Results list on SCOP fold level

1:    a.102  alpha/alpha toroid

                multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies

                1 superfamily containg query pattern in this fold

2:    b.53   Ribosomal protein L25-like

                barrel, closed; n=6, S=10; complex topology

                1 superfamily containg query pattern in this fold

3:    b.142  DNA-binding pseudobarrel domain

                core: barrel, open; n=7, S*=10; capped with helices at both ends; partial similarity to the AbrB/MazE/MraZ-like fold (scop_cf 89446)

                1 superfamily containg query pattern in this fold

4:    b.168  HisI-like

                pseudo barrel, capped by an alpha-helix; contains a beta-triangle structure on one side; some topological similarity to the Ribosomal protein L25-like fold (scop_cf 50714) and the N-terminal domain of Glutamine synthetase (scop_sf 54368)

                1 superfamily containg query pattern in this fold

5:    c.1    TIM beta/alpha-barrel

                contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites

                2 superfamily containg query pattern in this fold

6:    d.15   beta-Grasp (ubiquitin-like)

                core: beta(2)-alpha-beta(2); mixed beta-sheet 2143

                13 superfamily containg query pattern in this fold

7:    d.17   Cystatin-like

                Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet

                1 superfamily containg query pattern in this fold

8:    d.58   Ferredoxin-like

                alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

                1 superfamily containg query pattern in this fold

9:    d.113  Nudix

                beta(2)-alpha-beta(3)-alpha; 3 layers: alpha/beta/alpha; mixed sheet ! contains beta-grasp motif

                1 superfamily containg query pattern in this fold

10:   d.152  Aldehyde ferredoxin oxidoreductase, N-terminal domain

                contains sandwich; duplication of alpha+beta motif with single mixed sheet ! motif: beta(2)-alpha-beta(3)-alpha-beta; strand order 216345, strands 1 and 6 are parallel

                1 superfamily containg query pattern in this fold

11:   d.176  Oxidoreductase molybdopterin-binding domain

                unusual fold; contains 3 layers of beta-sheet structure and a beta-grasp like motif

                1 superfamily containg query pattern in this fold

12:   d.220  Metal cation-transporting ATPase, ATP-binding domain N

                unusual fold; core: beta-alpha(2)-beta(3)-alpha(2)-beta(2); 6-stranded antiparallel beta-sheet, order: 165432

                1 superfamily containg query pattern in this fold

13:   d.263  Hypothetical protein Yml108w

                beta(2)-alpha-beta(2)-alpha; 2 layers, alpha/beta; mixed beta-sheet 2143, strands 1 and 4 are parallel

                1 superfamily containg query pattern in this fold

14:   d.269  BtrG-like

                beta-alpha-beta(4)-alpha-beta(2); contains beta-sheet barrel (n=5, S=8)

                1 superfamily containg query pattern in this fold

15:   e.29   beta and beta-prime subunits of DNA dependent RNA-polymerase

                Multidomain subunits of complex domain organization

                1 superfamily containg query pattern in this fold

16:   e.53   QueA-like

                2 domains; d1 (1-64,174-335) [alpha/beta; 3 layers, a/b/a; mixed beta sheet of 9 strands, order: 219863457; strands 1, 5 and 8 are antiparallel to the rest]; d2 (65-142) [all-beta; barrel, closed (n=6, S=10); greek-key; topologically similar to the split barrel fold (scop_cf 50474)

                1 superfamily containg query pattern in this fold

17:   e.58   Viral ssDNA binding protein

                2 domains; d1: [large alpha+beta domain subdivided into the 'head', 'neck' and 'shoulders' regions; in the 'neck', there is an OB-fold interrupted by large insertions]; d2: [all-alpha, 6 helices; orthogonal array]

                1 superfamily containg query pattern in this fold

18:   f.4    Transmembrane beta-barrels

                not a true fold, gathers together transmembrane barrels of different (n,S)

                1 superfamily containg query pattern in this fold

19:   f.11   Anthrax protective antigen

                4 domains; I (res. 14-225) and II (226-487) are beta-sandwiches of similar gamma-crystallin like topologies; III (488-594) has a beta-grasp like fold; IV (595-735) has an Ig-like fold

                1 superfamily containg query pattern in this fold

20:   g.3    Knottins (small inhibitors, toxins, lectins)

                disulfide-bound fold; contains beta-hairpin with two adjacent disulfides

                1 superfamily containg query pattern in this fold

21:   g.37   C2H2 and C2HC zinc fingers

                alpha+beta metal(zinc)-bound fold: beta-hairpin + alpha-helix

                1 superfamily containg query pattern in this fold

22:   i.1    Ribosome and ribosomal fragments

                1 superfamily containg query pattern in this fold

23:   i.8    RNA polymerase

                1 superfamily containg query pattern in this fold

24:   k.45   Ubiquitin

                1 superfamily containg query pattern in this fold