 L -1.000 *
247 L -1.000 *
248 V -1.000 *
249 Q -1.000 *
250 K -1.000 *
251 K -1.000 *
252 K -1.000 *
253 Q -1.000 *
254 L -1.000 *
255 E -1.000 *
256 A -1.000 *
257 E -1.000 *
258 S -1.000 *
259 H -1.000 *
260 A -1.000 *
261 A -1.000 *
262 Q -1.000 *
263 L -1.000 *
264 Q -1.000 *
265 I -1.000 *
266 L -1.000 *
267 M -1.000 *
268 E -1.000 *
269 F -1.000 *
270 L -1.000 *
271 K -1.000 *
272 V -1.000 *
273 A -1.000 *
274 R -1.000 *
275 R -1.000 *
276 N -1.000 *
277 K -1.000 *
278 R -1.000 *
279 E -1.000 *
280 Q -1.000 *
281 L -1.000 *
282 E -1.000 *
283 Q -1.000 *
284 I -1.000 *
285 Q -1.000 *
286 K -0.619
287 E -0.656
288 L -0.168
289 S -0.474
290 V -0.777
291 L 0.001
292 E -0.358
293 E -0.704
294 D -0.602
295 I -0.570
296 K -0.690
297 R -0.761
298 V -0.169
299 E -1.000
300 E -0.881
301 M -0.879
302 S -0.635
303 G -0.927
304 L -0.717
305 Y -0.888
306 S -0.832
307 P -0.982
308 V -1.028
309 S -1.061
310 E -0.898
311 D -0.740
312 S -1.063
313 T -0.988
314 V -0.761
315 P -0.896
316 Q -0.625
317 F -1.055
318 E -0.833
319 A -1.016
320 P -0.923
321 S -0.844
322 P -0.894
323 S -0.902
324 H -1.044
325 S -0.866
326 S -1.069
327 I -1.095
328 I -0.648
329 D -1.107
330 S -0.747
331 T -0.713
332 E -0.982
333 Y -0.946
334 S -0.768
335 Q -0.898
336 P -0.751
337 P -0.893
338 G -0.804
339 F -0.940
340 S -0.830
341 G -0.769
342 T -0.896
343 S -1.113
344 Q -0.719
345 T -0.969
346 K -0.837
347 K -0.740
348 Q -0.769
349 P -0.874
350 W -0.926
351 Y -0.945
352 N -0.894
353 S -0.945
354 T -0.784
355 L -0.840
356 A -0.740
357 S -0.816
358 R -0.996
359 R -0.697
360 K -0.838
361 R -0.805
362 L 0.030
363 T -0.966
364 A -0.443
365 H -0.284
366 F -0.992
367 E -0.631
368 D -1.082
369 L 0.394
370 E -1.052
371 Q -0.776
372 C -0.658
373 Y -0.993
374 F -0.759
375 S -0.557
376 T -0.925
377 R -0.908
378 M -0.899
379 S -0.799
380 R -1.054
381 I -1.025
382 S -0.664
383 D -0.416
384 D -0.534
385 S -0.792
386 R -0.852
387 T -0.680
388 A -0.798
389 S -0.488
390 Q -0.618
391 L -0.244
392 D -0.609
393 E -0.810
394 F -0.815
395 Q -0.762
396 E -0.607
397 C -0.928
398 L -0.379
399 S -1.066
400 K -0.460
401 F -0.684
402 T -0.616
403 R -0.734
404 Y -0.843
405 N -0.522
406 S -0.221
407 V -0.054
408 R 0.298
409 P -0.169
410 L -0.750
411 A -0.761
412 T -0.253
413 L -0.348
414 S -0.456
415 Y -0.751
416 A -0.815
417 S -0.786
418 D -0.758
419 L -0.005
420 Y -0.917
421 N 0.322
422 G -0.178
423 S -0.662
424 S -0.503
425 I -1.052
426 V 1.368
427 S -0.969
428 S 0.199
429 I 1.654
430 E -0.320
431 F 1.554
432 D 1.047
433 R -0.253
434 D 0.676
435 C -0.047
436 D -0.309
437 Y -0.456
438 F 1.353
439 A 1.147
440 I 1.171
441 A 1.388
442 G 0.962
443 V -0.998
444 T 0.500
445 K -0.203
446 K -0.019
447 I 1.818
448 K 0.837
449 V 1.413
450 Y 1.985
451 E 1.271
452 Y -0.048
453 G -0.632
454 T 0.034
455 V -0.577
