Results list of ross on fold level

Results list on SCOP fold level

1:    c.2    NAD(P)-binding Rossmann-fold domains

                core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456 ! The nucleotide-binding modes of this and the next two folds/superfamilies are similar

                1 superfamily containg query pattern in this fold

2:    c.4    Nucleotide-binding domain

                3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; Rossmann-like

                1 superfamily containg query pattern in this fold

3:    c.5    MurCD N-terminal domain

                3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; incomplete Rossmann-like fold; binds UDP group

                1 superfamily containg query pattern in this fold

4:    c.19   FabD/lysophospholipase-like

                core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 432156; strand 4 is antiparallel to the rest

                1 superfamily containg query pattern in this fold

5:    c.23   Flavodoxin-like

                3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345

                3 superfamily containg query pattern in this fold

6:    c.24   Methylglyoxal synthase-like

                3 layers, a/b/a; parallel beta-sheet of 5 strands, order 32145

                1 superfamily containg query pattern in this fold

7:    c.25   Ferredoxin reductase-like, C-terminal NADP-linked domain

                3 layers, a/b/a; parallel beta-sheet of 5 strands, order 32145

                1 superfamily containg query pattern in this fold

8:    c.26   Adenine nucleotide alpha hydrolase-like

                core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145

                2 superfamily containg query pattern in this fold

9:    c.27   Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain

                3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; Rossmann-like

                1 superfamily containg query pattern in this fold

10:   c.28   Cryptochrome/photolyase, N-terminal domain

                3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; Rossmann-like

                1 superfamily containg query pattern in this fold

11:   c.30   PreATP-grasp domain

                3 layers: a/b/a; parallel or mixed beta-sheet of 4 to 6 strands ! possible rudiment form of Rossmann-fold domain

                1 superfamily containg query pattern in this fold

12:   c.31   DHS-like NAD/FAD-binding domain

                3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456; Rossmann-like

                1 superfamily containg query pattern in this fold

13:   c.32   Tubulin nucleotide-binding domain-like

                3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456

                1 superfamily containg query pattern in this fold

14:   c.33   Isochorismatase-like hydrolases

                3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456

                1 superfamily containg query pattern in this fold

15:   c.34   Homo-oligomeric flavin-containing Cys decarboxylases, HFCD

                3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456

                1 superfamily containg query pattern in this fold

16:   c.37   P-loop containing nucleoside triphosphate hydrolases

                3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

                1 superfamily containg query pattern in this fold

17:   c.40   Methylesterase CheB, C-terminal domain

                3 layers: a/b/a, parallel beta-sheet of 7 strands, order 3421567

                1 superfamily containg query pattern in this fold

18:   c.42   Arginase/deacetylase

                3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456

                1 superfamily containg query pattern in this fold

19:   c.52   Restriction endonuclease-like

                core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest

                1 superfamily containg query pattern in this fold

20:   c.65   Formyltransferase

                3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214567; strand 6 is antiparallel to the rest

                1 superfamily containg query pattern in this fold

21:   c.66   S-adenosyl-L-methionine-dependent methyltransferases

                core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest

                1 superfamily containg query pattern in this fold

22:   c.70   Nucleoside hydrolase

                core: 3 layers, a/b/a ; mixed beta-sheet of 8 strands, order 32145687; strand 7 is antiparallel to the rest

                1 superfamily containg query pattern in this fold

23:   c.72   Ribokinase-like

                core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest ! potential superfamily: members of this fold have similar functions but different ATP-binding sites

                2 superfamily containg query pattern in this fold

24:   c.73   Carbamate kinase-like

                3 layers: a/b/a; mixed (mainly parallel) beta-sheet of 8 strands, order 34215786; strand 8 is antiparallel to the rest

                1 superfamily containg query pattern in this fold

25:   c.77   Isocitrate/Isopropylmalate dehydrogenase-like

                consists of two intertwined (sub)domains related by pseudo dyad; duplication ! 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest

                1 superfamily containg query pattern in this fold

26:   c.78   ATC-like

                consists of two similar domains related by pseudo dyad; duplication ! core: 3 layers, a/b/a, parallel beta-sheet of 4 strands, order 2134

                1 superfamily containg query pattern in this fold

27:   c.81   Formate dehydrogenase/DMSO reductase, domains 1-3

                contains of two similar intertwined domains related by pseudo dyad; duplication ! core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32451

                1 superfamily containg query pattern in this fold

28:   c.82   ALDH-like

                consists of two similar domains with 3 layers (a/b/a) each; duplication ! core: parallel beta-sheet of 5 strands, order 32145

                1 superfamily containg query pattern in this fold

29:   c.83   Aconitase iron-sulfur domain

                consists of three similar domains with 3 layers (a/b/a) each; duplication ! core: parallel beta-sheet of 5 strands, order 32145

                1 superfamily containg query pattern in this fold

30:   c.86   Phosphoglycerate kinase

                consists of two non-similar domains, 3 layers (a/b/a) each ! Domain 1 has parallel beta-sheet of 6 strands, order 342156 ! Domain 2 has parallel beta-sheet of 6 strands, order 321456

