Results list of greek on fold level
Results list on SCOP fold level
1: b.1 Immunoglobulin-like beta-sandwich
sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands
3 superfamily containg query pattern in this fold
2: b.2 Common fold of diphtheria toxin/transcription factors/cytochrome f
sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
3 superfamily containg query pattern in this fold
3: b.3 Prealbumin-like
sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
3 superfamily containg query pattern in this fold
4: b.12 Lipase/lipooxygenase domain (PLAT/LH2 domain)
sandwich; 8 strands in 2 sheets; complex topology ! duplication: has weak internal pseudo twofold symmetry
1 superfamily containg query pattern in this fold
5: b.21 Virus attachment protein globular domain
sandwich, 10 strands in 2 sheets; greek-key
1 superfamily containg query pattern in this fold
6: b.34 SH3-like barrel
barrel, partly opened; n*=4, S*=8; meander ! the last strand is interrupted by a turn of 3-10 helix
1 superfamily containg query pattern in this fold
7: b.40 OB-fold
barrel, closed or partly opened n=5, S=10 or S=8; greek-key
1 superfamily containg query pattern in this fold
8: b.42 beta-Trefoil
barrel, closed; n=6, S=12; and a hairpin triplet; meander ! duplication: has internal pseudo threefold symmetry
8 superfamily containg query pattern in this fold
9: b.43 Reductase/isomerase/elongation factor common domain
barrel, closed; n=6, S=10; greek-key
4 superfamily containg query pattern in this fold
10: b.44 Elongation factor/aminomethyltransferase common domain
barrel, closed; n=6, S=10; greek-key
2 superfamily containg query pattern in this fold
11: b.45 Split barrel-like
barrel; n=6, S=10; greek-key
1 superfamily containg query pattern in this fold
12: b.46 FMT C-terminal domain-like
barrel, open; n*=6, S*=10; greek-key
1 superfamily containg query pattern in this fold
13: b.49 Domain of alpha and beta subunits of F1 ATP synthase-like
barrel, closed; n=6, S=8; greek-key
3 superfamily containg query pattern in this fold
14: b.50 Acid proteases
barrel, closed; n=6, S=10, complex topology
1 superfamily containg query pattern in this fold
15: b.55 PH domain-like barrel
barrel, partly opened; n*=6, S*=12; meander; capped by an alpha-helix
1 superfamily containg query pattern in this fold
16: b.58 PK beta-barrel domain-like
barrel, closed; n=7, S=10; complex topology
1 superfamily containg query pattern in this fold
17: b.68 6-bladed beta-propeller
consists of six 4-stranded beta-sheet motifs; meander
1 superfamily containg query pattern in this fold
18: b.71 Glycosyl hydrolase domain
folded sheet; greek-key
1 superfamily containg query pattern in this fold
19: b.82 Double-stranded beta-helix
one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1 superfamily containg query pattern in this fold
20: b.86 Hedgehog/intein (Hint) domain
complex fold made of five beta-hairpin units and a b-ribbon arc
1 superfamily containg query pattern in this fold
21: b.111 Small protein B (SmpB)
barrel, closed; n=6, S=8, greek-key, partial similarity to the OB-fold
1 superfamily containg query pattern in this fold
22: b.121 Nucleoplasmin-like/VP (viral coat and capsid proteins)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1 superfamily containg query pattern in this fold
23: b.152 Flagellar hook protein flgE
consists of two different domains; d1: [complex fold made of bifurcated beta-sheets]; d2 (inserted into d1): [beta-sandwich; 8 strands in 2 sheets]
1 superfamily containg query pattern in this fold
24: b.169 MFPT repeat-like
consists of two similar pseudo barrel subdomains with structural similarity to a circularly permuted SAND domain (scop_fa 63764)
1 superfamily containg query pattern in this fold
25: d.3 Cysteine proteinases
consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
1 superfamily containg query pattern in this fold
26: d.22 GFP-like
beta-sheet folds into a barrel (n=11, S=14) around the central helix
1 superfamily containg query pattern in this fold