456 I -0.571
457 Q -0.829
458 D -0.556
459 A -0.869
460 V -0.621
461 D -0.419
462 I -0.187
463 H -0.036
464 Y -0.588
465 P -0.605
466 E -0.680
467 N -0.641
468 E -0.036
469 M -0.704
470 T -0.381
471 C 0.224
472 N -0.695
473 S -0.226
474 K -0.984
475 I 1.567
476 S -0.735
477 C 0.099
478 I 1.401
479 S -0.071
480 W 1.485
481 S 1.331
482 S -0.013
483 Y 0.055
484 H -0.351
485 K -0.396
486 N -0.333
487 L -0.394
488 L 1.487
489 A 1.251
490 S 1.676
491 S 1.349
492 D 1.018
493 Y -0.879
494 E 1.562
495 G -0.385
496 T 0.143
497 V 2.196
498 I -0.008
499 L 1.468
500 W 4.160
501 D 1.228
502 G -0.137
503 F -0.844
504 T 0.033
505 G 0.097
506 Q -0.290
507 R -0.627
508 S -0.499
509 K -0.875
510 V -0.642
511 Y 0.784
512 Q -0.777
513 E 1.151
514 H 2.201
515 E -0.602
516 K -0.257
517 R -0.918
518 C 1.430
519 W -0.765
520 S 0.370
521 V 2.198
522 D -0.208
523 F 1.464
524 N 1.238
525 L -1.000 *
526 M -0.363
527 D 0.884
528 P 0.883
529 K -0.399
530 L -0.219
531 L 1.463
532 A 1.544
533 S 2.786
534 G 1.725
535 S 2.540
536 D -0.875
537 D 2.681
538 A -0.571
539 K 0.164
540 V 1.672
541 K 0.274
542 L 1.784
543 W 2.896
544 S 0.718
545 T -0.144
546 N -0.522
547 L -0.333
548 D -0.062
549 N -0.773
550 S -0.517
551 V -0.448
552 A -0.811
553 S -0.593
554 I -0.448
555 E -0.781
556 A -0.062
557 K -0.416
558 A -0.813
559 N -0.337
560 V 1.226
561 C -0.867
562 C 0.377
563 V 1.243
564 K -0.331
565 F 0.818
566 S 0.424
567 P -0.119
568 S -0.482
569 S 0.163
570 R -0.256
571 Y -0.710
572 H -0.754
573 L 2.023
574 A 1.202
575 F 0.326
576 G 1.670
577 C 1.145
578 A -0.955
579 D 2.142
580 H -0.557
581 C -0.206
582 V 1.653
583 H 0.501
584 Y 0.847
585 Y 2.079
586 D 1.484
587 L 0.435
588 R -0.379
589 N -0.213
590 T -0.289
591 K -0.149
592 Q -0.572
593 P -0.250
594 I -0.516
595 M -0.759
596 V -0.162
597 F 1.059
598 K -0.762
599 G 1.047
600 H 1.854
601 R -0.658
602 K -0.448
603 A -0.959
604 V 1.937
605 S -0.869
606 Y -0.349
607 A 1.261
608 K -0.781
609 F 1.405
610 V 0.494
611 S 1.222
612 G 0.216
613 E -0.687
614 E -0.819
615 I 1.548
616 V 1.581
617 S 2.916
618 A 1.596
619 S 1.384
620 T -0.970
621 D 2.555
622 S -0.406
623 Q 0.386
624 L 1.622
625 K 1.031
626 L 1.765
627 W 3.821
628 N 0.764
629 V 0.234
630 G -0.612
631 K -0.131
632 P -0.389
633 Y -0.804
634 C -0.334
635 L -0.861
636 R -0.729
637 S -0.093
638 F 1.225
639 K -0.654
640 G 1.575
641 H 2.377
642 I -0.874
643 N -0.199
644 E -0.870
645 K 1.073
646 N -0.667
647 F 0.350
648 V 1.886
649 G -0.035
650 L 1.423
651 A 1.347
652 S -0.210
653 N 0.021
654 G 0.983
655 D -0.467
656 Y -0.388
657 I 1.741
658 A 1.071
659 C 2.084
660 G 1.615
661 S 2.069
662 E -0.998
663 N 1.164
664 N -0.449
665 S 0.401
666 L 1.463
667 Y 0.613
668 L 0.868
669 Y 2.785
670 Y 0.688
671 K -0.132
672 G -0.583
673 L 0.104
674 S 0.032
675 K -0.409
676 T -0.445
677 L -0.400
678 L -0.728
