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set ribbon_radius = 0.5 set orthoscopic = 1 bg_color white set opaque_background, off set cartoon_fancy_sheets, 1 set cartoon_fancy_helices, 1 set cartoon_smooth_loops,1 set cartoon_rect_length, 1.2 set cartoon_rect_width, 0.3 set cartoon_dumbbell_length, 1.2 set cartoon_dumbbell_radius, 0.1 set cartoon_dumbbell_width, 0.1 cmd.read_pdbstr("""\ HEADER RIBOSOME 16-APR-09 3IY8 \ TITLE LEISHMANIA TARENTOLAE MITONCHONDRIAL RIBOSOME SMALL SUBUNIT \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: LEISHMANIA TARENTOLAE MITOCHONDRIAL SMALL SUBUNIT; \ COMPND 3 CHAIN: A; \ COMPND 4 MOL_ID: 2; \ COMPND 5 MOLECULE: 30S RIBOSOMAL PROTEIN S5; \ COMPND 6 CHAIN: E; \ COMPND 7 MOL_ID: 3; \ COMPND 8 MOLECULE: 30S RIBOSOMAL PROTEIN S6; \ COMPND 9 CHAIN: F; \ COMPND 10 MOL_ID: 4; \ COMPND 11 MOLECULE: 30S RIBOSOMAL PROTEIN S8; \ COMPND 12 CHAIN: H; \ COMPND 13 MOL_ID: 5; \ COMPND 14 MOLECULE: 30S RIBOSOMAL PROTEIN S9; \ COMPND 15 CHAIN: I; \ COMPND 16 MOL_ID: 6; \ COMPND 17 MOLECULE: 30S RIBOSOMAL PROTEIN S11; \ COMPND 18 CHAIN: K; \ COMPND 19 MOL_ID: 7; \ COMPND 20 MOLECULE: 30S RIBOSOMAL PROTEIN S12; \ COMPND 21 CHAIN: L; \ COMPND 22 MOL_ID: 8; \ COMPND 23 MOLECULE: 30S RIBOSOMAL PROTEIN S15; \ COMPND 24 CHAIN: O; \ COMPND 25 MOL_ID: 9; \ COMPND 26 MOLECULE: 30S RIBOSOMAL PROTEIN S16; \ COMPND 27 CHAIN: P; \ COMPND 28 MOL_ID: 10; \ COMPND 29 MOLECULE: 30S RIBOSOMAL PROTEIN S17; \ COMPND 30 CHAIN: Q; \ COMPND 31 MOL_ID: 11; \ COMPND 32 MOLECULE: 30S RIBOSOMAL PROTEIN S18; \ COMPND 33 CHAIN: R \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA TARENTOLAE; \ SOURCE 3 ORGANISM_TAXID: 5689; \ SOURCE 4 MOL_ID: 2; \ SOURCE 5 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; \ SOURCE 6 ORGANISM_TAXID: 83333; \ SOURCE 7 MOL_ID: 3; \ SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; \ SOURCE 9 ORGANISM_TAXID: 83333; \ SOURCE 10 MOL_ID: 4; \ SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; \ SOURCE 12 ORGANISM_TAXID: 83333; \ SOURCE 13 MOL_ID: 5; \ SOURCE 14 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; \ SOURCE 15 ORGANISM_TAXID: 83333; \ SOURCE 16 MOL_ID: 6; \ SOURCE 17 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; \ SOURCE 18 ORGANISM_TAXID: 83333; \ SOURCE 19 MOL_ID: 7; \ SOURCE 20 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; \ SOURCE 21 ORGANISM_TAXID: 83333; \ SOURCE 22 MOL_ID: 8; \ SOURCE 23 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; \ SOURCE 24 ORGANISM_TAXID: 83333; \ SOURCE 25 MOL_ID: 9; \ SOURCE 26 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; \ SOURCE 27 ORGANISM_TAXID: 83333; \ SOURCE 28 MOL_ID: 10; \ SOURCE 29 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; \ SOURCE 30 ORGANISM_TAXID: 83333; \ SOURCE 31 MOL_ID: 11; \ SOURCE 32 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; \ SOURCE 33 ORGANISM_TAXID: 83333 \ KEYWDS LEISHMANIA TARENTOLAE, MITOCHONDRIAL RIBOSOME, CRYOEM, MINIMAL RNA., \ KEYWDS 2 ANTIBIOTIC RESISTANCE, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA- \ KEYWDS 3 BINDING, RRNA-BINDING, REPRESSOR, TRANSLATION REGULATION, TRNA- \ KEYWDS 4 BINDING, METHYLATION, ENDONUCLEASE, HYDROLASE, NUCLEASE, RIBOSOME \ EXPDTA ELECTRON MICROSCOPY \ MDLTYP CA ATOMS ONLY, CHAIN E, F, H, I, K, L, O, P, Q, R; P ATOMS ONLY, CHAIN\ MDLTYP 2A \ AUTHOR M.R.SHARMA,T.M.BOOTH,L.SIMPSON,D.A.MASLOV,R.K.AGRAWAL \ REVDAT 2 18-JUL-18 3IY8 1 REMARK \ REVDAT 1 07-JUL-09 3IY8 0 \ JRNL AUTH M.R.SHARMA,T.M.BOOTH,L.SIMPSON,D.A.MASLOV,R.K.AGRAWAL \ JRNL TITL STRUCTURE OF A MITOCHONDRIAL RIBOSOME WITH MINIMAL RNA \ JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 9637 2009 \ JRNL REFN ISSN 0027-8424 \ JRNL PMID 19497863 \ JRNL DOI 10.1073/PNAS.0901631106 \ REMARK 2 \ REMARK 2 RESOLUTION. 14.10 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 SOFTWARE PACKAGES : SPIDER \ REMARK 3 RECONSTRUCTION SCHEMA : NULL \ REMARK 3 \ REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT \ REMARK 3 PDB ENTRY : NULL \ REMARK 3 REFINEMENT SPACE : REAL \ REMARK 3 REFINEMENT PROTOCOL : NULL \ REMARK 3 REFINEMENT TARGET : NULL \ REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL \ REMARK 3 \ REMARK 3 FITTING PROCEDURE : NULL \ REMARK 3 \ REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS \ REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL \ REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL \ REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 14.10 \ REMARK 3 NUMBER OF PARTICLES : 53475 \ REMARK 3 CTF CORRECTION METHOD : NULL \ REMARK 3 \ REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL \ REMARK 3 \ REMARK 3 OTHER DETAILS: NULL \ REMARK 4 \ REMARK 4 3IY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-09. \ REMARK 100 THE DEPOSITION ID IS D_1000160014. \ REMARK 245 \ REMARK 245 EXPERIMENTAL DETAILS \ REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE \ REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) \ REMARK 245 \ REMARK 245 ELECTRON MICROSCOPE SAMPLE \ REMARK 245 SAMPLE TYPE : PARTICLE \ REMARK 245 PARTICLE TYPE : POINT \ REMARK 245 NAME OF SAMPLE : LEISHMANIA MITOCHONDRIAL 50S \ REMARK 245 RIBOSOME \ REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.07 \ REMARK 245 SAMPLE SUPPORT DETAILS : NULL \ REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL \ REMARK 245 SAMPLE BUFFER : NULL \ REMARK 245 PH : 7.50 \ REMARK 245 SAMPLE DETAILS : MONOMER \ REMARK 245 \ REMARK 245 DATA ACQUISITION \ REMARK 245 DATE OF EXPERIMENT : NULL \ REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL \ REMARK 245 TEMPERATURE (KELVIN) : 80.00 \ REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 \ REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM \ REMARK 245 MINIMUM DEFOCUS (NM) : 1600.00 \ REMARK 245 MAXIMUM DEFOCUS (NM) : 4500.00 \ REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 \ REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 \ REMARK 245 NOMINAL CS : NULL \ REMARK 245 IMAGING MODE : BRIGHT FIELD \ REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : NULL \ REMARK 245 ILLUMINATION MODE : FLOOD BEAM \ REMARK 245 NOMINAL MAGNIFICATION : 50000 \ REMARK 245 CALIBRATED MAGNIFICATION : 50760 \ REMARK 245 SOURCE : FIELD EMISSION GUN \ REMARK 245 ACCELERATION VOLTAGE (KV) : 200 \ REMARK 245 IMAGING DETAILS : NULL \ REMARK 247 \ REMARK 247 ELECTRON MICROSCOPY \ REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON \ REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE \ REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES \ REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION \ REMARK 247 OF THE STRUCTURE FACTORS. \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: UNDECAMERIC \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F, H, I, K, L, O, P, Q, \ REMARK 350 AND CHAINS: R \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE \ REMARK 500 P U A 445 CA ALA H 34 0.45 \ REMARK 500 P U A 400 CA ARG R 44 0.58 \ REMARK 500 P C A 258 CA ARG L 109 0.64 \ REMARK 500 CA GLU H 123 CA LYS Q 33 0.94 \ REMARK 500 P U A 384 CA ILE F 51 0.96 \ REMARK 500 CA ILE H 125 CA TYR Q 31 1.23 \ REMARK 500 P G A 474 CA PRO K 105 1.37 \ REMARK 500 P C A 366 CA GLY H 16 1.42 \ REMARK 500 P U A 112 CA GLU Q 60 1.50 \ REMARK 500 P A A 432 CA VAL O 26 1.53 \ REMARK 500 CA ILE H 124 CA GLY Q 32 1.54 \ REMARK 500 CA TYR H 85 CA PHE Q 34 1.60 \ REMARK 500 P U A 388 CA GLU K 71 1.82 \ REMARK 500 P C A 620 CA THR K 18 1.97 \ REMARK 500 P A A 15 CA ASN E 123 2.00 \ REMARK 500 P A A 361 CA THR H 11 2.06 \ REMARK 500 P C A 622 CA ARG K 81 2.10 \ REMARK 500 P G A 242 CA GLY L 67 2.11 \ REMARK 500 P U A 389 CA THR K 99 2.12 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: EMD-5113 RELATED DB: EMDB \ REMARK 900 LEISHMANIA TARENTOLAE MITOCHONDRIAL RIBOSOME \ DBREF 3IY8 E 1 150 UNP P0A7W1 RS5_ECOLI 10 159 \ DBREF 3IY8 F 1 100 UNP P02358 RS6_ECOLI 1 100 \ DBREF 3IY8 H 1 129 UNP P0A7W7 RS8_ECOLI 2 130 \ DBREF 3IY8 I 1 127 UNP P0A7X3 RS9_ECOLI 4 130 \ DBREF 3IY8 K 1 117 UNP P0A7R9 RS11_ECOLI 13 129 \ DBREF 3IY8 L 1 123 UNP P0A7S3 RS12_ECOLI 2 124 \ DBREF 3IY8 O 1 88 UNP Q8X9M2 RS15_ECO57 2 89 \ DBREF 3IY8 P 1 82 UNP P0A7T3 RS16_ECOLI 1 82 \ DBREF 3IY8 Q 1 80 UNP P0AG63 RS17_ECOLI 4 83 \ DBREF 3IY8 R 1 55 UNP Q1R358 RS18_ECOUT 20 74 \ DBREF 3IY8 A 1 627 PDB 3IY8 3IY8 1 627 \ SEQRES 1 A 540 A U U A U A C G U A G U C \ SEQRES 2 A 540 A A U U G U U A U U A U U \ SEQRES 3 A 540 C A U A U U A A U U U U U \ SEQRES 4 A 540 U U A A A A G U U U U U U \ SEQRES 5 A 540 A A U U U U A U A U U