27: d.38 Thioesterase/thiol ester dehydrase-isomerase
core: beta-alpha-beta(4); 2 layers: alpha/beta
1 superfamily containg query pattern in this fold
28: d.61 LigT-like
duplication of beta-alpha-beta-alpha-beta motif: antiparallel beta sheet forms barrel (n=6, S=8) similar to the barrel of prokaryotic DNA topoisomerases I and III
1 superfamily containg query pattern in this fold
29: d.87 CO dehydrogenase flavoprotein C-domain-like
core: beta(3,4)-alpha(3); alpha+beta sandwich
1 superfamily containg query pattern in this fold
30: d.122 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
8-stranded mixed beta-sheet; 2 layers: alpha/beta
1 superfamily containg query pattern in this fold
31: d.131 DNA clamp
contains two helices and two beta sheets ! duplication: fold has internal pseudo two-fold symmetry
1 superfamily containg query pattern in this fold
32: d.142 ATP-grasp
Consists of two subdomains with different alpha+beta folds ! shares functional and structural similarities with the PIPK and protein kinase superfamilies
1 superfamily containg query pattern in this fold
33: d.161 ADC synthase
duplication: contains four repeats of alpha-beta(2)-beta motif arranged in a 4 layer core structure: alpha/beta/beta/alpha; orthogonally packed beta-sheets
1 superfamily containg query pattern in this fold
34: d.212 TolA/TonB C-terminal domain
beta(2)-alpha-beta; 2 layers, alpha/beta; left-handed beta-alpha-beta unit in non-swapped monomer
1 superfamily containg query pattern in this fold
35: d.250 Folate-binding domain
duplication: consists of two beta(2)-alpha-beta(3)-alpha subdomains swapped with the first strands
1 superfamily containg query pattern in this fold
36: d.283 Putative modulator of DNA gyrase, PmbA/TldD
consists of two different alpha+beta domains; d1: [duplication of alpha-beta(3)-alpha motif; 2 layers: a/b; antiparallel beta-sheet, order: 321456; strands 1, 2, 4 and 5 are twice longer than other secondary structures]; d2 [ complex fold; contains beta-barrel (n=5, S=10)]
1 superfamily containg query pattern in this fold
37: e.10 Prokaryotic type I DNA topoisomerase
4 domains: (1) Toprim alpha/beta; (2&4) "winged helix"-like; (3) barrel: n=6, S=8
1 superfamily containg query pattern in this fold
38: e.17 D-aminoacid aminotransferase-like PLP-dependent enzymes
2 domains: (1) alpha+beta: beta3-alpha2-beta2; (2) alpha/beta, a part of its mixed sheet forms barrel: n=6, S=8
1 superfamily containg query pattern in this fold
39: e.35 Membrane penetration protein mu1
4 domains: three intertwined predominately alpha domains and one jelly-roll beta-sandwich
1 superfamily containg query pattern in this fold
40: e.56 YaeB-like
2 domains; d1: [beta-barrel (n=6, S=10), similar to the Reductase/isomerase/elongation factor common domain fold (scop_cf 50412), provides homodimerisation interface]; d2: [alpha+beta (disordered)]
1 superfamily containg query pattern in this fold
41: e.61 ImpE-like
consists of two domains; d1: right-handed superhelix of five helices; d2: pseudo beta-barrel containing structurally similar part to the "Histone-like" proteins from archaea (scop_fa 54161)
1 superfamily containg query pattern in this fold
42: f.10 Viral glycoprotein, central and dimerisation domains
2 intertwined domains; all-beta and alpha+beta
1 superfamily containg query pattern in this fold
43: f.46 HlyD-like secretion proteins
consists of three domains: beta-barrel (res. 29-38,170-259; scop_cf 50412); barrel-sandwich hybrid (39-72,135-169; scop_sf 51230) and long alpha-hairpin (73-134; scop_cf 46556)
1 superfamily containg query pattern in this fold
44: f.47 VP4 membrane interaction domain
2 domains; d1: complexed all-beta fold; d2: coiled-coil (trimeric) helical region
1 superfamily containg query pattern in this fold
45: i.1 Ribosome and ribosomal fragments
1 superfamily containg query pattern in this fold
46: i.3 ATP synthase
1 superfamily containg query pattern in this fold
47: i.8 RNA polymerase
1 superfamily containg query pattern in this fold