Results list of plait on fold level
Results list on SCOP fold level
1: b.2 Common fold of diphtheria toxin/transcription factors/cytochrome f
sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
1 superfamily containg query pattern in this fold
2: b.34 SH3-like barrel
barrel, partly opened; n*=4, S*=8; meander ! the last strand is interrupted by a turn of 3-10 helix
1 superfamily containg query pattern in this fold
3: b.57 Herpes virus serine proteinase, assemblin
core: barrel, closed; n=7, S=8; complex topology
1 superfamily containg query pattern in this fold
4: b.82 Double-stranded beta-helix
one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1 superfamily containg query pattern in this fold
5: b.121 Nucleoplasmin-like/VP (viral coat and capsid proteins)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
2 superfamily containg query pattern in this fold
6: b.153 PheT/TilS domain
core: 3 layers; contains beta-sandwich of unusual topology
1 superfamily containg query pattern in this fold
7: c.1 TIM beta/alpha-barrel
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1 superfamily containg query pattern in this fold
8: c.8 The "swivelling" beta/beta/alpha domain
3 layers: b/b/a; the central sheet is parallel, and the other one is antiparallel; there are some variations in topology ! this domain is thought to be mobile in most multi-domain proteins known to contain it
1 superfamily containg query pattern in this fold
9: c.41 Subtilisin-like
3 layers: a/b/a, parallel beta-sheet of 7 strands, order 2314567; left-handed crossover connection between strands 2 & 3
1 superfamily containg query pattern in this fold
10: c.43 CoA-dependent acyltransferases
core: 2 layers, a/b; mixed beta-sheet of 6 strands, order 324561; strands 3 & 6 are antiparallel to the rest
1 superfamily containg query pattern in this fold
11: c.55 Ribonuclease H-like motif
3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
1 superfamily containg query pattern in this fold
12: c.66 S-adenosyl-L-methionine-dependent methyltransferases
core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest
1 superfamily containg query pattern in this fold
13: c.67 PLP-dependent transferases
main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
1 superfamily containg query pattern in this fold
14: c.135 NIF3 (NGG1p interacting factor 3)-like
consist of two intertwined domains; duplication: contains two structural repeats of alpha-beta-(beta-alpha)3 motif with mixed beta-sheet, order: 1432, strand 1 is antiparallel to the rest
1 superfamily containg query pattern in this fold
15: d.16 FAD-linked reductases, C-terminal domain
alpha+beta sandwich
1 superfamily containg query pattern in this fold
16: d.41 alpha/beta-Hammerhead
core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
2 superfamily containg query pattern in this fold
17: d.58 Ferredoxin-like
alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
49 superfamily containg query pattern in this fold
18: d.77 Ribosomal protein L5
beta-alpha-beta(2)-alpha-beta(3)-alpha; 2 layers, alpha/beta; antiparallel beta-sheet: order 231654
1 superfamily containg query pattern in this fold
19: d.86 eIF4e-like
beta(2)-alpha-beta(2)-alpha-beta(2)-alpha-beta-2; 2 layers: alpha/beta; antiparallel sheet: 21356478
1 superfamily containg query pattern in this fold
20: d.89 Origin of replication-binding domain, RBD-like
alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325
1 superfamily containg query pattern in this fold
21: d.94 HPr-like
beta-alpha-beta(2)-alpha-beta-alpha; 2 layers: a/b; antiparallel sheet 1423
1 superfamily containg query pattern in this fold
22: d.128 Glutamine synthetase/guanido kinase
duplication: common core consists of two beta-alpha-beta2-alpha repeats
1 superfamily containg query pattern in this fold
23: d.129 TBP-like
beta-alpha-beta(4)-alpha
5 superfamily containg query pattern in this fold