A G \ SEQRES 6 A 540 U U U A U U U G U U U A C \ SEQRES 7 A 540 A A A U U U A A A U U A U \ SEQRES 8 A 540 A U U U C A U U A U U U A \ SEQRES 9 A 540 G G A A U A G U U A A U U \ SEQRES 10 A 540 A G A U U U A U U U G U U \ SEQRES 11 A 540 A A U G C U A U U A A A G \ SEQRES 12 A 540 G G G U G U G G A A A A A \ SEQRES 13 A 540 G U G U U A A A U U A U U \ SEQRES 14 A 540 U A U A U A U U U A A A U \ SEQRES 15 A 540 A A U A A A U A A A A U A \ SEQRES 16 A 540 U A A C U U A U U A G U C \ SEQRES 17 A 540 A G A A A U G G A U G C G \ SEQRES 18 A 540 A G C C G U U G C G G U A \ SEQRES 19 A 540 A U U U C U A U G C U U U \ SEQRES 20 A 540 U A A A U A U U A U A C A \ SEQRES 21 A 540 U U U A U U U U A U U A U \ SEQRES 22 A 540 A U A U G C A A A U A A A \ SEQRES 23 A 540 A A A U G A C A C A U U A \ SEQRES 24 A 540 A U U A U U A A U U A U A \ SEQRES 25 A 540 U U A U A U U A U A U U U \ SEQRES 26 A 540 A U U C A C A U A A G U C \ SEQRES 27 A 540 A A C A A U A U C U A U U \ SEQRES 28 A 540 U A C U G U U U U U G A C \ SEQRES 29 A 540 A A C A U G A U A A G G A \ SEQRES 30 A 540 U U A U A A A U G G A A U \ SEQRES 31 A 540 U A U A A U U U U A U A A \ SEQRES 32 A 540 U C A A A A C U A A U U U \ SEQRES 33 A 540 A U U A U A U U A A A U U \ SEQRES 34 A 540 A G C A U G U U U A G A U \ SEQRES 35 A 540 A A A A C A A U A A A U U \ SEQRES 36 A 540 U A G A A G G U A U U C U \ SEQRES 37 A 540 U G C C C A C C A U U C U \ SEQRES 38 A 540 U U G U A A U A A A G A C \ SEQRES 39 A 540 A A C G U G C A G U A A U \ SEQRES 40 A 540 U A A U A U A U U U A U A \ SEQRES 41 A 540 A A A A U A U A U U U U C \ SEQRES 42 A 540 U C A U G U U \ SEQRES 1 E 150 GLU LEU GLN GLU LYS LEU ILE ALA VAL ASN ARG VAL SER \ SEQRES 2 E 150 LYS THR VAL LYS GLY GLY ARG ILE PHE SER PHE THR ALA \ SEQRES 3 E 150 LEU THR VAL VAL GLY ASP GLY ASN GLY ARG VAL GLY PHE \ SEQRES 4 E 150 GLY TYR GLY LYS ALA ARG GLU VAL PRO ALA ALA ILE GLN \ SEQRES 5 E 150 LYS ALA MET GLU LYS ALA ARG ARG ASN MET ILE ASN VAL \ SEQRES 6 E 150 ALA LEU ASN ASN GLY THR LEU GLN HIS PRO VAL LYS GLY \ SEQRES 7 E 150 VAL HIS THR GLY SER ARG VAL PHE MET GLN PRO ALA SER \ SEQRES 8 E 150 GLU GLY THR GLY ILE ILE ALA GLY GLY ALA MET ARG ALA \ SEQRES 9 E 150 VAL LEU GLU VAL ALA GLY VAL HIS ASN VAL LEU ALA LYS \ SEQRES 10 E 150 ALA TYR GLY SER THR ASN PRO ILE ASN VAL VAL ARG ALA \ SEQRES 11 E 150 THR ILE ASP GLY LEU GLU ASN MET ASN SER PRO GLU MET \ SEQRES 12 E 150 VAL ALA ALA LYS ARG GLY LYS \ SEQRES 1 F 100 MET ARG HIS TYR GLU ILE VAL PHE MET VAL HIS PRO ASP \ SEQRES 2 F 100 GLN SER GLU GLN VAL PRO GLY MET ILE GLU ARG TYR THR \ SEQRES 3 F 100 ALA ALA ILE THR GLY ALA GLU GLY LYS ILE HIS ARG LEU \ SEQRES 4 F 100 GLU ASP TRP GLY ARG ARG GLN LEU ALA TYR PRO ILE ASN \ SEQRES 5 F 100 LYS LEU HIS LYS ALA HIS TYR VAL LEU MET ASN VAL GLU \ SEQRES 6 F 100 ALA PRO GLN GLU VAL ILE ASP GLU LEU GLU THR THR