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set ribbon_radius = 0.5 set orthoscopic = 1 bg_color white set opaque_background, off set cartoon_fancy_sheets, 1 set cartoon_fancy_helices, 1 set cartoon_smooth_loops,1 set cartoon_rect_length, 1.2 set cartoon_rect_width, 0.3 set cartoon_dumbbell_length, 1.2 set cartoon_dumbbell_radius, 0.1 set cartoon_dumbbell_width, 0.1 cmd.read_pdbstr("""\ HEADER LIGASE 04-MAY-11 2YHN \ TITLE THE IDOL-UBE2D COMPLEX MEDIATES STEROL-DEPENDENT DEGRADATION OF THE \ TITLE 2 LDL RECEPTOR \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE MYLIP; \ COMPND 3 CHAIN: A, B; \ COMPND 4 FRAGMENT: RING, RESIDUES 369-445; \ COMPND 5 SYNONYM: INDUCIBLE DEGRADER OF THE LDL-RECEPTOR, IDOL, MYOSIN \ COMPND 6 REGULATORY LIGHT CHAIN INTERACTING PROTEIN, MIR; \ COMPND 7 EC: 6.3.2.-; \ COMPND 8 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; \ SOURCE 3 ORGANISM_COMMON: HUMAN; \ SOURCE 4 ORGANISM_TAXID: 9606; \ SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; \ SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; \ SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; \ SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; \ SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX \ KEYWDS LIGASE, E2 LIGASE- E3 LIGASE COMPLEX, RING ZINC-FINGER, UBE2D1, UBL \ KEYWDS 2 CONJUGATION PATHWAY \ EXPDTA X-RAY DIFFRACTION \ AUTHOR L.FAIRALL,B.T.GOULT,C.J.MILLARD,P.TONTONOZ,J.W.R.SCHWABE \ REVDAT 2 20-DEC-23 2YHN 1 REMARK LINK \ REVDAT 1 29-JUN-11 2YHN 0 \ JRNL AUTH L.ZHANG,L.FAIRALL,B.T.GOULT,A.C.CALKIN,C.HONG,C.J.MILLARD, \ JRNL AUTH 2 P.TONTONOZ,J.W.R.SCHWABE \ JRNL TITL THE IDOL-UBE2D COMPLEX MEDIATES STEROL-DEPENDENT DEGRADATION \ JRNL TITL 2 OF THE LDL RECEPTOR. \ JRNL REF GENES DEV. V. 25 1262 2011 \ JRNL REFN ISSN 0890-9369 \ JRNL PMID 21685362 \ JRNL DOI 10.1101/GAD.2056211 \ REMARK 2 \ REMARK 2 RESOLUTION. 3.00 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) \ REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN \ REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, \ REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, \ REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, \ REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, \ REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, \ REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT \ REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : ML \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.37 \ REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.050 \ REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 \ REMARK 3 NUMBER OF REFLECTIONS : 2928 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 \ REMARK 3 R VALUE (WORKING SET) : 0.228 \ REMARK 3 FREE R VALUE : 0.297 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 \ REMARK 3 FREE R VALUE TEST SET COUNT : 130 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). \ REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE \ REMARK 3 1 35.3703 - 3.0002 0.97 2798 130 0.2284 0.2970 \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELLING. \ REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL \ REMARK 3 SOLVENT RADIUS : 1.11 \ REMARK 3 SHRINKAGE RADIUS : 0.90 \ REMARK 3 K_SOL : 0.30 \ REMARK 3 B_SOL : 21.69 \ REMARK 3 \ REMARK 3 ERROR ESTIMATES. \ REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 \ REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.470 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : 30.95 \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.88 \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : -0.97710 \ REMARK 3 B22 (A**2) : 2.41330 \ REMARK 3 B33 (A**2) : -1.43610 \ REMARK 3 B12 (A**2) : 0.00000 \ REMARK 3 B13 (A**2) : 3.54800 \ REMARK 3 B23 (A**2) : 0.00000 \ REMARK 3 \ REMARK 3 TWINNING INFORMATION. \ REMARK 3 FRACTION: NULL \ REMARK 3 OPERATOR: NULL \ REMARK 3 \ REMARK 3 DEVIATIONS FROM IDEAL VALUES. \ REMARK 3 RMSD COUNT \ REMARK 3 BOND : 0.019 907 \ REMARK 3 ANGLE : 0.842 1244 \ REMARK 3 CHIRALITY : 0.053 151 \ REMARK 3 PLANARITY : 0.003 161 \ REMARK 3 DIHEDRAL : 13.531 290 \ REMARK 3 \ REMARK 3 TLS DETAILS \ REMARK 3 NUMBER OF TLS GROUPS : NULL \ REMARK 3 \ REMARK 3 NCS DETAILS \ REMARK 3 NUMBER OF NCS GROUPS : NULL \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: NULL \ REMARK 4 \ REMARK 4 2YHN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAY-11. \ REMARK 100 THE DEPOSITION ID IS D_1290048190. