Summary for Topoisomerase II-beta (NES ID: 95)
Full Name
DNA topoisomerase II, beta isozyme UniProt
Alternative Names
Topoisomerase II-beta, isoform beta-1
Organism
Homo sapiens (Human)
Experimental Evidence for CRM1-mediated Export
Mutations That Affect Nuclear Export
*highlighted yellow in the full sequence
T1035 by Deletion/V1036 by Deletion Ref.1Identification of functional nuclear export sequences in human topoisomerase IIalpha and beta., Mirski et al., Biochem Biophys Res Commun, 2003 Mutations That Affect CRM1 Binding
Unknown
Functional Export Signals
*shown as underlined residues in the full sequence
1034ETVQDILKEFF1044 Ref.1Identification of functional nuclear export sequences in human topoisomerase IIalpha and beta., Mirski et al., Biochem Biophys Res Commun, 2003 Secondary Structure of Export Signal
Unknown
Other Residues Important for Export
Unknown
Sequence
Show FASTA Format
>gi|20141946|sp|Q02880.3|TOP2B_HUMAN RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA topoisomerase II, beta isozyme MAKSGGCGAGAGVGGGNGALTWVTLFDQNNAAKKEESETANKNDSSKKLSVERVYQKKTQLEHILLRPDT YIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIW NNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHS FKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNG KKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYV VDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFF KAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLA VSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIM TDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWK IKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQRRLHG LPEQFLYGTATKHLTYNDFINKELILFSNSDNERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAG SVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFP AVDDNLLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPML PNYKNFKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKE YHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSY YGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAE EDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLA AFVEELDKVESQEREDVLAGMSGKAIKGKVGKPKVKKLQLEETMPSPYGRRIIPEITAMKADASKKLLKK KKGDLDTAAVKVEFDEEFSGAPVEGAGEEALTPSVPINKGPKPKREKKEPGTRVRKTPTSSGKPSAKKVK KRNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAERPKYTFDFSEEEDDDADDDDDDNNDLEELKVKAS PITNDGEDEFVPSDGLDKDEYTFSPGKSKATPEKSLHDKKSQDFGNLFSFPSYSQKSEDDSAKFDSNEED SASVFSPSFGLKQTDKVPSKTVAAKKGKPSSDTVPKPKRAPKQKKVVEAVNSDSDSEFGIPKKTTTPKGK GRGAKKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVDIFPSDFPTEPPSLPRTGRARKEVKYF AESDEEEDDVDFAMFNShow Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 977799999999888998885431012243000133333578998777634265430472
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
AA: MAKSGGCGAGAGVGGGNGALTWVTLFDQNNAAKKEESETANKNDSSKKLSVERVYQKKTQ
10 20 30 40 50 60
Conf: 102014899752245542022126408975148996304863121001200265345779
Pred: CHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCC
AA: LEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRD
70 80 90 100 110 120
Conf: 999789999948999699996999861255033462221442112567899878876334
Pred: CCCCEEEEEEECCCCEEEEEECCCCCCEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCC
AA: KNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDDDEKKVT
130 140 150 160 170 180
Conf: 788873421001234509999302877734877623377767886382157998069997
Pred: CCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCEEEEE
AA: GGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITF
190 200 210 220 230 240
Conf: 026236588876888999976214641588886099988953388997778862013543
Pred: ECCCCCCCCCCCCHHHHHHHHHCEEECCCCCCCEEEEECCEECCCCCHHHHHHHHCCCCC
AA: QPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKL
250 260 270 280 290 300
Conf: 114896409972369982799993189860565540001377864211668999999999
Pred: CCCCCCCEEEECCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
AA: DETGVALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE
310 320 330 340 350 360
Conf: 999505999986810103524799970112899987543321358888887544698999
Pred: HHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
AA: VVKKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFF
370 380 390 400 410 420
Conf: 999722269999999998987874210498642123599982122113698999615997
Pred: HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
AA: KAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLIL
430 440 450 460 470 480
Conf: 146204476641752224763100346873332130118878653999999998537776
Pred: CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
AA: TEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYK
490 500 510 520 530 540
Conf: 433791233656665437301688999714589886431017457577953212343299
Pred: CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE
AA: KSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVK
550 560 570 580 590 600
Conf: 750991330248256899984369998822784046887976999999985320536216
Pred: EECCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEEEE
AA: ASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFR
610 620 630 640 650 660
Conf: 769786221101127868466899999889766753206998401037753421034210
Pred: ECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCH
AA: YAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFI
670 680 690 700 710 720
Conf: 478851124454678642223998888400000113478583101102334431014430
Pred: HHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEHHHHHHHHCCCCC
AA: NKELILFSNSDNERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAYHH
730 740 750 760 770 780
Conf: 024578799984200225576345455886533347998888965000035045750599
Pred: CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHCCC
AA: GEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFP
790 800 810 820 830 840
Conf: 888433322223892413301001220565228886356435899999989999999985
Pred: CCCCCCCCCCCCCCCEECCEEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
AA: AVDDNLLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM
850 860 870 880 890 900
Conf: 389999999886458820499816971699999999719789997168864238688875
Pred: HCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCHHHHHHHH
AA: LDGLDPHPMLPNYKNFKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQV
910 920 930 940 950 960
Conf: 700247997776432112223478509999993998999999807330111122111266
Pred: HHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCC
AA: LEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNS
970 980 990 1000 1010 1020
Conf: 053479999044599999999999999998999999999998999998313467889755
Pred: EEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: MVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKI
1030 1040 1050 1060 1070 1080
Conf: 391723047878999999988998895245788877643221001467999999999988
Pred: CCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
AA: QGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSG
1090 1100 1110 1120 1130 1140
Conf: 986302376210023999999999898998999998449905679999999999999998
Pred: CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AA: PDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVE
1150 1160 1170 1180 1190 1200
Conf: 999999971136875456679965321123348999988777874220012122454311
Pred: HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
AA: SQEREDVLAGMSGKAIKGKVGKPKVKKLQLEETMPSPYGRRIIPEITAMKADASKKLLKK
1210 1220 1230 1240 1250 1260
Conf: 379986101123434335799988888677899999999999976668999767778899
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: KKGDLDTAAVKVEFDEEFSGAPVEGAGEEALTPSVPINKGPKPKREKKEPGTRVRKTPTS
1270 1280 1290 1300 1310 1320
Conf: 999984443347999988777667646789888998750000112499611137887788
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: SGKPSAKKVKKRNPWSDDESKSESDLEETEPVVIPRDSLLRRAAAERPKYTFDFSEEEDD
1330 1340 1350 1360 1370 1380
Conf: 999988996224432015899989998888999999988677899998899987556778
Pred: CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: DADDDDDDNNDLEELKVKASPITNDGEDEFVPSDGLDKDEYTFSPGKSKATPEKSLHDKK
1390 1400 1410 1420 1430 1440
Conf: 655588889999788887877767999456668999998988788999841011379999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: SQDFGNLFSFPSYSQKSEDDSAKFDSNEEDSASVFSPSFGLKQTDKVPSKTVAAKKGKPS
1450 1460 1470 1480 1490 1500
Conf: 998999988998532212369999777899999899897877776657889888899999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: SDTVPKPKRAPKQKKVVEAVNSDSDSEFGIPKKTTTPKGKGRGAKKRKASGSENEGDYNP
1510 1520 1530 1540 1550 1560
Conf: 888888777888888889788678999999999999999878667701023588767975
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC
AA: GRKTSKTTSKKPKKTSFDQDSDVDIFPSDFPTEPPSLPRTGRARKEVKYFAESDEEEDDV
1570 1580 1590 1600 1610 1620
Conf: 435679
Pred: CCCCCC
AA: DFAMFN
Show Conservation Score by AL2CO
1 M -1.000 *
2 A -1.000 *
3 K -1.000 *
4 S -1.000 *
5 G -1.000 *
6 G -1.000 *
7 C -1.000 *
8 G -1.000 *
9 A -1.000 *
10 G -1.000 *
11 A -1.000 *
12 G -1.000 *
13 V -1.000 *
14 G -1.000 *
15 G -1.000 *
16 G -1.000 *
17 N -1.000 *
18 G -1.000 *
19 A -1.000 *
20 L -1.000 *
21 T -1.000 *
22 W -1.000 *
23 V -1.000 *
24 T -1.000 *
25 L -1.000 *
26 F -1.000 *
27 D -1.000 *
28 Q -1.000 *
29 N -1.000 *
30 N -1.000 *
31 A -1.000 *
32 A -1.000 *
33 K -1.000 *
34 K -1.000 *
35 E -1.000 *
36 E -1.000 *
37 S -1.000 *
38 E -1.000 *
39 T -0.872
40 A -0.940
41 N -0.814
42 K -0.802
43 N -0.720
44 D -0.725
45 S -0.664
46 S -0.804
47 K -0.636
48 K -0.662
49 L -0.700
50 S -0.339
51 V -0.393
52 E 0.157
53 R -0.391
54 V -0.390
55 Y 1.194
56 Q 0.042
57 K 0.803
58 K 0.582
59 T 0.822
60 Q 0.345
61 L -0.099
