Results list of greek on fold level

Results list on SCOP fold level

1:    b.1    Immunoglobulin-like beta-sandwich

                sandwich; 7 strands in 2 sheets; greek-key ! some members of the fold have additional strands

                3 superfamily containg query pattern in this fold

2:    b.2    Common fold of diphtheria toxin/transcription factors/cytochrome f

                sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold

                3 superfamily containg query pattern in this fold

3:    b.3    Prealbumin-like

                sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold

                3 superfamily containg query pattern in this fold

4:    b.12   Lipase/lipooxygenase domain (PLAT/LH2 domain)

                sandwich; 8 strands in 2 sheets; complex topology ! duplication: has weak internal pseudo twofold symmetry

                1 superfamily containg query pattern in this fold

5:    b.21   Virus attachment protein globular domain

                sandwich, 10 strands in 2 sheets; greek-key

                1 superfamily containg query pattern in this fold

6:    b.34   SH3-like barrel

                barrel, partly opened; n*=4, S*=8; meander ! the last strand is interrupted by a turn of 3-10 helix

                1 superfamily containg query pattern in this fold

7:    b.40   OB-fold

                barrel, closed or partly opened n=5, S=10 or S=8; greek-key

                1 superfamily containg query pattern in this fold

8:    b.42   beta-Trefoil

                barrel, closed; n=6, S=12; and a hairpin triplet; meander ! duplication: has internal pseudo threefold symmetry

                8 superfamily containg query pattern in this fold

9:    b.43   Reductase/isomerase/elongation factor common domain

                barrel, closed; n=6, S=10; greek-key

                4 superfamily containg query pattern in this fold

10:   b.44   Elongation factor/aminomethyltransferase common domain

                barrel, closed; n=6, S=10; greek-key

                2 superfamily containg query pattern in this fold

11:   b.45   Split barrel-like

                barrel; n=6, S=10; greek-key

                1 superfamily containg query pattern in this fold

12:   b.46   FMT C-terminal domain-like

                barrel, open; n*=6, S*=10; greek-key

                1 superfamily containg query pattern in this fold

13:   b.49   Domain of alpha and beta subunits of F1 ATP synthase-like

                barrel, closed; n=6, S=8; greek-key

                3 superfamily containg query pattern in this fold

14:   b.50   Acid proteases

                barrel, closed; n=6, S=10, complex topology

                1 superfamily containg query pattern in this fold

15:   b.55   PH domain-like barrel

                barrel, partly opened; n*=6, S*=12; meander; capped by an alpha-helix

                1 superfamily containg query pattern in this fold

16:   b.58   PK beta-barrel domain-like

                barrel, closed; n=7, S=10; complex topology

                1 superfamily containg query pattern in this fold

17:   b.68   6-bladed beta-propeller

                consists of six 4-stranded beta-sheet motifs; meander

                1 superfamily containg query pattern in this fold

18:   b.71   Glycosyl hydrolase domain

                folded sheet; greek-key

                1 superfamily containg query pattern in this fold

19:   b.82   Double-stranded beta-helix

                one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology

                1 superfamily containg query pattern in this fold

20:   b.86   Hedgehog/intein (Hint) domain

                complex fold made of five beta-hairpin units and a b-ribbon arc

                1 superfamily containg query pattern in this fold

21:   b.111  Small protein B (SmpB)

                barrel, closed; n=6, S=8, greek-key, partial similarity to the OB-fold

                1 superfamily containg query pattern in this fold

22:   b.121  Nucleoplasmin-like/VP (viral coat and capsid proteins)

                sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

                1 superfamily containg query pattern in this fold

23:   b.152  Flagellar hook protein flgE

                consists of two different domains; d1: [complex fold made of bifurcated beta-sheets]; d2 (inserted into d1): [beta-sandwich; 8 strands in 2 sheets]

                1 superfamily containg query pattern in this fold

24:   b.169  MFPT repeat-like

                consists of two similar pseudo barrel subdomains with structural similarity to a circularly permuted SAND domain (scop_fa 63764)

                1 superfamily containg query pattern in this fold

25:   d.3    Cysteine proteinases

                consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn

                1 superfamily containg query pattern in this fold

26:   d.22   GFP-like

                beta-sheet folds into a barrel (n=11, S=14) around the central helix

                1 superfamily containg query pattern in this fold

27:   d.38   Thioesterase/thiol ester dehydrase-isomerase

                core: beta-alpha-beta(4); 2 layers: alpha/beta

                1 superfamily containg query pattern in this fold

28:   d.61   LigT-like

                duplication of beta-alpha-beta-alpha-beta motif: antiparallel beta sheet forms barrel (n=6, S=8) similar to the barrel of prokaryotic DNA topoisomerases I and III

