Results list of plait on superfamily level
Results list on SCOP superfamily level
1: b.2.6 Cytochrome f, large domain
2: b.34.14 PAZ domain
3: b.57.1 Herpes virus serine proteinase, assemblin
4: b.82.2 Clavaminate synthase-like
Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
5: b.121.2 Group II dsDNA viruses VP
duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits ! trimeric; in the trimers, the domains are arranged around pseudo six-fold axis
6: b.121.4 Positive stranded ssRNA viruses
7: b.153.1 PheT/TilS domain
contains putative tRNA-binding structural motif
8: c.1.10 Aldolase
Common fold covers whole protein structure
9: c.8.5 GroEL apical domain-like
10: c.41.1 Subtilisin-like
11: c.43.1 CoA-dependent acyltransferases
12: c.55.3 Ribonuclease H-like
consists of one domain of this fold
13: c.66.1 S-adenosyl-L-methionine-dependent methyltransferases
14: c.67.1 PLP-dependent transferases
15: c.135.1 NIF3 (NGG1p interacting factor 3)-like
di-iron binding protein
16: d.16.1 FAD-linked reductases, C-terminal domain
N-terminal domain is beta/beta/alpha common fold
17: d.41.2 Nicotinate/Quinolinate PRTase N-terminal domain-like
18: d.41.4 Ribosomal protein L16p/L10e
19: d.58.2 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
20: d.58.3 Protease propeptides/inhibitors
21: d.58.4 Dimeric alpha+beta barrel
dimerizes through the beta-sheet; forms beta-sheet barrel, closed (n=8, S=12); dimers may assemble in higher oligomers
22: d.58.5 GlnB-like
form timeric structures with the orthogonally packed beta-sheets
23: d.58.6 Nucleoside diphosphate kinase, NDK
24: d.58.7 RNA-binding domain, RBD
25: d.58.8 Viral DNA-binding domain
26: d.58.9 RuBisCO, large subunit, small (N-terminal) domain
C-terminal domain is beta/alpha barrel
27: d.58.10 Acylphosphatase/BLUF domain-like
28: d.58.11 EF-G C-terminal domain-like
29: d.58.12 eEF-1beta-like
30: d.58.13 Anticodon-binding domain of PheRS
31: d.58.14 Ribosomal protein S6
32: d.58.16 PAP/Archaeal CCA-adding enzyme, C-terminal domain
33: d.58.17 HMA, heavy metal-associated domain
34: d.58.18 ACT-like
regulatory domain linked to a wide range of metabolic enzymes
35: d.58.19 Bacterial exopeptidase dimerisation domain
36: d.58.20 NAD-binding domain of HMG-CoA reductase
37: d.58.21 Molybdenum cofactor biosynthesis protein C, MoaC
38: d.58.22 TRADD, N-terminal domain
39: d.58.23 Probable ACP-binding domain of malonyl-CoA ACP transacylase
40: d.58.24 CheY-binding domain of CheA
41: d.58.25 Killer toxin KP6 alpha-subunit
42: d.58.26 GHMP Kinase, C-terminal domain
common fold is elaborated with additional secondary structures
43: d.58.28 Peptide methionine sulfoxide reductase
common fold is elaborated with additional secondary structures
44: d.58.29 Nucleotide cyclase
common fold is elaborated with additional secondary structures
45: d.58.30 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
common fold is elaborated with additional secondary structures
46: d.58.31 Methyl-coenzyme M reductase subunits
each of the three different subunits, alpha, beta and gamma, contains this fold decorated with additional secondary structures
47: d.58.32 FAD-linked oxidases, C-terminal domain
duplication: contains two subdomains of this fold
48: d.58.33 Formylmethanofuran:tetrahydromethanopterin formyltransferase
duplication: contains two subdomains of this fold
49: d.58.34 Formiminotransferase domain of formiminotransferase-cyclodeaminase.