62 E 1.197
63 H 1.992
64 I 1.789
65 L 1.005
66 L -0.436
67 R 1.446
68 P 2.289
69 D 1.230
70 T 0.737
71 Y 2.677
72 I 1.421
73 G 2.677
74 S 0.946
75 V 0.311
76 E 0.016
77 P -0.987
78 L -0.960
79 T -0.730
80 Q -0.696
81 F -0.975
82 M -0.560
83 W 0.654
84 V 0.035
85 Y -0.568
86 D -0.278
87 E -0.558
88 D -0.742
89 V -0.936
90 G -0.892
91 M -0.426
92 N -0.829
93 C -1.005
94 R -0.144
95 E -0.627
96 V 0.080
97 T -0.535
98 F 0.117
99 V 0.024
100 P 1.244
101 G 1.342
102 L 1.167
103 Y 0.936
104 K 1.778
105 I 1.431
106 F 0.865
107 D 2.291
108 E 2.293
109 I 1.327
110 L 1.023
111 V 1.111
112 N 2.677
113 A 1.650
114 A 0.167
115 D 2.677
116 N 0.675
117 K -0.403
118 Q -0.456
119 R 0.152
120 D -0.224
121 K -0.752
122 N -0.639
123 M 0.453
124 T 0.109
125 C -0.892
126 I 0.706
127 K -0.208
128 V 1.082
129 S -0.800
130 I 0.509
131 D -0.399
132 P -0.730
133 E -0.527
134 S -0.744
135 N -0.314
136 I -0.812
137 I 1.243
138 S -0.472
139 I 1.059
140 W -0.734
141 N 2.257
142 N 0.905
143 G 2.677
144 K -0.672
145 G 0.670
146 I 0.946
147 P 0.535
148 V 1.199
149 V -0.441
150 E -0.367
151 H 0.980
152 K -0.444
153 V -0.466
154 E 0.178
155 K 0.160
156 V 0.338
157 Y 0.460
158 V 1.199
159 P 1.261
160 A 0.182
161 L 1.330
162 I 0.787
163 F 1.615
164 G 2.173
165 Q -0.124
166 L 1.397
167 L 1.212
168 T 1.425
169 S 1.547
170 S 0.900
171 N 1.825
172 Y 1.553
173 D 1.153
174 D 0.987
175 D -0.426
176 E -0.185
177 K -0.595
178 K 1.202
179 V 0.265
180 T 0.971
181 G 1.962
182 G 2.677
183 R 1.773
184 N 1.616
185 G 2.677
186 Y 1.208
187 G 2.677
188 A 1.661
189 K 2.677
190 L 1.384
191 C 0.827
192 N 2.195
193 I 1.297
194 F 0.989
195 S 2.290
196 T -0.367
197 K -0.552
198 F 1.874
199 T -0.645
200 V 1.258
201 E -0.145
202 T 0.308
203 A -0.627
204 C 0.035
205 K -0.744
206 E -0.851
207 Y -0.920
208 K -0.626
209 H -0.485
210 S -0.824
211 F 0.301
212 K -0.606
213 Q 0.155
214 T -0.601
215 W 0.295
216 M -0.880
217 N -0.467
218 N 0.706
219 M 0.466
220 M -0.868
221 K -0.799
222 T -0.888
223 S -0.765
224 E -0.432
225 A -0.230
226 K -0.719
227 I -0.311
228 K -0.582
229 H -0.814
230 F -1.138
231 D -0.868
232 G -0.627
233 E -0.561
234 D -0.092
235 Y -0.126
236 T 0.988
237 C -0.550
238 I 1.408
239 T 0.065
240 F 0.920
241 Q -0.820
242 P 1.737
243 D 1.773
244 L 0.808
245 S -0.552
246 K 0.911
247 F 1.659
248 K -0.117
249 M -0.187
250 E -0.634
251 K -0.956
252 L -0.133
253 D 0.006
254 K -0.714
255 D 0.139
256 I -0.408
257 V -0.562
258 A -0.686
259 L 0.810
260 M 0.333
261 T -0.915
262 R 1.137
263 R 2.284
264 A 0.597
265 Y 0.142
266 D 1.717
267 L 0.407
268 A 0.389
269 G 0.559
270 S -0.186
271 C -0.561
272 R -0.575
273 G -0.183
274 V 0.242
275 K -0.673
276 V 0.889
277 M -0.676
278 F 0.477
279 N 0.956
280 G 0.266
281 K -0.591
282 K -0.727
283 L 0.369
284 P -0.699
285 V -0.334
286 N -0.723
287 G -0.018
288 F 0.681
289 R -0.667
290 S -0.361
291 Y 2.083
292 V 0.049
293 D -0.469
294 L -0.253
295 Y 0.653
296 V -0.897
297 K -0.802
298 D -0.762
299 K -0.929
300 L -1.073
301 D -0.849
302 E -0.860
303 T -0.978
304 G -0.875
305 V -1.013
306 A -0.981
307 L -1.041
308 K -0.889
309 V -0.859
310 I -0.858
311 H -1.037
312 E -0.918
313 L -1.013
314 A -0.898
315 N -0.730