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 06-NOV-09 \ REMARK 200 TEMPERATURE (KELVIN) : 100 \ REMARK 200 PH : 7.5 \ REMARK 200 NUMBER OF CRYSTALS USED : 1 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y \ REMARK 200 RADIATION SOURCE : ESRF \ REMARK 200 BEAMLINE : ID23-1 \ REMARK 200 X-RAY GENERATOR MODEL : NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 \ REMARK 200 MONOCHROMATOR : NULL \ REMARK 200 OPTICS : NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : CCD \ REMARK 200 DETECTOR MANUFACTURER : ADSC CCD \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM \ REMARK 200 DATA SCALING SOFTWARE : SCALA \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2928 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 \ REMARK 200 RESOLUTION RANGE LOW (A) : 39.190 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 \ REMARK 200 DATA REDUNDANCY : 3.900 \ REMARK 200 R MERGE (I) : 0.14000 \ REMARK 200 R SYM (I) : NULL \ REMARK 200 FOR THE DATA SET : 12.2000 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 \ REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 \ REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 \ REMARK 200 R MERGE FOR SHELL (I) : 0.34000 \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : 7.400 \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT \ REMARK 200 SOFTWARE USED: PHASER \ REMARK 200 STARTING MODEL: PDB ENTRY 3EB5 \ REMARK 200 \ REMARK 200 REMARK: NONE \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 39.00 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 7-8, 16-20% \ REMARK 280 MPD., PH 7.5 \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -X,Y,-Z \ REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 \ REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 19.81423 \ REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 11.38500 \ REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.19456 \ REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 19.81423 \ REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 11.38500 \ REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 39.19456 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 7500 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.5 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 GLY A 367 \ REMARK 465 ALA A 368 \ REMARK 465 GLN A 369 \ REMARK 465 GLN A 370 \ REMARK 465 THR A 371 \ REMARK 465 ARG A 372 \ REMARK 465 THR A 437 \ REMARK 465 SER A 438 \ REMARK 465 LEU A 439 \ REMARK 465 LEU A 440 \ REMARK 465 ASN A 441 \ REMARK 465 LEU A 442 \ REMARK 465 THR A 443 \ REMARK 465 VAL A 444 \ REMARK 465 ILE A 445 \ REMARK 465 GLY B 367 \ REMARK 465 ALA B 368 \ REMARK 465 GLN B 369 \ REMARK 465 GLN B 370 \ REMARK 465 THR B 371 \ REMARK 465 ARG B 372 \ REMARK 465 THR B 437 \ REMARK 465 SER B 438 \ REMARK 465 LEU B 439 \ REMARK 465 LEU B 440 \ REMARK 465 ASN B 441 \ REMARK 465 LEU B 442 \ REMARK 465 THR B 443 \ REMARK 465 VAL B 444 \ REMARK 465 ILE B 445 \ REMARK 470 \ REMARK 470 MISSING ATOM \ REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; \ REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; \ REMARK 470 I=INSERTION CODE): \ REMARK 470 M RES CSSEQI ATOMS \ REMARK 470 VAL A 373 CG1 CG2 \ REMARK 470 GLN A 375 CG CD OE1 NE2 \ REMARK 470 GLU A 376 CG CD OE1 OE2 \ REMARK 470 LYS A 377 CG CD CE NZ \ REMARK 470 LEU A 378 CG CD1 CD2 \ REMARK 470 ARG A 379 CG CD NE CZ NH1 NH2 \ REMARK 470 LYS A 380 CG CD CE NZ \ REMARK 470 LEU A 381 CG CD1 CD2 \ REMARK 470 LYS A 382 CG CD CE NZ \ REMARK 470 GLU A 383 CG CD OE1 OE2 \ REMARK 470 MET A 385 CG SD CE \ REMARK 470 MET A 388 CG SD CE \ REMARK 470 GLN A 416 CG CD OE1 NE2 \ REMARK 470 ARG A 424 CG CD NE CZ NH1 NH2 \ REMARK 470 GLU A 426 CG CD OE1 OE2 \ REMARK 470 GLN A 429 CG CD OE1 NE2 \ REMARK 470 HIS A 436 CG ND1 CD2 CE1 NE2 \ REMARK 470 VAL B 373 CG1 CG2 \ REMARK 470 LEU B 374 CG CD1 CD2 \ REMARK 470 GLN B 375 CG CD OE1 NE2 \ REMARK 470 GLU B 376 CG CD OE1 OE2 \ REMARK 470 LYS B 377 CG CD CE NZ \ REMARK 470 LEU B 378 CG CD1 CD2 \ REMARK 470 ARG B 379 CG CD NE CZ NH1 NH2 \ REMARK 470 LYS B 380 CG CD CE NZ \ REMARK 470 LEU B 381 CG CD1 CD2 \ REMARK 470 LYS B 382 CG CD CE NZ \ REMARK 470 GLU B 383 CG CD OE1 OE2 \ REMARK 470 LEU B 386 CG CD1 CD2 \ REMARK 470 MET B 388 CG SD CE \ REMARK 470 THR B 435 OG1 CG2 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE \ REMARK 500 O VAL A 431 O GLY B 403 2.18 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: TORSION ANGLES \ REMARK 500 \ REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) \ REMARK 500 \ REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- \ REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 \ REMARK 500 \ REMARK 500 M RES CSSEQI PSI PHI \ REMARK 500 LYS A 377 -75.28 -55.50 \ REMARK 500 GLU A 392 -60.15 -98.93 \ REMARK 500 CYS A 402 -70.54 -27.76 \ REMARK 500 TYR A 432 80.76 56.06 \ REMARK 500 PRO A 434 14.18 -69.90 \ REMARK 500 VAL B 389 -59.87 -134.94 \ REMARK 500 ASN B 396 15.18 -157.51 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 620 \ REMARK 620 METAL COORDINATION \ REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 ZN A1001 ZN \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 CYS A 387 SG \ REMARK 620 2 CYS A 390 SG 108.6 \ REMARK 620 3 CYS A 408 SG 109.2 110.0 \ REMARK 620 4 CYS A 411 SG 109.2 109.5 110.3 \ REMARK 620 N 1 2 3 \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 ZN A1002 ZN \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 CYS A 402 SG \ REMARK 620 2 HIS A 404 ND1 107.6 \ REMARK 620 3 CYS A 418 SG 109.2 112.9 \ REMARK 620 4 CYS A 421 SG 107.4 109.4 110.2 \ REMARK 620 N 1 2 3 \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 ZN B1001 ZN \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 CYS B 387 SG \ REMARK 620 2 CYS B 390 SG 104.8 \ REMARK 620 3 CYS B 408 SG 111.2 112.2 \ REMARK 620 4 CYS B 411 SG 110.2 107.1 111.2 \ REMARK 620 N 1 2 3 \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 ZN B1002 ZN \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 CYS B 402 SG \ REMARK 620 2 HIS B 404 ND1 108.9 \ REMARK 620 3 CYS B 418 SG 110.8 107.6 \ REMARK 620 4 CYS B 421 SG 108.4 112.1 109.2 \ REMARK 620 N 1 2 3 \ REMARK 800 \ REMARK 800 SITE \ REMARK 800 SITE_IDENTIFIER: AC1 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC2 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC3 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1001 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC4 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1002 \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: 2YHO RELATED DB: PDB \ REMARK 900 THE IDOL-UBE2D COMPLEX MEDIATES STEROL-DEPENDENT DEGRADATION OF THE \ REMARK 900 LDL RECEPTOR \ DBREF 2YHN A 369 445 UNP Q8WY64 MYLIP_HUMAN 369 445 \ DBREF 2YHN B 369 445 UNP Q8WY64 MYLIP_HUMAN 369 445 \ SEQADV 2YHN GLY A 367 UNP Q8WY64 EXPRESSION TAG \ SEQADV 2YHN ALA A 368 UNP Q8WY64 EXPRESSION TAG \ SEQADV 2YHN GLY B 367 UNP Q8WY64 EXPRESSION TAG \ SEQADV 2YHN ALA B 368 UNP Q8WY64 EXPRESSION TAG \ SEQRES 1 A 79 GLY ALA GLN GLN THR ARG VAL LEU GLN GLU LYS LEU ARG \ SEQRES 2 A 79 LYS LEU LYS GLU ALA MET LEU CYS MET VAL CYS CYS GLU \ SEQRES 3 A 79 GLU GLU ILE ASN SER THR PHE CYS PRO CYS GLY HIS THR \ SEQRES 4 A 79 VAL CYS CYS GLU SER CYS ALA ALA GLN LEU GLN SER CYS \ SEQRES 5 A 79 PRO VAL CYS ARG SER ARG VAL GLU HIS VAL GLN HIS VAL \ SEQRES 6 A 79 TYR LEU PRO THR HIS THR SER LEU LEU ASN LEU THR VAL \ SEQRES 7 A 79 ILE \ SEQRES 1 B 79 GLY ALA GLN GLN THR ARG VAL LEU GLN GLU LYS LEU ARG \ SEQRES 2 B 79 LYS LEU LYS GLU ALA MET LEU CYS MET VAL CYS CYS GLU \ SEQRES 3 B 79 GLU GLU ILE ASN SER THR PHE CYS PRO CYS GLY HIS THR \ SEQRES 4 B 79 VAL CYS CYS GLU SER CYS ALA ALA GLN LEU GLN SER CYS \ SEQRES 5 B 79 PRO VAL CYS ARG SER ARG VAL GLU HIS VAL GLN HIS VAL \ SEQRES 6 B 79 TYR LEU PRO THR HIS THR SER LEU LEU ASN LEU THR VAL \ SEQRES 7 B 79 ILE \ HET ZN A1001 1 \ HET ZN A1002 1 \ HET ZN B1001 1 \ HET ZN B1002 1 \ HETNAM ZN ZINC ION \ FORMUL 3 ZN 4(ZN 2+) \ HELIX 1 1 LEU A 374 ALA A 384 1 11 \ HELIX 2 2 CYS A 408 ALA A 413 1 6 \ HELIX 3 3 LEU B 374 MET B 385 1 12 \ HELIX 4 4 CYS B 408 LEU B 415 1 8 \ SHEET 1 AA 2 SER A 397 CYS A 400 0 \ SHEET 2 AA 2 HIS A 427 HIS A 430 -1 O HIS A 427 N CYS A 400 \ SHEET 1 BA 2 SER B 397 CYS B 400 0 \ SHEET 2 BA 2 HIS B 427 HIS B 430 -1 O HIS B 427 N CYS B 400 \ LINK SG CYS A 387 ZN ZN A1001 1555 1555 2.27 \ LINK SG CYS A 390 ZN ZN A1001 1555 1555 2.23 \ LINK SG CYS A 402 ZN ZN A1002 1555 1555 1.88 \ LINK ND1 HIS A 404 ZN ZN A1002 1555 1555 2.01 \ LINK SG CYS A 408 ZN ZN A1001 1555 1555 2.30 \ LINK SG CYS A 411 ZN ZN A1001 1555 1555 2.29 \ LINK SG CYS A 418 ZN ZN A1002 1555 1555 2.23 \ LINK SG CYS A 421 ZN ZN A1002 1555 1555 2.07 \ LINK SG CYS B 387 ZN ZN B1001 1555 1555 2.27 \ LINK SG CYS B 390 ZN ZN B1001 1555 1555 2.23 \ LINK SG CYS B 402 ZN ZN B1002 1555 1555 2.26 \ LINK ND1 HIS B 404 ZN ZN B1002 1555 1555 2.04 \ LINK SG CYS B 408 ZN ZN B1001 1555 1555 2.30 \ LINK SG CYS B 411 ZN ZN B1001 1555 1555 2.26 \ LINK SG CYS B 418 ZN ZN B1002 1555 1555 2.14 \ LINK SG CYS B 421 ZN ZN B1002 1555 1555 2.22 \ CISPEP 1 CYS A 400 PRO A 401 0 2.98 \ CISPEP 2 CYS B 400 PRO B 401 0 3.41 \ SITE 1 AC1 4 CYS A 387 CYS A 390 CYS A 408 CYS A 411 \ SITE 1 AC2 4 CYS A 402 HIS A 404 CYS A 418 CYS A 421 \ SITE 1 AC3 5 CYS B 387 CYS B 390 GLU B 393 CYS B 408 \ SITE 2 AC3 5 CYS B 411 \ SITE 1 AC4 4 CYS B 402 HIS B 404 CYS B 418 CYS B 421 \ CRYST1 79.260 22.770 87.838 90.00 116.82 90.00 I 1 2 1 8 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.012617 0.000000 0.006379 0.00000 \ SCALE2 0.000000 0.043917 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.012757 0.00000 \ ATOM 1 N VAL A 373 49.053 -2.552 3.755 1.00 23.76 N \ ATOM 2 CA VAL A 373 48.732 -1.142 3.946 1.00 44.93 C \ ATOM 3 C VAL A 373 47.621 -0.974 4.974 1.00 57.18 C \ ATOM 4 O VAL A 373 46.856 -1.904 5.240 1.00 32.85 O \ ATOM 5 CB VAL A 373 48.310 -0.461 2.628 1.00 21.35 C \ ATOM 6 N LEU A 374 47.542 0.222 5.551 1.00 74.72 N \ ATOM 7 CA LEU A 374 46.553 0.528 6.580 1.00 58.52 C \ ATOM 8 C LEU A 374 45.615 1.645 6.130 1.00 58.44 C \ ATOM 9 O LEU A 374 44.840 2.177 6.924 1.00 58.52 O \ ATOM 10 CB LEU A 374 47.244 0.918 7.891 1.00 38.18 C \ ATOM 11 CG LEU A 374 47.654 -0.176 8.886 1.00 28.32 