duplication: contains two subdomains of this fold
50: d.58.38 Urease metallochaperone UreE, C-terminal domain
51: d.58.39 Glutamyl tRNA-reductase catalytic, N-terminal domain
common fold is elaborated with additional secondary structures
52: d.58.40 D-ribose-5-phosphate isomerase (RpiA), lid domain
53: d.58.41 SEA domain
54: d.58.42 N-utilization substance G protein NusG, N-terminal domain
55: d.58.44 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
duplication: the N- and C-terminal halves of the whole proteins are structurally similar; each half contains two domains of this fold
56: d.58.46 eEF1-gamma domain
elaborated with additional structures
57: d.58.48 MTH1187/YkoF-like
58: d.58.49 YajQ-like
duplication: consists of two domains of this fold swapped with their N-terminal strands
59: d.58.50 Hypothetical protein TT1725
60: d.58.51 eIF-2-alpha, C-terminal domain
61: d.58.52 Sporulation related repeat
duplication: one domain contains two repeats of similar sequence and structure
62: d.58.53 CRISPR-associated protein
duplication: contains two subdomains of this fold
63: d.58.54 YbeD-like
64: d.58.55 DOPA-like
probable biological unit is homodimer; the extra C-terminal strand, adjacent and antiparallel to strand 4, contributes to the dimerisation interface
65: d.58.56 CcmK-like
contains extra C-terminal helix; forms compact hexameric 'tiles' of hexagonal shape
66: d.58.57 Transposase IS200-like
contains extra N-terminal hairpin and C-terminal helix, both are involved in dimerization; there can be helix-swapping in the dimer
67: d.58.58 TTP0101/SSO1404-like
contains extra C-terminal beta-strand that integrates into the beta-sheet of the other subunit in the homodimer, a probable biological unit of this superfamily
68: d.77.1 Ribosomal protein L5
69: d.86.1 eIF4e-like
70: d.89.1 Origin of replication-binding domain, RBD-like
71: d.94.1 HPr-like
72: d.128.1 Glutamine synthetase/guanido kinase
73: d.129.1 TATA-box binding protein-like
74: d.129.2 Phosphoglucomutase, C-terminal domain
contains a single copy of this fold and an extra beta-strand at the C-terminus
75: d.129.4 Cell-division protein ZipA, C-terminal domain
contains a single copy of this fold
76: d.129.6 Kinase associated domain 1, KA1
contains a single copy of this fold
77: d.129.9 RalF, C-terminal domain
contains a single copy of this fold decorated with additional structures
78: d.137.1 Monooxygenase (hydroxylase) regulatory protein
duplication: consists of two beta-alpha-(beta)-beta(2) motifs; some topological similarity to the ferredoxin-like fold
79: d.139.1 PurM C-terminal domain-like
80: d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
N-terminal residue provides two catalytic groups, nucleophile and proton donor
81: d.156.1 S-adenosylmethionine decarboxylase
82: d.185.1 LuxS/MPP-like metallohydrolase
Share the same "active site motif" HxxEH located in the first core helix, but differ in one of the zinc-binding residues
83: d.218.1 Nucleotidyltransferase
84: d.250.1 Folate-binding domain
some topological similarity to Formylmethanofuran:tetrahydromethanopterin formyltransferase
85: d.256.1 Ta1353-like
86: d.261.1 Hypothetical protein PH1602
87: d.264.1 Prim-pol domain
88: d.265.1 Pseudouridine synthase
the active site is the most conserved structural region of the superfamily and is located between the subdomains
89: d.272.1 Dystroglycan, domain 2
90: d.280.1 Sulfolobus fructose-1,6-bisphosphatase-like
91: d.308.1 THUMP domain-like
predicted RNA-binding function
92: d.310.1 VC0467-like
93: e.8.1 DNA/RNA polymerases
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
94: e.29.1 beta and beta-prime subunits of DNA dependent RNA-polymerase
The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit
95: e.38.1 Release factor
96: e.57.1 Vacuolar ATP synthase subunit C
97: i.1.1 Ribosome and ribosomal fragments
98: i.7.1 Reovirus components
99: i.11.1 Computational models partly based on NMR data
100: k.43.1 Carboxypeptidase A prodomain-based design