316 E -0.727
317 R -0.573
318 W 0.731
319 D -0.203
320 V 0.307
321 C -0.127
322 L -0.171
323 T -0.569
324 L -0.856
325 S -0.098
326 E -0.390
327 K -0.661
328 G -0.559
329 F -0.485
330 Q -0.421
331 Q -0.227
332 I 0.169
333 S 1.389
334 F 1.281
335 V 1.138
336 N 2.677
337 S 0.551
338 I 1.109
339 A -0.096
340 T 1.883
341 T -0.736
342 K -0.348
343 G 2.677
344 G 2.677
345 R -0.024
346 H 2.677
347 V 0.886
348 D -0.247
349 Y -0.438
350 V 0.670
351 V -0.248
352 D -0.034
353 Q -0.860
354 V 0.820
355 V -0.336
356 G -0.496
357 K -0.876
358 L 0.177
359 I -0.864
360 E -0.662
361 V -0.936
362 V -0.438
363 K -0.650
364 K -0.298
365 K -0.617
366 N -0.832
367 K -0.300
368 A -0.832
369 G -0.507
370 V -0.838
371 S -0.830
372 V 0.463
373 K -0.136
374 P -0.333
375 F -0.829
376 Q -0.733
377 V 0.640
378 K 0.557
379 N -0.365
380 H -0.393
381 I 0.463
382 W -0.605
383 V 0.698
384 F 0.805
385 I 0.794
386 N 0.255
387 C 0.519
388 L -0.392
389 I 1.130
390 E 0.023
391 N 0.939
392 P 2.088
393 T -0.121
394 F 2.677
395 D 0.589
396 S 1.311
397 Q 1.886
398 T 0.367
399 K 2.251
400 E 0.768
401 N -0.771
402 M 1.120
403 T 0.287
404 L 0.490
405 Q -0.459
406 P -0.599
407 K -0.581
408 S -0.731
409 F 0.460
410 G 0.164
411 S -0.113
412 K -0.708
413 C -0.900
414 Q -0.748
415 L -0.210
416 S -0.441
417 E -0.537
418 K -0.758
419 F -0.181
420 F -0.494
421 K -0.505
422 A -1.009
423 A -0.297
424 S -0.831
425 N -0.618
426 C -0.246
427 G -0.478
428 I 0.058
429 V -0.413
430 E -0.385
431 S -0.716
432 I 0.021
433 L -0.697
434 N -0.731
435 W -0.865
436 V -0.265
437 K -0.740
438 F -0.915
439 K -0.304
440 A -0.609
441 Q -0.546
442 T -0.609
443 Q -0.562
444 L -0.546
445 N -0.820
446 K -0.440
447 K -0.617
448 C -0.807
449 S -0.481
450 S -0.523
451 V -0.408
452 K -0.346
453 Y -0.684
454 S -0.867
455 K -0.744
456 I -0.133
457 K -0.768
458 G -0.332
459 I -0.066
460 P -0.384
461 K 0.869
462 L 1.282
463 D -0.169
464 D 1.547
465 A 2.677
466 N 0.155
467 D -0.889
468 A 1.394
469 G 1.409
470 G -0.069
471 K -0.440
472 H -0.755
473 S 0.347
474 L -1.112
475 E -0.914
476 C 1.713
477 T 0.631
478 L 2.121
479 I 1.004
480 L 1.304
481 T 1.454
482 E 2.252
483 G 2.677
484 D 1.275
485 S 2.677
486 A 2.677
487 K 0.267
488 S 0.228
489 L 0.044
490 A 0.681
491 V -0.008
492 S 0.221
493 G 1.979
494 L 0.387
495 G 0.036
496 V -0.198
497 I -0.155
498 G 0.185
499 R 0.040
500 D 0.280
501 R -0.560
502 Y 0.673
503 G 2.677
504 V 1.025
505 F 1.551
506 P 2.677
507 L 1.280
508 R 1.049
509 G 2.248
510 K 2.677
511 I 0.256
512 L 0.382
513 N 2.123
514 V 1.324
515 R 1.410
516 E 0.479
517 A -0.271
518 S -0.342
519 H -0.941
520 K -0.636
521 Q -0.031
522 I 0.200
523 M -0.501
524 E -0.383
525 N 1.011
526 A -0.546
527 E 1.862
528 I 0.924
529 N -0.590
530 N -0.384
531 I 0.994
532 I -0.384
533 K -0.379
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1483 Q -1.000 *
1484 T -1.000 *
1485 D -1.000 *
1486 K -1.000 *
1487 V -1.000 *
1488 P -1.000 *
1489 S -1.000 *
1490 K -1.000 *
1491 T -1.000 *
1492 V -1.000 *
1493 A -1.000 *
1494 A -1.000 *
1495 K -1.000 *
1496 K -1.000 *
1497 G -1.000 *
1498 K -1.000 *
1499 P -1.000 *
1500 S -1.000 *
1501 S -1.000 *
1502 D -1.000 *
1503 T -1.000 *
1504 V -1.000 *