C \ ATOM 12 CD1 LEU A 374 47.823 -1.540 8.225 1.00 11.20 C \ ATOM 13 CD2 LEU A 374 48.922 0.231 9.639 1.00 10.97 C \ ATOM 14 N GLN A 375 45.694 2.002 4.854 1.00 66.33 N \ ATOM 15 CA GLN A 375 44.791 2.994 4.291 1.00 54.47 C \ ATOM 16 C GLN A 375 43.410 2.381 4.129 1.00 48.80 C \ ATOM 17 O GLN A 375 42.407 2.983 4.505 1.00 50.37 O \ ATOM 18 CB GLN A 375 45.307 3.485 2.938 1.00 79.35 C \ ATOM 19 N GLU A 376 43.368 1.178 3.567 1.00 45.13 N \ ATOM 20 CA GLU A 376 42.108 0.469 3.385 1.00 67.64 C \ ATOM 21 C GLU A 376 41.362 0.357 4.712 1.00 65.39 C \ ATOM 22 O GLU A 376 40.145 0.544 4.771 1.00 58.46 O \ ATOM 23 CB GLU A 376 42.356 -0.920 2.792 1.00 69.71 C \ ATOM 24 N LYS A 377 42.104 0.058 5.774 1.00 46.62 N \ ATOM 25 CA LYS A 377 41.528 -0.064 7.108 1.00 33.27 C \ ATOM 26 C LYS A 377 40.772 1.202 7.505 1.00 39.52 C \ ATOM 27 O LYS A 377 39.540 1.226 7.498 1.00 43.05 O \ ATOM 28 CB LYS A 377 42.617 -0.374 8.136 1.00 33.86 C \ ATOM 29 N LEU A 378 41.516 2.249 7.848 1.00 29.63 N \ ATOM 30 CA LEU A 378 40.917 3.524 8.224 1.00 29.59 C \ ATOM 31 C LEU A 378 39.782 3.876 7.275 1.00 32.01 C \ ATOM 32 O LEU A 378 38.673 4.193 7.706 1.00 27.31 O \ ATOM 33 CB LEU A 378 41.965 4.637 8.214 1.00 36.01 C \ ATOM 34 N ARG A 379 40.064 3.814 5.979 1.00 27.69 N \ ATOM 35 CA ARG A 379 39.054 4.102 4.980 1.00 27.94 C \ ATOM 36 C ARG A 379 37.794 3.315 5.306 1.00 34.82 C \ ATOM 37 O ARG A 379 36.759 3.892 5.633 1.00 42.53 O \ ATOM 38 CB ARG A 379 39.563 3.755 3.579 1.00 30.70 C \ ATOM 39 N LYS A 380 37.894 1.993 5.236 1.00 27.48 N \ ATOM 40 CA LYS A 380 36.745 1.136 5.483 1.00 39.61 C \ ATOM 41 C LYS A 380 36.024 1.524 6.775 1.00 32.58 C \ ATOM 42 O LYS A 380 34.802 1.671 6.792 1.00 25.81 O \ ATOM 43 CB LYS A 380 37.167 -0.334 5.518 1.00 21.96 C \ ATOM 44 N LEU A 381 36.786 1.705 7.849 1.00 19.62 N \ ATOM 45 CA LEU A 381 36.207 2.045 9.144 1.00 20.20 C \ ATOM 46 C LEU A 381 35.466 3.374 9.099 1.00 27.22 C \ ATOM 47 O LEU A 381 34.299 3.458 9.481 1.00 25.18 O \ ATOM 48 CB LEU A 381 37.286 2.090 10.227 1.00 12.91 C \ ATOM 49 N LYS A 382 36.151 4.413 8.635 1.00 30.30 N \ ATOM 50 CA LYS A 382 35.550 5.737 8.539 1.00 16.84 C \ ATOM 51 C LYS A 382 34.357 5.707 7.595 1.00 19.11 C \ ATOM 52 O LYS A 382 33.398 6.456 7.770 1.00 22.49 O \ ATOM 53 CB LYS A 382 36.579 6.767 8.068 1.00 11.21 C \ ATOM 54 N GLU A 383 34.421 4.836 6.594 1.00 14.19 N \ ATOM 55 CA GLU A 383 33.321 4.692 5.654 1.00 15.29 C \ ATOM 56 C GLU A 383 32.147 4.005 6.343 1.00 23.26 C \ ATOM 57 O GLU A 383 30.989 4.239 6.000 1.00 45.90 O \ ATOM 58 CB GLU A 383 33.765 3.897 4.426 1.00 29.01 C \ ATOM 59 N ALA A 384 32.459 3.162 7.324 1.00 15.95 N \ ATOM 60 CA ALA A 384 31.442 2.492 8.127 1.00 14.36 C \ ATOM 61 C ALA A 384 30.807 3.467 9.112 1.00 23.56 C \ ATOM 62 O ALA A 384 29.906 3.104 9.870 1.00 41.18 O \ ATOM 63 CB ALA A 384 32.047 1.313 8.872 1.00 20.61 C \ ATOM 64 N MET A 385 31.290 4.703 9.104 1.00 19.40 N \ ATOM 65 CA MET A 385 30.768 5.733 9.990 1.00 15.93 C \ ATOM 66 C MET A 385 30.017 6.805 9.204 1.00 18.78 C \ ATOM 67 O MET A 385 29.668 7.852 9.746 1.00 17.75 O \ ATOM 68 CB MET A 385 31.897 6.360 10.810 1.00 13.84 C \ ATOM 69 N LEU A 386 29.769 6.530 7.927 1.00 24.05 N \ ATOM 70 CA LEU A 386 29.029 7.445 7.065 1.00 16.33 C \ ATOM 71 C LEU A 386 27.595 6.981 6.843 1.00 17.38 C \ ATOM 72 O LEU A 386 27.325 5.783 6.767 1.00 25.11 O \ ATOM 73 CB LEU A 386 29.723 7.578 5.709 1.00 13.14 C \ ATOM 74 CG LEU A 386 30.763 8.682 5.526 1.00 15.93 C \ ATOM 75 CD1 LEU A 386 31.161 8.765 4.065 1.00 17.03 C \ ATOM 76 CD2 LEU A 386 30.228 10.022 6.003 1.00 16.27 C \ ATOM 77 N CYS A 387 26.682 7.939 6.724 1.00 18.66 N \ ATOM 78 CA CYS A 387 25.288 7.635 6.436 1.00 18.77 C \ ATOM 79 C CYS A 387 25.184 6.743 5.207 1.00 15.09 C \ ATOM 80 O CYS A 387 25.911 6.929 4.235 1.00 13.63 O \ ATOM 81 CB CYS A 387 24.495 8.920 6.216 1.00 14.36 C \ ATOM 82 SG CYS A 387 22.729 8.649 6.037 1.00 16.32 S \ ATOM 83 N MET A 388 24.272 5.779 5.256 1.00 15.11 N \ ATOM 84 CA MET A 388 24.153 4.792 4.192 1.00 14.94 C \ ATOM 85 C MET A 388 23.349 5.302 3.000 1.00 15.19 C \ ATOM 86 O MET A 388 23.373 4.695 1.932 1.00 34.71 O \ ATOM 87 CB MET A 388 23.533 3.495 4.727 1.00 14.16 C \ ATOM 88 N VAL A 389 22.643 6.416 3.175 1.00 19.43 N \ ATOM 89 CA VAL A 389 21.794 6.947 2.109 1.00 27.17 C \ ATOM 90 C VAL A 389 22.304 8.261 1.516 1.00 27.92 C \ ATOM 91 O VAL A 389 22.551 8.345 0.314 1.00 31.61 O \ ATOM 92 CB VAL A 389 20.336 7.112 2.571 1.00 7.03 C \ ATOM 93 CG1 VAL A 389 19.633 5.767 2.587 1.00 8.25 C \ ATOM 94 CG2 VAL A 389 20.296 7.737 3.933 1.00 13.09 C \ ATOM 95 N CYS A 390 22.457 9.289 2.344 1.00 18.22 N \ ATOM 96 CA CYS A 390 22.979 10.550 1.838 1.00 18.37 C \ ATOM 97 C CYS A 390 24.489 10.447 1.642 1.00 24.96 C \ ATOM 98 O CYS A 390 25.073 11.190 0.856 1.00 40.84 O \ ATOM 99 CB CYS A 390 22.603 11.732 2.745 1.00 12.31 C \ ATOM 100 SG CYS A 390 23.443 11.814 4.348 1.00 29.11 S \ ATOM 101 N CYS A 