679 T -0.532
680 F 0.393
681 K -0.527
682 F -0.068
683 D 0.213
684 T -0.669
685 V -0.417
686 K -1.019
687 S -0.219
688 V -0.070
689 L -1.000 *
690 D -0.353
691 K -0.842
692 D -0.596
693 R -0.853
694 K -0.766
695 E -0.917
696 D -0.872
697 D -0.105
698 T -0.436
699 N -0.508
700 E -0.463
701 F -0.750
702 V 1.200
703 S -0.879
704 A 0.241
705 V 0.404
706 C 0.047
707 W 1.079
708 R 0.512
709 A 0.084
710 L -1.000 *
711 S -1.000 *
712 D -1.000 *
713 G -1.000 *
714 E 0.404
715 S 0.470
716 N -0.319
717 V -0.345
718 L 1.492
719 I 1.167
720 A 1.744
721 A 1.735
722 N 1.150
723 S -1.033
724 Q 0.069
725 G -0.448
726 T 0.130
727 I 1.613
728 K 1.201
729 V 1.894
730 L 1.908
731 E 0.264
732 L 1.722
733 V -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 82.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MSGSRQAGSG SAGTSPGSSA ASSVTSASSS LSSSPSPPSV AASAATLVSG GVAPAAGSGG
70 80 90 100 110 120
LGGPGRPVLV AAAVSGSASA GGAVSAGQSR LSCAARPSAG VGGSSSSLGS SSRKRPLLVP
130 140 150 160 170 180
LCNGLLNSYE DKSNDFVCPI CFDMIEEAYM TKCGHSFCYK CIHQSLEDNN RCPKCNYVVD
190 200 210 220 230 240
NIDHLYPNFL VNELILKQKQ RFEEKRFKLD HSVSSTNGHR WQIFQDLLGT DQDNLDLANV
250 260 270 280 290 300
NLMLELLVQK KKQLEAESHA AQLQILMEFL KVARRNKREQ LEQIQKELSV LEEDIKRVEE
310 320 330 340 350 360
MSGLYSPVSE DSTVPQFEAP SPSHSSIIDS TEYSQPPGFS GTSQTKKQPW YNSTLASRRK
370 380 390 400 410 420
RLTAHFEDLE QCYFSTRMSR ISDDSRTASQ LDEFQECLSK FTRYNSVRPL ATLSYASDLY
430 440 450 460 470 480
NGSSIVSSIE FDRDCDYFAI AGVTKKIKVY EYGTVIQDAV DIHYPENEMT CNSKISCISW
490 500 510 520 530 540
SSYHKNLLAS SDYEGTVILW DGFTGQRSKV YQEHEKRCWS VDFNLMDPKL LASGSDDAKV
550 560 570 580 590 600
KLWSTNLDNS VASIEAKANV CCVKFSPSSR YHLAFGCADH CVHYYDLRNT KQPIMVFKGH
610 620 630 640 650 660
RKAVSYAKFV SGEEIVSAST DSQLKLWNVG KPYCLRSFKG HINEKNFVGL ASNGDYIACG
670 680 690 700 710 720
SENNSLYLYY KGLSKTLLTF KFDTVKSVLD KDRKEDDTNE FVSAVCWRAL SDGESNVLIA
730
ANSQGTIKVL ELV
COP1 controls the light-responsive gene expression and photomorphogenic development. Yi et al. characterized COP1 genes in mammalian cells and found that they are associated with ubiquitinated proteins. Mammalian COP1 is localized predominantly in the nucleus, present in both the nucleoplasm and the nuclear envelop. AA 226-270, located in the N-terminal coiled-coil region, are sufficient to localize the protein to the cytoplasm. In addition, mammalian COP1 contains a novel NLS, composed of two clusters of positively charged aa bridged by a RING finger. Note that residues 237-247 is the putative NES by homology. But its sufficiency is not tested.
[1]. "An initial biochemical and cell biological characterization of the mammalian homologue of a central plant developmental switch, COP1"
Yi C, Wang H, Wei N, Deng XW (2002)
BMC Cell Biol.,
3:
PubMed
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