1505 P -1.000 *
1506 K -1.000 *
1507 P -1.000 *
1508 K -1.000 *
1509 R -1.000 *
1510 A -1.000 *
1511 P -1.000 *
1512 K -1.000 *
1513 Q -1.000 *
1514 K -1.000 *
1515 K -1.000 *
1516 V -1.000 *
1517 V -1.000 *
1518 E -1.000 *
1519 A -1.000 *
1520 V -1.000 *
1521 N -1.000 *
1522 S -1.000 *
1523 D -1.000 *
1524 S -1.000 *
1525 D -1.000 *
1526 S -1.000 *
1527 E -1.000 *
1528 F -1.000 *
1529 G -1.000 *
1530 I -1.000 *
1531 P -1.000 *
1532 K -1.000 *
1533 K -1.000 *
1534 T -1.000 *
1535 T -1.000 *
1536 T -1.000 *
1537 P -1.000 *
1538 K -1.000 *
1539 G -1.000 *
1540 K -1.000 *
1541 G -1.000 *
1542 R -1.000 *
1543 G -1.000 *
1544 A -1.000 *
1545 K -1.000 *
1546 K -1.000 *
1547 R -1.000 *
1548 K -1.000 *
1549 A -1.000 *
1550 S -1.000 *
1551 G -1.000 *
1552 S -1.000 *
1553 E -1.000 *
1554 N -1.000 *
1555 E -1.000 *
1556 G -1.000 *
1557 D -1.000 *
1558 Y -1.000 *
1559 N -1.000 *
1560 P -1.000 *
1561 G -1.000 *
1562 R -1.000 *
1563 K -1.000 *
1564 T -1.000 *
1565 S -1.000 *
1566 K -1.000 *
1567 T -1.000 *
1568 T -1.000 *
1569 S -1.000 *
1570 K -1.000 *
1571 K -1.000 *
1572 P -1.000 *
1573 K -1.000 *
1574 K -1.000 *
1575 T -1.000 *
1576 S -1.000 *
1577 F -1.000 *
1578 D -1.000 *
1579 Q -1.000 *
1580 D -1.000 *
1581 S -1.000 *
1582 D -1.000 *
1583 V -1.000 *
1584 D -1.000 *
1585 I -1.000 *
1586 F -1.000 *
1587 P -1.000 *
1588 S -1.000 *
1589 D -1.000 *
1590 F -1.000 *
1591 P -1.000 *
1592 T -1.000 *
1593 E -1.000 *
1594 P -1.000 *
1595 P -1.000 *
1596 S -1.000 *
1597 L -1.000 *
1598 P -1.000 *
1599 R -1.000 *
1600 T -1.000 *
1601 G -1.000 *
1602 R -1.000 *
1603 A -1.000 *
1604 R -1.000 *
1605 K -1.000 *
1606 E -1.000 *
1607 V -1.000 *
1608 K -1.000 *
1609 Y -1.000 *
1610 F -1.000 *
1611 A -1.000 *
1612 E -1.000 *
1613 S -1.000 *
1614 D -1.000 *
1615 E -1.000 *
1616 E -1.000 *
1617 E -1.000 *
1618 D -1.000 *
1619 D -1.000 *
1620 V -1.000 *
1621 D -1.000 *
1622 F -1.000 *
1623 A -1.000 *
1624 M -1.000 *
1625 F -1.000 *
1626 N -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 95.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60MAKSGGCGAG AGVGGGNGAL TWVTLFDQNN AAKKEESETA NKNDSSKKLS VERVYQKKTQ70 80 90 100 110 120LEHILLRPDT YIGSVEPLTQ FMWVYDEDVG MNCREVTFVP GLYKIFDEIL VNAADNKQRD130 140 150 160 170 180KNMTCIKVSI DPESNIISIW NNGKGIPVVE HKVEKVYVPA LIFGQLLTSS NYDDDEKKVT190 200 210 220 230 240GGRNGYGAKL CNIFSTKFTV ETACKEYKHS FKQTWMNNMM KTSEAKIKHF DGEDYTCITF250 260 270 280 290 300QPDLSKFKME KLDKDIVALM TRRAYDLAGS CRGVKVMFNG KKLPVNGFRS YVDLYVKDKL310 320 330 340 350 360DETGVALKVI HELANERWDV CLTLSEKGFQ QISFVNSIAT TKGGRHVDYV VDQVVGKLIE370 380 390 400 410 420VVKKKNKAGV SVKPFQVKNH IWVFINCLIE NPTFDSQTKE NMTLQPKSFG SKCQLSEKFF430 440 450 460 470 480KAASNCGIVE SILNWVKFKA QTQLNKKCSS VKYSKIKGIP KLDDANDAGG KHSLECTLIL490 500 510 520 530 540TEGDSAKSLA VSGLGVIGRD RYGVFPLRGK ILNVREASHK QIMENAEINN IIKIVGLQYK550 560 570 580 590 600KSYDDAESLK TLRYGKIMIM TDQDQDGSHI KGLLINFIHH NWPSLLKHGF LEEFITPIVK610 620 630 640 650 660ASKNKQELSF YSIPEFDEWK KHIENQKAWK IKYYKGLGTS TAKEAKEYFA DMERHRILFR670 680 690 700 710 720YAGPEDDAAI TLAFSKKKID DRKEWLTNFM EDRRQRRLHG LPEQFLYGTA TKHLTYNDFI730 740 750 760 770 780NKELILFSNS DNERSIPSLV DGFKPGQRKV