Here we are sharing the intermediate results we generated in the genome project of Phoebis sennae. If you are interested in our results but are having trouble using them, Please contact Qian Cong at congqian1986@gmail.com
Genome assembly V0 (immediate result of the genome assembler) can be downloaded here.
Genome assembly V1 (genome assembly after our improvement) can be downloaded here.
De novo assembled transcriptomes can be downloaded here.
Transcriptomes assembled with the help of the reference genome can be downloaded here.
The mitochondrial genome can be downloaded here.
SNP calls for specimens used in the comparative study by Genome Analysis Toolkit (GATK) (based on assembly_V1) can be downloaded here.
Noval repeats library and Repeat annotations (based on assembly_V1) can be downloaded here.
Transcript-based gene annotations (based on assembly_V1) can be downloaded here.
Homology-based gene annotations (based on assembly_V1) can be downloaded here.
De novo gene predictions (based on assembly_V1) can be downloaded here.
Function annotations of all the predicted genes can be downloaded here.
Orthologous groups from published Lepidoptera species can be downloaded here.
The alignments used for the trees can be downloaded here.
Please cite:
Speciation in Cloudless Sulphurs gleaned from complete genomes. (2016). Cong Q, Shen J, Warren AD, Borek D, Otwinowski Z, and Grishin NV. Genome Biology and Evolution. doi:10.1093/gbe/evw045.