391 25.110 9.508 2.351 1.00 23.91 N \ ATOM 102 CA CYS A 391 26.547 9.259 2.226 1.00 21.75 C \ ATOM 103 C CYS A 391 27.414 10.463 2.607 1.00 30.06 C \ ATOM 104 O CYS A 391 28.639 10.413 2.502 1.00 33.44 O \ ATOM 105 CB CYS A 391 26.890 8.799 0.806 1.00 24.83 C \ ATOM 106 SG CYS A 391 26.134 7.231 0.295 1.00 59.02 S \ ATOM 107 N GLU A 392 26.778 11.542 3.050 1.00 29.09 N \ ATOM 108 CA GLU A 392 27.506 12.747 3.434 1.00 36.05 C \ ATOM 109 C GLU A 392 27.709 12.851 4.944 1.00 50.93 C \ ATOM 110 O GLU A 392 28.844 12.904 5.419 1.00 54.12 O \ ATOM 111 CB GLU A 392 26.787 13.993 2.920 1.00 38.99 C \ ATOM 112 CG GLU A 392 26.649 14.058 1.410 1.00 63.16 C \ ATOM 113 CD GLU A 392 25.921 15.307 0.945 1.00 74.47 C \ ATOM 114 OE1 GLU A 392 25.508 16.109 1.809 1.00 95.27 O \ ATOM 115 OE2 GLU A 392 25.761 15.488 -0.281 1.00 75.82 O \ ATOM 116 N GLU A 393 26.609 12.891 5.693 1.00 30.28 N \ ATOM 117 CA GLU A 393 26.675 13.021 7.147 1.00 26.21 C \ ATOM 118 C GLU A 393 27.009 11.689 7.814 1.00 12.12 C \ ATOM 119 O GLU A 393 26.856 10.632 7.210 1.00 15.34 O \ ATOM 120 CB GLU A 393 25.357 13.561 7.702 1.00 26.85 C \ ATOM 121 CG GLU A 393 24.878 14.835 7.035 1.00 23.68 C \ ATOM 122 CD GLU A 393 23.545 15.304 7.585 1.00 28.18 C \ ATOM 123 OE1 GLU A 393 23.441 15.481 8.818 1.00 9.36 O \ ATOM 124 OE2 GLU A 393 22.602 15.486 6.784 1.00 24.83 O \ ATOM 125 N GLU A 394 27.456 11.746 9.064 1.00 7.67 N \ ATOM 126 CA GLU A 394 27.858 10.545 9.784 1.00 10.80 C \ ATOM 127 C GLU A 394 26.672 9.855 10.419 1.00 13.36 C \ ATOM 128 O GLU A 394 25.693 10.499 10.782 1.00 17.12 O \ ATOM 129 CB GLU A 394 28.867 10.875 10.879 1.00 7.29 C \ ATOM 130 CG GLU A 394 28.237 11.410 12.144 1.00 15.17 C \ ATOM 131 CD GLU A 394 29.100 11.177 13.368 1.00 52.30 C \ ATOM 132 OE1 GLU A 394 30.010 10.324 13.295 1.00 43.85 O \ ATOM 133 OE2 GLU A 394 28.865 11.839 14.403 1.00 44.49 O \ ATOM 134 N ILE A 395 26.781 8.540 10.565 1.00 17.01 N \ ATOM 135 CA ILE A 395 25.745 7.739 11.200 1.00 15.86 C \ ATOM 136 C ILE A 395 25.604 8.128 12.664 1.00 14.62 C \ ATOM 137 O ILE A 395 26.574 8.075 13.417 1.00 32.41 O \ ATOM 138 CB ILE A 395 26.086 6.246 11.121 1.00 18.74 C \ ATOM 139 CG1 ILE A 395 26.323 5.832 9.668 1.00 19.51 C \ ATOM 140 CG2 ILE A 395 24.985 5.420 11.755 1.00 25.92 C \ ATOM 141 CD1 ILE A 395 26.844 4.418 9.512 1.00 20.03 C \ ATOM 142 N ASN A 396 24.402 8.523 13.072 1.00 14.80 N \ ATOM 143 CA ASN A 396 24.201 8.976 14.446 1.00 15.01 C \ ATOM 144 C ASN A 396 22.843 8.638 15.041 1.00 17.80 C \ ATOM 145 O ASN A 396 22.499 9.130 16.115 1.00 20.69 O \ ATOM 146 CB ASN A 396 24.452 10.482 14.570 1.00 11.19 C \ ATOM 147 CG ASN A 396 23.367 11.315 13.910 1.00 19.10 C \ ATOM 148 OD1 ASN A 396 22.318 10.801 13.523 1.00 20.19 O \ ATOM 149 ND2 ASN A 396 23.617 12.613 13.782 1.00 17.15 N \ ATOM 150 N SER A 397 22.067 7.812 14.349 1.00 6.76 N \ ATOM 151 CA SER A 397 20.769 7.412 14.880 1.00 13.66 C \ ATOM 152 C SER A 397 20.365 6.015 14.440 1.00 17.40 C \ ATOM 153 O SER A 397 20.785 5.539 13.385 1.00 20.72 O \ ATOM 154 CB SER A 397 19.687 8.440 14.526 1.00 13.87 C \ ATOM 155 OG SER A 397 19.808 8.868 13.181 1.00 17.83 O \ ATOM 156 N THR A 398 19.546 5.366 15.261 1.00 12.74 N \ ATOM 157 CA THR A 398 19.153 3.987 15.010 1.00 12.99 C \ ATOM 158 C THR A 398 17.648 3.840 14.858 1.00 9.34 C \ ATOM 159 O THR A 398 16.885 4.735 15.220 1.00 8.39 O \ ATOM 160 CB THR A 398 19.631 3.054 16.133 1.00 9.09 C \ ATOM 161 OG1 THR A 398 18.542 2.233 16.573 1.00 9.51 O \ ATOM 162 CG2 THR A 398 20.164 3.860 17.307 1.00 9.29 C \ ATOM 163 N PHE A 399 17.230 2.702 14.314 1.00 8.42 N \ ATOM 164 CA PHE A 399 15.817 2.415 14.123 1.00 8.79 C \ ATOM 165 C PHE A 399 15.326 1.478 15.217 1.00 7.76 C \ ATOM 166 O PHE A 399 16.096 0.671 15.741 1.00 8.72 O \ ATOM 167 CB PHE A 399 15.578 1.794 12.743 1.00 8.82 C \ ATOM 168 CG PHE A 399 16.082 2.640 11.600 1.00 17.59 C \ ATOM 169 CD1 PHE A 399 15.645 3.948 11.437 1.00 18.97 C \ ATOM 170 CD2 PHE A 399 16.983 2.124 10.684 1.00 15.37 C \ ATOM 171 CE1 PHE A 399 16.107 4.732 10.382 1.00 8.68 C \ ATOM 172 CE2 PHE A 399 17.447 2.896 9.630 1.00 11.58 C \ ATOM 173 CZ PHE A 399 17.008 4.202 9.477 1.00 7.89 C \ ATOM 174 N CYS A 400 14.047 1.588 15.563 1.00 4.53 N \ ATOM 175 CA CYS A 400 13.471 0.751 16.607 1.00 5.87 C \ ATOM 176 C CYS A 400 12.151 0.130 16.173 1.00 5.76 C \ ATOM 177 O CYS A 400 11.318 0.803 15.569 1.00 7.45 O \ ATOM 178 CB CYS A 400 13.261 1.567 17.877 1.00 8.87 C \ ATOM 179 SG CYS A 400 14.749 2.371 18.471 1.00 17.27 S \ ATOM 180 N PRO A 401 11.942 -1.155 16.508 1.00 5.85 N \ ATOM 181 CA PRO A 401 12.851 -1.985 17.307 1.00 9.57 C \ ATOM 182 C PRO A 401 13.947 -2.580 16.438 1.00 8.01 C \ ATOM 183 O PRO A 401 14.817 -3.297 16.929 1.00 4.86 O \ ATOM 184 CB PRO A 401 11.936 -3.103 17.793 1.00 17.12 C \ ATOM 185 CG PRO A 401 10.989 -3.286 16.651 1.00 7.88 C \ ATOM 186 CD PRO A 401 10.727 -1.897 16.125 1.00 5.14 C \ ATOM 187 N CYS A 402 13.872 -2.286 