Results list of plait on fold level

Results list on SCOP fold level

1:    b.2    Common fold of diphtheria toxin/transcription factors/cytochrome f

                sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold

                1 superfamily containg query pattern in this fold

2:    b.34   SH3-like barrel

                barrel, partly opened; n*=4, S*=8; meander ! the last strand is interrupted by a turn of 3-10 helix

                1 superfamily containg query pattern in this fold

3:    b.57   Herpes virus serine proteinase, assemblin

                core: barrel, closed; n=7, S=8; complex topology

                1 superfamily containg query pattern in this fold

4:    b.82   Double-stranded beta-helix

                one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology

                1 superfamily containg query pattern in this fold

5:    b.121  Nucleoplasmin-like/VP (viral coat and capsid proteins)

                sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

                2 superfamily containg query pattern in this fold

6:    b.153  PheT/TilS domain

                core: 3 layers; contains beta-sandwich of unusual topology

                1 superfamily containg query pattern in this fold

7:    c.1    TIM beta/alpha-barrel

                contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites

                1 superfamily containg query pattern in this fold

8:    c.8    The "swivelling" beta/beta/alpha domain

                3 layers: b/b/a; the central sheet is parallel, and the other one is antiparallel; there are some variations in topology ! this domain is thought to be mobile in most multi-domain proteins known to contain it

                1 superfamily containg query pattern in this fold

9:    c.41   Subtilisin-like

                3 layers: a/b/a, parallel beta-sheet of 7 strands, order 2314567; left-handed crossover connection between strands 2 & 3

                1 superfamily containg query pattern in this fold

10:   c.43   CoA-dependent acyltransferases

                core: 2 layers, a/b; mixed beta-sheet of 6 strands, order 324561; strands 3 & 6 are antiparallel to the rest

                1 superfamily containg query pattern in this fold

11:   c.55   Ribonuclease H-like motif

                3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

                1 superfamily containg query pattern in this fold

12:   c.66   S-adenosyl-L-methionine-dependent methyltransferases

                core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest

                1 superfamily containg query pattern in this fold

13:   c.67   PLP-dependent transferases

                main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

                1 superfamily containg query pattern in this fold

14:   c.135  NIF3 (NGG1p interacting factor 3)-like

                consist of two intertwined domains; duplication: contains two structural repeats of alpha-beta-(beta-alpha)3 motif with mixed beta-sheet, order: 1432, strand 1 is antiparallel to the rest

                1 superfamily containg query pattern in this fold

15:   d.16   FAD-linked reductases, C-terminal domain

                alpha+beta sandwich

                1 superfamily containg query pattern in this fold

16:   d.41   alpha/beta-Hammerhead

                core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids

                2 superfamily containg query pattern in this fold

17:   d.58   Ferredoxin-like

                alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

                49 superfamily containg query pattern in this fold

18:   d.77   Ribosomal protein L5

                beta-alpha-beta(2)-alpha-beta(3)-alpha; 2 layers, alpha/beta; antiparallel beta-sheet: order 231654

                1 superfamily containg query pattern in this fold

19:   d.86   eIF4e-like

                beta(2)-alpha-beta(2)-alpha-beta(2)-alpha-beta-2; 2 layers: alpha/beta; antiparallel sheet: 21356478

                1 superfamily containg query pattern in this fold

20:   d.89   Origin of replication-binding domain, RBD-like

                alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325

                1 superfamily containg query pattern in this fold

21:   d.94   HPr-like

                beta-alpha-beta(2)-alpha-beta-alpha; 2 layers: a/b; antiparallel sheet 1423

                1 superfamily containg query pattern in this fold

22:   d.128  Glutamine synthetase/guanido kinase

                duplication: common core consists of two beta-alpha-beta2-alpha repeats

                1 superfamily containg query pattern in this fold

23:   d.129  TBP-like

                beta-alpha-beta(4)-alpha

                5 superfamily containg query pattern in this fold

24:   d.137  Monooxygenase (hydroxylase) regulatory protein

                corner-like structure formed by two sheets and filled in with 2-3 helices

                1 superfamily containg query pattern in this fold

25:   d.139  PurM C-terminal domain-like

                3 layers: alpha/beta/alpha; partial topological similarity to the ferredoxin-like fold