24: d.137 Monooxygenase (hydroxylase) regulatory protein
corner-like structure formed by two sheets and filled in with 2-3 helices
1 superfamily containg query pattern in this fold
25: d.139 PurM C-terminal domain-like
3 layers: alpha/beta/alpha; partial topological similarity to the ferredoxin-like fold
1 superfamily containg query pattern in this fold
26: d.153 Ntn hydrolase-like
4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
1 superfamily containg query pattern in this fold
27: d.156 S-adenosylmethionine decarboxylase
duplication of beta-alpha-beta(4)-alpha-beta-alpha-beta(2) motif; 4 layers a/b/b/a; antiparallel beta-sheets: order 23451687
1 superfamily containg query pattern in this fold
28: d.185 LuxS/MPP-like metallohydrolase
core: beta-alpha-beta(2)-alpha(2); 2 layers: alpha/beta
1 superfamily containg query pattern in this fold
29: d.218 Nucleotidyltransferase
core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123
1 superfamily containg query pattern in this fold
30: d.250 Folate-binding domain
duplication: consists of two beta(2)-alpha-beta(3)-alpha subdomains swapped with the first strands
1 superfamily containg query pattern in this fold
31: d.256 Ta1353-like
core: beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel beta-sheet of 5 strands; order: 51423;
1 superfamily containg query pattern in this fold
32: d.261 Hypothetical protein PH1602
complex alpha+beta fold; contains a region of similarity to the ferredoxin-like fold
1 superfamily containg query pattern in this fold
33: d.264 Prim-pol domain
consists of two alpha+beta domains
1 superfamily containg query pattern in this fold
34: d.265 Pseudouridine synthase
consists of two alpha+beta subdomains with some similarity to the ferredoxin-like fold
1 superfamily containg query pattern in this fold
35: d.272 Dystroglycan, domain 2
beta-alpha-beta-X-beta(2)-alpha(2)-beta; antiparallel beta-sheet, order 24153; topological similarity to the ferredoxin-like fold (scop_cf 54861)
1 superfamily containg query pattern in this fold
36: d.280 Sulfolobus fructose-1,6-bisphosphatase-like
4 layers: a/b/b/a; antiparallel beta sheets; similarities to ferredoxin-like fold (scop_cf 54861) in the N-terminal part (1-120) and to the Bacterial S-adenosylmethionine decarboxylase subunit (scop_fa 997656) in the C-terminal part (121-340)
1 superfamily containg query pattern in this fold
37: d.308 THUMP domain
contains mixed 8-stranded beta-sheet, folded into a half-barrel and covered with 4 helices on the outside; order 32148756; strands 5, 6 and 7 are parallel
1 superfamily containg query pattern in this fold
38: d.310 VC0467-like
complex fold; contains bifurcated beta-sheet structure folded into pseudo barrel
1 superfamily containg query pattern in this fold
39: e.8 DNA/RNA polymerases
divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
1 superfamily containg query pattern in this fold
40: e.29 beta and beta-prime subunits of DNA dependent RNA-polymerase
Multidomain subunits of complex domain organization
1 superfamily containg query pattern in this fold
41: e.38 Release factor
4 domains: (1) 3-helical bundle; (2) alpha+beta of ferredoxin-like fold (3 and 4) alpha+beta of dsRDB-like fold
1 superfamily containg query pattern in this fold
42: e.57 Vacuolar ATP synthase subunit C
2 alpha+beta (sub)domains [each has a ferredoxin-like fold; scop_cf 54861], connected with 3-helical bundle; duplication: two repeats of beta-alpha-beta-[alpha coiled-coil]-beta-alpha-beta motif
1 superfamily containg query pattern in this fold
43: i.1 Ribosome and ribosomal fragments
1 superfamily containg query pattern in this fold
44: i.7 Reovirus components
1 superfamily containg query pattern in this fold
45: i.11 Computational models partly based on NMR data
1 superfamily containg query pattern in this fold
46: k.43 Carboxypeptidase A prodomain-based design
1 superfamily containg query pattern in this fold