                1 superfamily containg query pattern in this fold

31:   c.87   UDP-Glycosyltransferase/glycogen phosphorylase

                consists of two non-similar domains with 3 layers (a/b/a) each ! domain 1: parallel beta-sheet of 7 strands, order 3214567 ! domain 2: parallel beta-sheet of 6 strands, order 321456

                1 superfamily containg query pattern in this fold

32:   c.92   Chelatase-like

                duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134

                1 superfamily containg query pattern in this fold

33:   c.100  Thiamin pyrophosphokinase, catalytic domain

                3 layers: a/b/a; parallel beta-sheet of 6 strands, order 432156

                1 superfamily containg query pattern in this fold

34:   c.104  YjeF N-terminal domain-like

                3 layers: a/b/a; mixed (mainly parallel) beta-sheet of 8 strands, order 32145678; strand 8 is antiparallel to the rest

                1 superfamily containg query pattern in this fold

35:   c.105  2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain

                core:3 layers: a/b/a; mixed beta-sheet of 8 strands, order 45321678, strands 4 and 5 are antiparallel to the rest

                1 superfamily containg query pattern in this fold

36:   c.108  HAD-like

                3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456

                1 superfamily containg query pattern in this fold

37:   c.111  Activating enzymes of the ubiquitin-like proteins

                3 layers: a/b/a; mixed beta-sheet of 8 strands, order 32145678; strands 6 and 8 are antiparallel to the rest

                1 superfamily containg query pattern in this fold

38:   c.113  HemD-like

                duplication: consists of two similar 'swapped' domain with 3 layers (a/b/a) each; parallel beta-sheet of 5 strands, order 21345

                1 superfamily containg query pattern in this fold

39:   c.115  Hypothetical protein MTH777 (MT0777)

                3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456

                1 superfamily containg query pattern in this fold

40:   c.118  GckA/TtuD-like

                consists of two non-similar domains ! Domain 1 has parallel sheet of 6 strands, order 321456, Rossmann-like topology ! Domain 2 has mixed sheet of 6 strands, order 126345; strands 5 and 6 are antiparallel to the rest; some similarity to CbiF Domain 2

                1 superfamily containg query pattern in this fold

41:   c.120  PIN domain-like

                3 layers, a/b/a; core: parallel beta-sheet of 5 strands, order 32145

                1 superfamily containg query pattern in this fold

42:   c.123  CoA-transferase family III (CaiB/BaiF)

                consist of two different alpha/beta domains; N-terminal domain has a SurE-like topology with a left-handed beta-alpha-beta unit

                1 superfamily containg query pattern in this fold

43:   c.124  NagB/RpiA/CoA transferase-like

                core: 3 layers: a/b/a; parallel or mixed beta-sheet of 6 strands, order 321456

                1 superfamily containg query pattern in this fold

44:   c.129  MoCo carrier protein-like

                3 layers: a/b/a, parallel beta-sheet of 7 strands, order 4321567

                1 superfamily containg query pattern in this fold

45:   c.130  Alpha-2,3/8-sialyltransferase CstII

                3 layers: a/b/a; parallel beta-sheet of 8 strands, order 54321678

                1 superfamily containg query pattern in this fold

46:   c.134  LmbE-like

                3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest; topological similarity to SAM-dependent methyltransferases

                1 superfamily containg query pattern in this fold

47:   c.143  CofD-like

                3 layers: a/b/a, parallel beta-sheet of 7 strands, order 3214567; topological similarity to the CobT-like fold (scop_cf 52732)

                1 superfamily containg query pattern in this fold

48:   e.26   Prismane protein-like

                3 domains: (1) spectrin repeat-like 3-helical bundle; (2 and 3) alpha/beta: Rossmann-fold topology

                1 superfamily containg query pattern in this fold

49:   e.50   AF1104-like

                2 domains; d1: [all-alpha; 3-helical bundle, similar to the immunoglobulin/albumin-binding domain-like fold (scop_cf 46996)]; d2: [alpha/beta; 3 layers, a/b/a; 6-stranded mixed beta-sheet, order: 321456, strand 6 is antiparallel to the rest]

                1 superfamily containg query pattern in this fold

50:   e.51   Urocanase

                3 domains; d1: alpha+beta [alpha(2)-beta(3); mixed sheet: 213]; d2: alpha/beta of the NAD(P)-binding Rossmann-fold superfamily (scop_sf 51735, most similar to scop_fa 51883 and scop_fa 51736); d3: alpha+beta of the glutamine synthetase/guanido kinase fold (scop_cf 55930); d1 and d3 form a single beta-sheet

                1 superfamily containg query pattern in this fold

51:   i.10   Microtubule complexes

                1 superfamily containg query pattern in this fold

52:   i.12   Proteins of incorrect, partial and unknown sequence

                1 superfamily containg query pattern in this fold

53:   i.18   Membrane ion ATPase

                1 superfamily containg query pattern in this fold

54:   i.26   Fatty acid synthase

                1 superfamily containg query pattern in this fold