                1 superfamily containg query pattern in this fold

26:   d.153  Ntn hydrolase-like

                4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing

                1 superfamily containg query pattern in this fold

27:   d.156  S-adenosylmethionine decarboxylase

                duplication of beta-alpha-beta(4)-alpha-beta-alpha-beta(2) motif; 4 layers a/b/b/a; antiparallel beta-sheets: order 23451687

                1 superfamily containg query pattern in this fold

28:   d.185  LuxS/MPP-like metallohydrolase

                core: beta-alpha-beta(2)-alpha(2); 2 layers: alpha/beta

                1 superfamily containg query pattern in this fold

29:   d.218  Nucleotidyltransferase

                core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123

                1 superfamily containg query pattern in this fold

30:   d.250  Folate-binding domain

                duplication: consists of two beta(2)-alpha-beta(3)-alpha subdomains swapped with the first strands

                1 superfamily containg query pattern in this fold

31:   d.256  Ta1353-like

                core: beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel beta-sheet of 5 strands; order: 51423;

                1 superfamily containg query pattern in this fold

32:   d.261  Hypothetical protein PH1602

                complex alpha+beta fold; contains a region of similarity to the ferredoxin-like fold

                1 superfamily containg query pattern in this fold

33:   d.264  Prim-pol domain

                consists of two alpha+beta domains

                1 superfamily containg query pattern in this fold

34:   d.265  Pseudouridine synthase

                consists of two alpha+beta subdomains with some similarity to the ferredoxin-like fold

                1 superfamily containg query pattern in this fold

35:   d.272  Dystroglycan, domain 2

                beta-alpha-beta-X-beta(2)-alpha(2)-beta; antiparallel beta-sheet, order 24153; topological similarity to the ferredoxin-like fold (scop_cf 54861)

                1 superfamily containg query pattern in this fold

36:   d.280  Sulfolobus fructose-1,6-bisphosphatase-like

                4 layers: a/b/b/a; antiparallel beta sheets; similarities to ferredoxin-like fold (scop_cf 54861) in the N-terminal part (1-120) and to the Bacterial S-adenosylmethionine decarboxylase subunit (scop_fa 997656) in the C-terminal part (121-340)

                1 superfamily containg query pattern in this fold

37:   d.308  THUMP domain

                contains mixed 8-stranded beta-sheet, folded into a half-barrel and covered with 4 helices on the outside; order 32148756; strands 5, 6 and 7 are parallel

                1 superfamily containg query pattern in this fold

38:   d.310  VC0467-like

                complex fold; contains bifurcated beta-sheet structure folded into pseudo barrel

                1 superfamily containg query pattern in this fold

39:   e.8    DNA/RNA polymerases

                divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

                1 superfamily containg query pattern in this fold

40:   e.29   beta and beta-prime subunits of DNA dependent RNA-polymerase

                Multidomain subunits of complex domain organization

                1 superfamily containg query pattern in this fold

41:   e.38   Release factor

                4 domains: (1) 3-helical bundle; (2) alpha+beta of ferredoxin-like fold (3 and 4) alpha+beta of dsRDB-like fold

                1 superfamily containg query pattern in this fold

42:   e.57   Vacuolar ATP synthase subunit C

                2 alpha+beta (sub)domains [each has a ferredoxin-like fold; scop_cf 54861], connected with 3-helical bundle; duplication: two repeats of beta-alpha-beta-[alpha coiled-coil]-beta-alpha-beta motif

                1 superfamily containg query pattern in this fold

43:   i.1    Ribosome and ribosomal fragments

                1 superfamily containg query pattern in this fold

44:   i.7    Reovirus components

                1 superfamily containg query pattern in this fold

45:   i.11   Computational models partly based on NMR data

                1 superfamily containg query pattern in this fold

46:   k.43   Carboxypeptidase A prodomain-based design

                1 superfamily containg query pattern in this fold