Here we are sharing the intermediate results we generated in the genome project of Papilio glaucus. If you are interested in our results but are having trouble using them, Please contact Qian Cong at congqian1986@gmail.com
Genome assembly V0 (immediate result of the genome assembler) can be downloaded here.
Genome assembly V1 (genome assembly after our improvement) can be downloaded here.
Error-free genome assembly by REAPR (correct errors by consistency with paired-end reads) is here
De novo assembled transcriptomes can be downloaded here.
Transcriptomes assembled with the help of the reference genome can be downloaded here.
SNP calls by SAMtools/BCFtools pipeline (based on assembly_V1) can be downloaded here.
SNP calls by Genome Analysis Toolkit (GATK) (based on assembly_V1) can be downloaded here.
Noval repeats library and Repeat annotations (based on assembly_V1) can be downloaded here.
Transcript-based gene annotations (based on assembly_V1) can be downloaded here.
Homology-based gene annotations (based on assembly_V1) can be downloaded here.
De novo gene predictions (based on assembly_V1) can be downloaded here.
Function annotations of all the predicted genes can be downloaded here.
Orthologous groups from published Lepidoptera species can be downloaded here.
Please cite:
Tiger Swallowtail Genome Reveals Mechanisms for Speciation and Caterpillar Chemical Defense. Cong Q, Borek D, Otwinowski Z, Grishin NV.
Cell Rep. 2015 Feb 12. doi: 10.1016/j.celrep.2015.01.026. [PMID: 25683714]