15.144 1.00 17.86 N \ ATOM 188 CA CYS A 402 14.845 -2.724 14.146 1.00 6.24 C \ ATOM 189 C CYS A 402 16.244 -2.950 14.709 1.00 6.52 C \ ATOM 190 O CYS A 402 16.699 -4.085 14.796 1.00 9.01 O \ ATOM 191 CB CYS A 402 14.898 -1.695 13.020 1.00 13.97 C \ ATOM 192 SG CYS A 402 15.933 -2.137 11.657 1.00 14.85 S \ ATOM 193 N GLY A 403 16.930 -1.870 15.076 1.00 6.81 N \ ATOM 194 CA GLY A 403 18.262 -1.973 15.645 1.00 6.01 C \ ATOM 195 C GLY A 403 19.365 -1.404 14.768 1.00 16.88 C \ ATOM 196 O GLY A 403 20.341 -0.844 15.267 1.00 21.40 O \ ATOM 197 N HIS A 404 19.213 -1.547 13.455 1.00 15.77 N \ ATOM 198 CA HIS A 404 20.212 -1.071 12.499 1.00 11.19 C \ ATOM 199 C HIS A 404 20.533 0.412 12.659 1.00 12.30 C \ ATOM 200 O HIS A 404 19.655 1.268 12.544 1.00 13.40 O \ ATOM 201 CB HIS A 404 19.768 -1.359 11.060 1.00 14.73 C \ ATOM 202 CG HIS A 404 19.717 -2.816 10.726 1.00 32.91 C \ ATOM 203 ND1 HIS A 404 18.531 -3.496 10.520 1.00 22.04 N \ ATOM 204 CD2 HIS A 404 20.700 -3.734 10.570 1.00 20.17 C \ ATOM 205 CE1 HIS A 404 18.789 -4.758 10.253 1.00 21.77 C \ ATOM 206 NE2 HIS A 404 20.102 -4.933 10.276 1.00 16.34 N \ ATOM 207 N THR A 405 21.804 0.704 12.910 1.00 12.20 N \ ATOM 208 CA THR A 405 22.268 2.075 13.059 1.00 10.05 C \ ATOM 209 C THR A 405 23.081 2.485 11.834 1.00 8.28 C \ ATOM 210 O THR A 405 24.307 2.425 11.845 1.00 9.20 O \ ATOM 211 CB THR A 405 23.137 2.210 14.314 1.00 9.81 C \ ATOM 212 OG1 THR A 405 24.367 1.505 14.121 1.00 29.70 O \ ATOM 213 CG2 THR A 405 22.428 1.609 15.506 1.00 9.38 C \ ATOM 214 N VAL A 406 22.394 2.906 10.776 1.00 12.80 N \ ATOM 215 CA VAL A 406 23.047 3.126 9.486 1.00 7.68 C \ ATOM 216 C VAL A 406 22.702 4.463 8.827 1.00 12.83 C \ ATOM 217 O VAL A 406 23.021 4.678 7.657 1.00 17.63 O \ ATOM 218 CB VAL A 406 22.699 1.995 8.496 1.00 7.42 C \ ATOM 219 CG1 VAL A 406 23.116 0.651 9.059 1.00 8.54 C \ ATOM 220 CG2 VAL A 406 21.212 1.996 8.193 1.00 13.27 C \ ATOM 221 N CYS A 407 22.059 5.360 9.569 1.00 12.98 N \ ATOM 222 CA CYS A 407 21.672 6.655 9.013 1.00 10.75 C \ ATOM 223 C CYS A 407 22.045 7.841 9.897 1.00 8.79 C \ ATOM 224 O CYS A 407 22.445 7.677 11.048 1.00 10.07 O \ ATOM 225 CB CYS A 407 20.171 6.691 8.721 1.00 13.42 C \ ATOM 226 SG CYS A 407 19.684 6.000 7.121 1.00 17.07 S \ ATOM 227 N CYS A 408 21.908 9.037 9.334 1.00 8.67 N \ ATOM 228 CA CYS A 408 22.113 10.279 10.062 1.00 7.51 C \ ATOM 229 C CYS A 408 20.746 10.861 10.377 1.00 10.78 C \ ATOM 230 O CYS A 408 19.758 10.508 9.734 1.00 12.84 O \ ATOM 231 CB CYS A 408 22.902 11.268 9.211 1.00 10.31 C \ ATOM 232 SG CYS A 408 21.998 11.863 7.769 1.00 11.02 S \ ATOM 233 N GLU A 409 20.688 11.751 11.363 1.00 15.37 N \ ATOM 234 CA GLU A 409 19.416 12.318 11.808 1.00 12.74 C \ ATOM 235 C GLU A 409 18.508 12.699 10.649 1.00 13.01 C \ ATOM 236 O GLU A 409 17.332 12.343 10.637 1.00 19.10 O \ ATOM 237 CB GLU A 409 19.634 13.538 12.707 1.00 10.43 C \ ATOM 238 CG GLU A 409 21.083 13.982 12.838 1.00 14.90 C \ ATOM 239 CD GLU A 409 21.567 14.788 11.649 1.00 22.20 C \ ATOM 240 OE1 GLU A 409 20.742 15.109 10.768 1.00 22.59 O \ ATOM 241 OE2 GLU A 409 22.774 15.107 11.598 1.00 33.12 O \ ATOM 242 N SER A 410 19.056 13.415 9.673 1.00 18.28 N \ ATOM 243 CA SER A 410 18.245 13.960 8.587 1.00 17.82 C \ ATOM 244 C SER A 410 17.641 12.883 7.683 1.00 12.30 C \ ATOM 245 O SER A 410 16.549 13.059 7.144 1.00 24.56 O \ ATOM 246 CB SER A 410 19.041 14.985 7.769 1.00 15.15 C \ ATOM 247 OG SER A 410 20.426 14.926 8.068 1.00 18.18 O \ ATOM 248 N CYS A 411 18.346 11.768 7.527 1.00 10.60 N \ ATOM 249 CA CYS A 411 17.864 10.681 6.679 1.00 9.68 C \ ATOM 250 C CYS A 411 16.927 9.753 7.431 1.00 13.70 C \ ATOM 251 O CYS A 411 16.041 9.143 6.839 1.00 17.49 O \ ATOM 252 CB CYS A 411 19.031 9.887 6.102 1.00 9.52 C \ ATOM 253 SG CYS A 411 19.933 10.769 4.818 1.00 14.71 S \ ATOM 254 N ALA A 412 17.127 9.647 8.739 1.00 17.61 N \ ATOM 255 CA ALA A 412 16.280 8.805 9.571 1.00 8.61 C \ ATOM 256 C ALA A 412 14.876 9.398 9.705 1.00 9.17 C \ ATOM 257 O ALA A 412 13.885 8.671 9.757 1.00 16.44 O \ ATOM 258 CB ALA A 412 16.915 8.621 10.932 1.00 5.91 C \ ATOM 259 N ALA A 413 14.798 10.723 9.748 1.00 7.90 N \ ATOM 260 CA ALA A 413 13.518 11.412 9.876 1.00 10.16 C \ ATOM 261 C ALA A 413 12.694 11.320 8.596 1.00 25.62 C \ ATOM 262 O ALA A 413 11.485 11.550 8.607 1.00 37.38 O \ ATOM 263 CB ALA A 413 13.739 12.867 10.257 1.00 6.73 C \ ATOM 264 N GLN A 414 13.357 10.979 7.496 1.00 20.97 N \ ATOM 265 CA GLN A 414 12.714 10.927 6.189 1.00 8.22 C \ ATOM 266 C GLN A 414 12.193 9.533 5.865 1.00 10.52 C \ ATOM 267 O GLN A 414 11.261 9.381 5.077 1.00 13.61 O \ ATOM 268 CB GLN A 414 13.698 11.344 5.103 1.00 12.59 C \ ATOM 269 CG GLN A 414 13.191 12.430 4.185 1.00 32.20 C \ ATOM 270 CD GLN A 414 13.512 13.812 4.700 1.00 23.54 C \ ATOM 271 OE1 GLN A 414 14.436 13.992 5.494 1.00 10.96 O \ ATOM 272 NE2 GLN A 414 12.748 14.801 4.253 1.00 56.42 N \ ATOM 273 N LEU A 415 12.806 8.516 6.462 1.00 14.30 N \ ATOM 274 CA