                1 superfamily containg query pattern in this fold

29:   d.87   CO dehydrogenase flavoprotein C-domain-like

                core: beta(3,4)-alpha(3); alpha+beta sandwich

                1 superfamily containg query pattern in this fold

30:   d.122  ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase

                8-stranded mixed beta-sheet; 2 layers: alpha/beta

                1 superfamily containg query pattern in this fold

31:   d.131  DNA clamp

                contains two helices and two beta sheets ! duplication: fold has internal pseudo two-fold symmetry

                1 superfamily containg query pattern in this fold

32:   d.142  ATP-grasp

                Consists of two subdomains with different alpha+beta folds ! shares functional and structural similarities with the PIPK and protein kinase superfamilies

                1 superfamily containg query pattern in this fold

33:   d.161  ADC synthase

                duplication: contains four repeats of alpha-beta(2)-beta motif arranged in a 4 layer core structure: alpha/beta/beta/alpha; orthogonally packed beta-sheets

                1 superfamily containg query pattern in this fold

34:   d.212  TolA/TonB C-terminal domain

                beta(2)-alpha-beta; 2 layers, alpha/beta; left-handed beta-alpha-beta unit in non-swapped monomer

                1 superfamily containg query pattern in this fold

35:   d.250  Folate-binding domain

                duplication: consists of two beta(2)-alpha-beta(3)-alpha subdomains swapped with the first strands

                1 superfamily containg query pattern in this fold

36:   d.283  Putative modulator of DNA gyrase, PmbA/TldD

                consists of two different alpha+beta domains; d1: [duplication of alpha-beta(3)-alpha motif; 2 layers: a/b; antiparallel beta-sheet, order: 321456; strands 1, 2, 4 and 5 are twice longer than other secondary structures]; d2 [ complex fold; contains beta-barrel (n=5, S=10)]

                1 superfamily containg query pattern in this fold

37:   e.10   Prokaryotic type I DNA topoisomerase

                4 domains: (1) Toprim alpha/beta; (2&4) "winged helix"-like; (3) barrel: n=6, S=8

                1 superfamily containg query pattern in this fold

38:   e.17   D-aminoacid aminotransferase-like PLP-dependent enzymes

                2 domains: (1) alpha+beta: beta3-alpha2-beta2; (2) alpha/beta, a part of its mixed sheet forms barrel: n=6, S=8

                1 superfamily containg query pattern in this fold

39:   e.35   Membrane penetration protein mu1

                4 domains: three intertwined predominately alpha domains and one jelly-roll beta-sandwich

                1 superfamily containg query pattern in this fold

40:   e.56   YaeB-like

                2 domains; d1: [beta-barrel (n=6, S=10), similar to the Reductase/isomerase/elongation factor common domain fold (scop_cf 50412), provides homodimerisation interface]; d2: [alpha+beta (disordered)]

                1 superfamily containg query pattern in this fold

41:   e.61   ImpE-like

                consists of two domains; d1: right-handed superhelix of five helices; d2: pseudo beta-barrel containing structurally similar part to the "Histone-like" proteins from archaea (scop_fa 54161)

                1 superfamily containg query pattern in this fold

42:   f.10   Viral glycoprotein, central and dimerisation domains

                2 intertwined domains; all-beta and alpha+beta

                1 superfamily containg query pattern in this fold

43:   f.46   HlyD-like secretion proteins

                consists of three domains: beta-barrel (res. 29-38,170-259; scop_cf 50412); barrel-sandwich hybrid (39-72,135-169; scop_sf 51230) and long alpha-hairpin (73-134; scop_cf 46556)

                1 superfamily containg query pattern in this fold

44:   f.47   VP4 membrane interaction domain

                2 domains; d1: complexed all-beta fold; d2: coiled-coil (trimeric) helical region

                1 superfamily containg query pattern in this fold

45:   i.1    Ribosome and ribosomal fragments

                1 superfamily containg query pattern in this fold

46:   i.3    ATP synthase

                1 superfamily containg query pattern in this fold

47:   i.8    RNA polymerase

                1 superfamily containg query pattern in this fold