LFTCFKRNDK REVKVAQLAG SVAEMSAYHH790 800 810 820 830 840GEQALMMTIV NLAQNFVGSN NINLLQPIGQ FGTRLHGGKD AASPRYIFTM LSTLARLLFP850 860 870 880 890 900AVDDNLLKFL YDDNQRVEPE WYIPIIPMVL INGAEGIGTG WACKLPNYDA REIVNNVRRM910 920 930 940 950 960LDGLDPHPML PNYKNFKGTI QELGQNQYAV SGEIFVVDRN TVEITELPVR TWTQVYKEQV970 980 990 1000 1010 1020LEPMLNGTDK TPALISDYKE YHTDTTVKFV VKMTEEKLAQ AEAAGLHKVF KLQTTLTCNS1030 1040 1050 1060 1070 1080MVLFDHMGCL KKYETVQDIL KEFFDLRLSY YGLRKEWLVG MLGAESTKLN NQARFILEKI1090 1100 1110 1120 1130 1140QGKITIENRS KKDLIQMLVQ RGYESDPVKA WKEAQEKAAE EDETQNQHDD SSSDSGTPSG1150 1160 1170 1180 1190 1200PDFNYILNMS LWSLTKEKVE ELIKQRDAKG REVNDLKRKS PSDLWKEDLA AFVEELDKVE1210 1220 1230 1240 1250 1260SQEREDVLAG MSGKAIKGKV GKPKVKKLQL EETMPSPYGR RIIPEITAMK ADASKKLLKK1270 1280 1290 1300 1310 1320KKGDLDTAAV KVEFDEEFSG APVEGAGEEA LTPSVPINKG PKPKREKKEP GTRVRKTPTS1330 1340 1350 1360 1370 1380SGKPSAKKVK KRNPWSDDES KSESDLEETE PVVIPRDSLL RRAAAERPKY TFDFSEEEDD1390 1400 1410 1420 1430 1440DADDDDDDNN DLEELKVKAS PITNDGEDEF VPSDGLDKDE YTFSPGKSKA TPEKSLHDKK1450 1460 1470 1480 1490 1500SQDFGNLFSF PSYSQKSEDD SAKFDSNEED SASVFSPSFG LKQTDKVPSK TVAAKKGKPS1510 1520 1530 1540 1550 1560SDTVPKPKRA PKQKKVVEAV NSDSDSEFGI PKKTTTPKGK GRGAKKRKAS GSENEGDYNP1570 1580 1590 1600 1610 1620GRKTSKTTSK KPKKTSFDQD SDVDIFPSDF PTEPPSLPRT GRARKEVKYF AESDEEEDDVDFAMFN
3D Structures in PDB
Not Available
Comments
Topoisomerase II relieves DNA torsional stress in replication and transcription. Topoisomerase II-beta is one of two isoforms in humans. The beta isoform is widely expressed and important for differentiation and maturation. Topoisomerase II-beta is a nuclear protein that is excluded from interphase nucleoli. Mirski et al (BBRC, 2003) tested 7 potential NES sequences in Topoisomerase II-beta (segments starting at residues 97, 143, 484, 523, 1034, 1071 and 1215) and found that only the 1034-1044 segment could target GST-GFP out of the nucleus. Mirski et al 2007 showed that Topoisomerase II-beta does not shuttle between the nucleus and the cytoplasm in proliferating cells (heterokaryon shuttling experiments). Ref.2Topoisomerase II binds importin alpha isoforms and exportin/CRM1 but does not shuttle between the nucleus and cytoplasm in proliferating cells., Mirski et al., Exp Cell Res, 2007
References
[1]. "Identification of functional nuclear export sequences in human topoisomerase IIalpha and beta."
Mirski SE, Bielawski JC, Cole SP (2003) Biochem Biophys Res Commun, 306:905-11 PubMed
[2]. "Topoisomerase II binds importin alpha isoforms and exportin/CRM1 but does not shuttle between the nucleus and cytoplasm in proliferating cells."
Mirski SE, Sparks KE, Friedrich B, Kohler M, Mo YY, Beck WT, Cole SP (2007) Exp Cell Res, 313:627-37 PubMed
Mirski SE, Bielawski JC, Cole SP (2003) Biochem Biophys Res Commun, 306:905-11 PubMed
[2]. "Topoisomerase II binds importin alpha isoforms and exportin/CRM1 but does not shuttle between the nucleus and cytoplasm in proliferating cells."
Mirski SE, Sparks KE, Friedrich B, Kohler M, Mo YY, Beck WT, Cole SP (2007) Exp Cell Res, 313:627-37 PubMed
User Input
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