PHE \ SEQRES 7 F 100 ARG PHE ASN ASP ALA VAL ILE ARG SER MET VAL MET ARG \ SEQRES 8 F 100 THR LYS HIS ALA VAL THR GLU ALA SER \ SEQRES 1 H 129 SER MET GLN ASP PRO ILE ALA ASP MET LEU THR ARG ILE \ SEQRES 2 H 129 ARG ASN GLY GLN ALA ALA ASN LYS ALA ALA VAL THR MET \ SEQRES 3 H 129 PRO SER SER LYS LEU LYS VAL ALA ILE ALA ASN VAL LEU \ SEQRES 4 H 129 LYS GLU GLU GLY PHE ILE GLU ASP PHE LYS VAL GLU GLY \ SEQRES 5 H 129 ASP THR LYS PRO GLU LEU GLU LEU THR LEU LYS TYR PHE \ SEQRES 6 H 129 GLN GLY LYS ALA VAL VAL GLU SER ILE GLN ARG VAL SER \ SEQRES 7 H 129 ARG PRO GLY LEU ARG ILE TYR LYS ARG LYS ASP GLU LEU \ SEQRES 8 H 129 PRO LYS VAL MET ALA GLY LEU GLY ILE ALA VAL VAL SER \ SEQRES 9 H 129 THR SER LYS GLY VAL MET THR ASP ARG ALA ALA ARG GLN \ SEQRES 10 H 129 ALA GLY LEU GLY GLY GLU ILE ILE CYS TYR VAL ALA \ SEQRES 1 I 127 ASN GLN TYR TYR GLY THR GLY ARG ARG LYS SER SER ALA \ SEQRES 2 I 127 ALA ARG VAL PHE ILE LYS PRO GLY ASN GLY LYS ILE VAL \ SEQRES 3 I 127 ILE ASN GLN ARG SER LEU GLU GLN TYR PHE GLY ARG GLU \ SEQRES 4 I 127 THR ALA ARG MET VAL VAL ARG GLN PRO LEU GLU LEU VAL \ SEQRES 5 I 127 ASP MET VAL GLU LYS LEU ASP LEU TYR ILE THR VAL LYS \ SEQRES 6 I 127 GLY GLY GLY ILE SER GLY GLN ALA GLY ALA ILE ARG HIS \ SEQRES 7 I 127 GLY ILE THR ARG ALA LEU MET GLU TYR ASP GLU SER LEU \ SEQRES 8 I 127 ARG SER GLU LEU ARG LYS ALA GLY PHE VAL THR ARG ASP \ SEQRES 9 I 127 ALA ARG GLN VAL GLU ARG LYS LYS VAL GLY LEU ARG LYS \ SEQRES 10 I 127 ALA ARG ARG ARG PRO GLN PHE SER LYS ARG \ SEQRES 1 K 117 ARG LYS GLN VAL SER ASP GLY VAL ALA HIS ILE HIS ALA \ SEQRES 2 K 117 SER PHE ASN ASN THR ILE VAL THR ILE THR ASP ARG GLN \ SEQRES 3 K 117 GLY ASN ALA LEU GLY TRP ALA THR ALA GLY GLY SER GLY \ SEQRES 4 K 117 PHE ARG GLY SER ARG LYS SER THR PRO PHE ALA ALA GLN \ SEQRES 5 K 117 VAL ALA ALA GLU ARG CYS ALA ASP ALA VAL LYS GLU TYR \ SEQRES 6 K 117 GLY ILE LYS ASN LEU GLU VAL MET VAL LYS GLY PRO GLY \ SEQRES 7 K 117 PRO GLY ARG GLU SER THR ILE ARG ALA LEU ASN ALA ALA \ SEQRES 8 K 117 GLY PHE ARG ILE THR ASN ILE THR ASP VAL THR PRO ILE \ SEQRES 9 K 117 PRO HIS ASN GLY CYS ARG PRO PRO LYS LYS ARG ARG VAL \ SEQRES 1 L 123 ALA THR VAL ASN GLN LEU VAL ARG LYS PRO ARG ALA ARG \ SEQRES 2 L 123 LYS VAL ALA LYS SER ASN VAL PRO ALA LEU GLU ALA CYS \ SEQRES 3 L 123 PRO GLN LYS ARG GLY VAL CYS THR ARG VAL TYR THR THR \ SEQRES 4 L 123 THR PRO LYS LYS PRO ASN SER ALA LEU ARG LYS VAL CYS \ SEQRES 5 L 123 ARG VAL ARG LEU THR ASN GLY PHE GLU VAL THR SER TYR \ SEQRES 6 L 123 ILE GLY GLY GLU GLY HIS ASN LEU GLN GLU HIS SER VAL \ SEQRES 7 L 123 ILE LEU ILE ARG GLY GLY ARG VAL LYS ASP LEU PRO GLY \ SEQRES 8 L 123 VAL ARG TYR HIS THR VAL ARG GLY ALA LEU ASP CYS SER \ SEQRES 9 L 123 GLY VAL LYS ASP ARG LYS GLN ALA ARG SER LYS TYR GLY \ SEQRES 10 L 123 VAL LYS ARG PRO LYS ALA \ SEQRES 1 O 88 SER LEU SER THR GLU ALA THR ALA LYS ILE VAL