LEU A 415 12.461 7.129 6.163 1.00 17.81 C \ ATOM 275 C LEU A 415 11.331 6.609 7.044 1.00 21.25 C \ ATOM 276 O LEU A 415 11.219 6.984 8.210 1.00 21.23 O \ ATOM 277 CB LEU A 415 13.686 6.227 6.320 1.00 12.67 C \ ATOM 278 CG LEU A 415 14.897 6.549 5.445 1.00 17.49 C \ ATOM 279 CD1 LEU A 415 15.992 5.523 5.667 1.00 23.61 C \ ATOM 280 CD2 LEU A 415 14.503 6.602 3.980 1.00 25.22 C \ ATOM 281 N GLN A 416 10.501 5.738 6.478 1.00 26.03 N \ ATOM 282 CA GLN A 416 9.410 5.120 7.221 1.00 16.85 C \ ATOM 283 C GLN A 416 9.730 3.661 7.514 1.00 12.87 C \ ATOM 284 O GLN A 416 9.100 3.042 8.369 1.00 11.19 O \ ATOM 285 CB GLN A 416 8.098 5.225 6.442 1.00 17.12 C \ ATOM 286 N SER A 417 10.714 3.121 6.799 1.00 14.97 N \ ATOM 287 CA SER A 417 11.144 1.739 6.995 1.00 20.84 C \ ATOM 288 C SER A 417 12.661 1.585 6.839 1.00 14.44 C \ ATOM 289 O SER A 417 13.306 2.348 6.122 1.00 23.85 O \ ATOM 290 CB SER A 417 10.422 0.815 6.015 1.00 11.37 C \ ATOM 291 OG SER A 417 10.823 1.093 4.687 1.00 21.81 O \ ATOM 292 N CYS A 418 13.218 0.587 7.515 1.00 8.92 N \ ATOM 293 CA CYS A 418 14.658 0.361 7.539 1.00 9.49 C \ ATOM 294 C CYS A 418 15.217 -0.051 6.181 1.00 14.65 C \ ATOM 295 O CYS A 418 14.711 -0.978 5.553 1.00 21.64 O \ ATOM 296 CB CYS A 418 15.001 -0.711 8.571 1.00 10.62 C \ ATOM 297 SG CYS A 418 16.739 -1.171 8.548 1.00 8.50 S \ ATOM 298 N PRO A 419 16.274 0.636 5.725 1.00 12.43 N \ ATOM 299 CA PRO A 419 16.916 0.355 4.436 1.00 6.76 C \ ATOM 300 C PRO A 419 17.558 -1.026 4.390 1.00 10.39 C \ ATOM 301 O PRO A 419 17.641 -1.627 3.321 1.00 17.80 O \ ATOM 302 CB PRO A 419 18.006 1.424 4.350 1.00 3.02 C \ ATOM 303 CG PRO A 419 17.561 2.495 5.241 1.00 7.50 C \ ATOM 304 CD PRO A 419 16.851 1.824 6.369 1.00 12.29 C \ ATOM 305 N VAL A 420 18.016 -1.520 5.534 1.00 7.47 N \ ATOM 306 CA VAL A 420 18.707 -2.801 5.576 1.00 11.14 C \ ATOM 307 C VAL A 420 17.737 -3.983 5.597 1.00 11.52 C \ ATOM 308 O VAL A 420 17.787 -4.846 4.725 1.00 13.37 O \ ATOM 309 CB VAL A 420 19.644 -2.902 6.797 1.00 17.21 C \ ATOM 310 CG1 VAL A 420 20.535 -4.126 6.683 1.00 9.77 C \ ATOM 311 CG2 VAL A 420 20.482 -1.646 6.930 1.00 18.78 C \ ATOM 312 N CYS A 421 16.852 -4.017 6.587 1.00 6.98 N \ ATOM 313 CA CYS A 421 16.000 -5.184 6.789 1.00 9.02 C \ ATOM 314 C CYS A 421 14.553 -4.984 6.341 1.00 13.31 C \ ATOM 315 O CYS A 421 13.768 -5.929 6.350 1.00 25.67 O \ ATOM 316 CB CYS A 421 16.038 -5.623 8.254 1.00 12.68 C \ ATOM 317 SG CYS A 421 15.505 -4.361 9.413 1.00 14.81 S \ ATOM 318 N ARG A 422 14.202 -3.758 5.963 1.00 25.51 N \ ATOM 319 CA ARG A 422 12.865 -3.446 5.443 1.00 15.11 C \ ATOM 320 C ARG A 422 11.754 -3.588 6.477 1.00 11.23 C \ ATOM 321 O ARG A 422 10.716 -4.182 6.194 1.00 28.32 O \ ATOM 322 CB ARG A 422 12.535 -4.311 4.220 1.00 15.06 C \ ATOM 323 CG ARG A 422 13.340 -3.980 2.978 1.00 32.81 C \ ATOM 324 CD ARG A 422 12.907 -4.835 1.798 1.00 52.56 C \ ATOM 325 NE ARG A 422 13.242 -6.245 1.973 1.00 49.34 N \ ATOM 326 CZ ARG A 422 14.365 -6.808 1.537 1.00 59.65 C \ ATOM 327 NH1 ARG A 422 15.271 -6.079 0.901 1.00 53.03 N \ ATOM 328 NH2 ARG A 422 14.582 -8.102 1.737 1.00 42.09 N \ ATOM 329 N SER A 423 11.962 -3.046 7.669 1.00 9.41 N \ ATOM 330 CA SER A 423 10.924 -3.090 8.691 1.00 9.15 C \ ATOM 331 C SER A 423 10.527 -1.690 9.131 1.00 9.90 C \ ATOM 332 O SER A 423 11.380 -0.838 9.363 1.00 13.01 O \ ATOM 333 CB SER A 423 11.367 -3.934 9.894 1.00 12.49 C \ ATOM 334 OG SER A 423 12.637 -3.526 10.376 1.00 18.96 O \ ATOM 335 N ARG A 424 9.224 -1.458 9.232 1.00 14.82 N \ ATOM 336 CA ARG A 424 8.711 -0.153 9.620 1.00 11.26 C \ ATOM 337 C ARG A 424 9.435 0.382 10.850 1.00 12.83 C \ ATOM 338 O ARG A 424 9.521 -0.286 11.882 1.00 8.95 O \ ATOM 339 CB ARG A 424 7.202 -0.215 9.873 1.00 7.40 C \ ATOM 340 N VAL A 425 9.967 1.589 10.722 1.00 7.33 N \ ATOM 341 CA VAL A 425 10.616 2.264 11.829 1.00 5.94 C \ ATOM 342 C VAL A 425 9.545 2.791 12.772 1.00 9.30 C \ ATOM 343 O VAL A 425 8.746 3.647 12.394 1.00 8.89 O \ ATOM 344 CB VAL A 425 11.471 3.436 11.318 1.00 12.39 C \ ATOM 345 CG1 VAL A 425 12.105 4.185 12.473 1.00 8.27 C \ ATOM 346 CG2 VAL A 425 12.534 2.934 10.346 1.00 9.56 C \ ATOM 347 N GLU A 426 9.518 2.271 13.995 1.00 12.70 N \ ATOM 348 CA GLU A 426 8.537 2.710 14.983 1.00 6.42 C \ ATOM 349 C GLU A 426 9.028 3.948 15.731 1.00 4.92 C \ ATOM 350 O GLU A 426 8.232 4.779 16.160 1.00 17.91 O \ ATOM 351 CB GLU A 426 8.223 1.583 15.968 1.00 3.95 C \ ATOM 352 N HIS A 427 10.343 4.073 15.866 1.00 5.26 N \ ATOM 353 CA HIS A 427 10.944 5.173 16.611 1.00 5.59 C \ ATOM 354 C HIS A 427 12.421 5.288 16.250 1.00 5.38 C \ ATOM 355 O HIS A 427 13.074 4.289 15.958 1.00 11.33 O \ ATOM 356 CB HIS A 427 10.786 4.934 18.119 1.00 4.66 C \ ATOM 357 CG HIS A 427 11.428 5.982 18.973 1.00 5.26 C \ ATOM 358 ND1 HIS A 427 10.970 7.282 19.034 1.00 8.53 N \ ATOM 359 CD2 HIS A 427 12.489 5.920 19.814 1.00 5.19 C \ ATOM 360 CE1 HIS A 427 11.724 7.975 19.868 1.00 3.49 C \ ATOM 361 NE2 HIS A 427 12.651 7.174 20.355 