Results list on SCOP superfamily level

1:    c.2.1      NAD(P)-binding Rossmann-fold domains

2:    c.4.1      Nucleotide-binding domain

                    this superfamily shares the common nucleotide-binding site with and provides a link between the Rossmann-fold NAD(P)-binding and FAD/NAD(P)-binding domains

3:    c.5.1      MurCD N-terminal domain

4:    c.19.1     FabD/lysophospholipase-like

5:    c.23.5     Flavoproteins

6:    c.23.12    Formate/glycerate dehydrogenase catalytic domain-like

7:    c.23.16    Class I glutamine amidotransferase-like

                    conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures

8:    c.24.1     Methylglyoxal synthase-like

                    contains a common phosphate-binding site

9:    c.25.1     Ferredoxin reductase-like, C-terminal NADP-linked domain

                    binds NADP differently than classical Rossmann-fold ! N-terminal FAD-linked domain contains (6,10) barrel

10:   c.26.1     Nucleotidylyl transferase

11:   c.26.2     Adenine nucleotide alpha hydrolases-like

                    share similar mode of ligand (Adenosine group) binding ! can be subdivided into two group with closer relationships within each group than between the groups; the first three families form one group whereas the last two families form the other group

12:   c.27.1     Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain

13:   c.28.1     Cryptochrome/photolyase, N-terminal domain

14:   c.30.1     PreATP-grasp domain

                    precedes the ATP-grasp domain common to all superfamily members, can contain a substrate-binding function

15:   c.31.1     DHS-like NAD/FAD-binding domain

                    binds cofactor molecules in the opposite direction than classical Rossmann fold

16:   c.32.1     Tubulin nucleotide-binding domain-like

17:   c.33.1     Isochorismatase-like hydrolases

18:   c.34.1     Homo-oligomeric flavin-containing Cys decarboxylases, HFCD

19:   c.37.1     P-loop containing nucleoside triphosphate hydrolases

                    division into families based on beta-sheet topologies

20:   c.40.1     Methylesterase CheB, C-terminal domain

21:   c.42.1     Arginase/deacetylase

22:   c.52.1     Restriction endonuclease-like

23:   c.65.1     Formyltransferase

24:   c.66.1     S-adenosyl-L-methionine-dependent methyltransferases

25:   c.70.1     Nucleoside hydrolase

26:   c.72.1     Ribokinase-like

                    has extra strand located between strands 2 and 3

27:   c.72.3     CoaB-like

                    combination of the Rossmann-like and Ribokinase-like topologies; mixed beta-sheet of 8 strands, order 32145678, strand 7 is antiparallel to the rest

28:   c.73.1     Carbamate kinase-like

                    the sheet topology is similar to those of undecaprenyl diphosphate synthase and the N-terminal domain of phosphoglycerate kinase

29:   c.77.1     Isocitrate/Isopropylmalate dehydrogenase-like

                    the constituent families form similar dimers

30:   c.78.1     Aspartate/ornithine carbamoyltransferase

31:   c.81.1     Formate dehydrogenase/DMSO reductase, domains 1-3

                    molybdopterine enzyme

32:   c.82.1     ALDH-like

                    binds NAD differently from other NAD(P)-dependent oxidoreductases

33:   c.83.1     Aconitase iron-sulfur domain

34:   c.86.1     Phosphoglycerate kinase

35:   c.87.1     UDP-Glycosyltransferase/glycogen phosphorylase

36:   c.92.2     "Helical backbone" metal receptor

                    contains a long alpha helical insertion in the interdomain linker

37:   c.100.1    Thiamin pyrophosphokinase, catalytic domain

38:   c.104.1    YjeF N-terminal domain-like

                    possible circular permutation of the ribokinase-like fold (of the YjeF C-terminal domain)

39:   c.105.1    2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain

40:   c.108.1    HAD-like

                    usually contains an insertion (sub)domain after strand 1

41:   c.111.1    Activating enzymes of the ubiquitin-like proteins

                    transfer adenylyl group to the C-terminal carboxyl group of the ubiquitin and MoaD/ThiS-related proteins ! the ATP nucleotide-binding site is similar to that of the NAD-binding Rossmann-folds

42:   c.113.1    HemD-like

43:   c.115.1    Hypothetical protein MTH777 (MT0777)

44:   c.118.1    GckA/TtuD-like

45:   c.120.1    PIN domain-like

46:   c.123.1    CoA-transferase family III (CaiB/BaiF)

47:   c.124.1    NagB/RpiA/CoA transferase-like

48:   c.129.1    MoCo carrier protein-like

49:   c.130.1    Alpha-2,3/8-sialyltransferase CstII

50:   c.134.1    LmbE-like

51:   c.143.1    CofD-like

52:   e.26.1     Prismane protein-like

53:   e.50.1     AF1104-like

54:   e.51.1     Urocanase

55:   i.10.1     Microtubule complexes

56:   i.12.1     Proteins of incorrect, partial and unknown sequence

57:   i.18.1     Membrane ion ATPase

58:   i.26.1     Fatty acid synthase