1.00 4.81 N \ ATOM 362 N VAL A 428 12.946 6.507 16.261 1.00 3.37 N \ ATOM 363 CA VAL A 428 14.372 6.713 16.054 1.00 4.89 C \ ATOM 364 C VAL A 428 15.046 7.167 17.346 1.00 7.51 C \ ATOM 365 O VAL A 428 14.628 8.143 17.963 1.00 11.28 O \ ATOM 366 CB VAL A 428 14.647 7.752 14.954 1.00 3.86 C \ ATOM 367 CG1 VAL A 428 16.144 7.947 14.774 1.00 4.58 C \ ATOM 368 CG2 VAL A 428 14.003 7.322 13.653 1.00 6.60 C \ ATOM 369 N GLN A 429 16.089 6.451 17.749 1.00 5.56 N \ ATOM 370 CA GLN A 429 16.858 6.817 18.928 1.00 7.57 C \ ATOM 371 C GLN A 429 18.179 7.458 18.532 1.00 5.71 C \ ATOM 372 O GLN A 429 18.913 6.919 17.707 1.00 6.62 O \ ATOM 373 CB GLN A 429 17.119 5.583 19.796 1.00 14.91 C \ ATOM 374 N HIS A 430 18.477 8.616 19.112 1.00 11.74 N \ ATOM 375 CA HIS A 430 19.781 9.228 18.917 1.00 13.21 C \ ATOM 376 C HIS A 430 20.817 8.376 19.640 1.00 19.59 C \ ATOM 377 O HIS A 430 20.544 7.850 20.723 1.00 16.28 O \ ATOM 378 CB HIS A 430 19.801 10.660 19.440 1.00 5.36 C \ ATOM 379 CG HIS A 430 20.954 11.461 18.924 1.00 13.48 C \ ATOM 380 ND1 HIS A 430 21.146 11.699 17.581 1.00 15.33 N \ ATOM 381 CD2 HIS A 430 21.989 12.053 19.565 1.00 20.86 C \ ATOM 382 CE1 HIS A 430 22.244 12.416 17.415 1.00 18.38 C \ ATOM 383 NE2 HIS A 430 22.775 12.643 18.605 1.00 23.26 N \ ATOM 384 N VAL A 431 22.002 8.246 19.049 1.00 15.82 N \ ATOM 385 CA VAL A 431 22.908 7.162 19.421 1.00 13.03 C \ ATOM 386 C VAL A 431 24.018 7.471 20.442 1.00 12.24 C \ ATOM 387 O VAL A 431 24.202 6.711 21.389 1.00 28.08 O \ ATOM 388 CB VAL A 431 23.524 6.510 18.171 1.00 15.08 C \ ATOM 389 CG1 VAL A 431 24.598 7.410 17.577 1.00 16.17 C \ ATOM 390 CG2 VAL A 431 24.079 5.145 18.517 1.00 13.16 C \ ATOM 391 N TYR A 432 24.761 8.557 20.250 1.00 8.16 N \ ATOM 392 CA TYR A 432 25.917 8.867 21.106 1.00 14.10 C \ ATOM 393 C TYR A 432 26.953 7.739 21.155 1.00 20.72 C \ ATOM 394 O TYR A 432 26.999 6.955 22.106 1.00 15.21 O \ ATOM 395 CB TYR A 432 25.478 9.256 22.523 1.00 6.06 C \ ATOM 396 CG TYR A 432 24.709 10.550 22.580 1.00 11.38 C \ ATOM 397 CD1 TYR A 432 25.176 11.686 21.932 1.00 17.08 C \ ATOM 398 CD2 TYR A 432 23.503 10.635 23.261 1.00 13.79 C \ ATOM 399 CE1 TYR A 432 24.472 12.872 21.973 1.00 15.94 C \ ATOM 400 CE2 TYR A 432 22.790 11.815 23.305 1.00 14.26 C \ ATOM 401 CZ TYR A 432 23.280 12.930 22.658 1.00 14.90 C \ ATOM 402 OH TYR A 432 22.579 14.109 22.697 1.00 26.11 O \ ATOM 403 N LEU A 433 27.794 7.684 20.126 1.00 24.70 N \ ATOM 404 CA LEU A 433 28.833 6.665 20.015 1.00 22.32 C \ ATOM 405 C LEU A 433 30.183 7.163 20.514 1.00 35.46 C \ ATOM 406 O LEU A 433 30.553 8.313 20.277 1.00 28.35 O \ ATOM 407 CB LEU A 433 28.966 6.211 18.566 1.00 18.93 C \ ATOM 408 CG LEU A 433 27.702 5.556 18.024 1.00 15.87 C \ ATOM 409 CD1 LEU A 433 27.844 5.262 16.544 1.00 26.68 C \ ATOM 410 CD2 LEU A 433 27.403 4.291 18.813 1.00 20.87 C \ ATOM 411 N PRO A 434 30.931 6.284 21.200 1.00 35.13 N \ ATOM 412 CA PRO A 434 32.245 6.605 21.765 1.00 36.08 C \ ATOM 413 C PRO A 434 33.310 6.797 20.686 1.00 41.31 C \ ATOM 414 O PRO A 434 34.501 6.814 20.994 1.00 51.18 O \ ATOM 415 CB PRO A 434 32.573 5.368 22.614 1.00 25.95 C \ ATOM 416 CG PRO A 434 31.281 4.622 22.757 1.00 18.60 C \ ATOM 417 CD PRO A 434 30.531 4.903 21.505 1.00 28.01 C \ ATOM 418 N THR A 435 32.881 6.943 19.436 1.00 36.52 N \ ATOM 419 CA THR A 435 33.810 7.160 18.332 1.00 44.23 C \ ATOM 420 C THR A 435 33.550 8.495 17.624 1.00 33.09 C \ ATOM 421 O THR A 435 34.460 9.103 17.062 1.00 20.95 O \ ATOM 422 CB THR A 435 33.733 6.018 17.303 1.00 41.00 C \ ATOM 423 OG1 THR A 435 33.366 4.796 17.957 1.00 25.03 O \ ATOM 424 CG2 THR A 435 35.072 5.848 16.605 1.00 38.99 C \ ATOM 425 N HIS A 436 32.302 8.947 17.662 1.00 41.47 N \ ATOM 426 CA HIS A 436 31.911 10.178 16.984 1.00 52.35 C \ ATOM 427 C HIS A 436 32.289 11.425 17.778 1.00 43.12 C \ ATOM 428 O HIS A 436 31.569 12.424 17.750 1.00 14.15 O \ ATOM 429 CB HIS A 436 30.406 10.177 16.712 1.00 70.80 C \ TER 430 HIS A 436 \ TER 878 HIS B 436 \ HETATM 879 ZN ZN A1001 22.028 10.786 5.738 1.00 19.99 ZN \ HETATM 880 ZN ZN A1002 16.697 -2.796 10.070 1.00 8.11 ZN \ HETATM 881 ZN ZN B1001 30.133 -5.265 29.618 1.00 23.47 ZN \ HETATM 882 ZN ZN B1002 23.001 8.344 29.250 1.00 10.28 ZN \ CONECT 82 879 \ CONECT 100 879 \ CONECT 192 880 \ CONECT 203 880 \ CONECT 232 879 \ CONECT 253 879 \ CONECT 297 880 \ CONECT 317 880 \ CONECT 509 881 \ CONECT 527 881 \ CONECT 619 882 \ CONECT 630 882 \ CONECT 659 881 \ CONECT 680 881 \ CONECT 728 882 \ CONECT 748 882 \ CONECT 879 82 100 232 253 \ CONECT 880 192 203 297 317 \ CONECT 881 509 527 659 680 \ CONECT 882 619 630 728 748 \ MASTER 362 0 4 4 4 0 5 6 880 2 20 14 \ END \ \ ""","2yhnA1") cmd.hide("everything") cmd.color("grey70") rebuild cmd.select("rainbow","resi 416-420 + resi 421-425 + resi 427-431") cmd.spectrum(expression="count", selection="resi 416-420 + resi 421-425 + resi 427-431") cmd.show_as("cartoon") cmd.zoom("2yhnA1",animate=-1) cmd.delete("rainbow")