SER GLU \ SEQRES 2 O 88 PHE GLY ARG ASP ALA ASN ASP THR GLY SER THR GLU VAL \ SEQRES 3 O 88 GLN VAL ALA LEU LEU THR ALA GLN ILE ASN HIS LEU GLN \ SEQRES 4 O 88 GLY HIS PHE ALA GLU HIS LYS LYS ASP HIS HIS SER ARG \ SEQRES 5 O 88 ARG GLY LEU LEU ARG MET VAL SER GLN ARG ARG LYS LEU \ SEQRES 6 O 88 LEU ASP TYR LEU LYS ARG LYS ASP VAL ALA ARG TYR THR \ SEQRES 7 O 88 ARG LEU ILE GLU ARG LEU GLY LEU ARG ARG \ SEQRES 1 P 82 MET VAL THR ILE ARG LEU ALA ARG HIS GLY ALA LYS LYS \ SEQRES 2 P 82 ARG PRO PHE TYR GLN VAL VAL VAL ALA ASP SER ARG ASN \ SEQRES 3 P 82 ALA ARG ASN GLY ARG PHE ILE GLU ARG VAL GLY PHE PHE \ SEQRES 4 P 82 ASN PRO ILE ALA SER GLU LYS GLU GLU GLY THR ARG LEU \ SEQRES 5 P 82 ASP LEU ASP ARG ILE ALA HIS TRP VAL GLY GLN GLY ALA \ SEQRES 6 P 82 THR ILE SER ASP ARG VAL ALA ALA LEU ILE LYS GLU VAL \ SEQRES 7 P 82 ASN LYS ALA ALA \ SEQRES 1 Q 80 LYS ILE ARG THR LEU GLN GLY ARG VAL VAL SER ASP LYS \ SEQRES 2 Q 80 MET GLU LYS SER ILE VAL VAL ALA ILE GLU ARG PHE VAL \ SEQRES 3 Q 80 LYS HIS PRO ILE TYR GLY LYS PHE ILE LYS ARG THR THR \ SEQRES 4 Q 80 LYS LEU HIS VAL HIS ASP GLU ASN ASN GLU CYS GLY ILE \ SEQRES 5 Q 80 GLY ASP VAL VAL GLU ILE ARG GLU CYS ARG PRO LEU SER \ SEQRES 6 Q 80 LYS THR LYS SER TRP THR LEU VAL ARG VAL VAL GLU LYS \ SEQRES 7 Q 80 ALA VAL \ SEQRES 1 R 55 GLU ILE ASP TYR LYS ASP ILE ALA THR LEU LYS ASN TYR \ SEQRES 2 R 55 ILE THR GLU SER GLY LYS ILE VAL PRO SER ARG ILE THR \ SEQRES 3 R 55 GLY THR ARG ALA LYS TYR GLN ARG GLN LEU ALA ARG ALA \ SEQRES 4 R 55 ILE LYS ARG ALA ARG TYR LEU SER LEU LEU PRO TYR THR \ SEQRES 5 R 55 ASP ARG HIS \ CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 1.000000 0.000000 0.000000 0.00000 \ SCALE2 0.000000 1.000000 0.000000 0.00000 \ SCALE3 0.000000 0.000000 1.000000 0.00000 \ TER 541 U A 627 \ TER 692 LYS E 150 \ TER 793 SER F 100 \ TER 923 ALA H 129 \ TER 1051 ARG I 127 \ TER 1169 VAL K 117 \ ATOM 1170 CA ALA L 1 -30.529 60.690 32.326 1.00 24.93 C \ ATOM 1171 CA THR L 2 -29.169 63.518 34.477 1.00 26.54 C \ ATOM 1172 CA VAL L 3 -27.271 66.686 33.535 1.00 66.45 C \ ATOM 1173 CA ASN L 4 -24.083 65.093 34.864 1.00 58.59 C \ ATOM 1174 CA GLN L 5 -24.718 61.820 33.034 1.00 68.33 C \ ATOM 1175 CA LEU L 6 -25.428 63.964 29.978 1.00 20.31 C \ ATOM 1176 CA VAL L 7 -22.388 66.242 30.227 1.00 45.58 C \ ATOM 1177 CA ARG L 8 -20.289 63.078 29.995 1.00 4.37 C \ ATOM 1178 CA LYS L 9 -22.126 60.983 27.392 1.00 95.57 C \ ATOM 1179 CA PRO L 10 -24.849 63.225 25.851 1.00 77.73 C \ ATOM 1180 CA ARG L 11 -27.590 62.086 23.470 1.00 33.50 C \ ATOM 1181 CA ALA L 12 -26.246 60.121 20.499 1.00 50.58 C \ ATOM 1182 CA ARG L 13 -27.646 60.681 17.004 1.00 3.79 C \ ATOM 1183 CA LYS L 14 -28.484 57.891 14.550 1.00 92.42 C \ ATOM 1184 CA VAL L 15 -26.750 57.416 11.189 1.00 77.45 C \ ATOM 1185 CA ALA L 16 -29.757 57.346 8.854 1.00 1.32 C \ ATOM 1186 CA LYS L 17 -29.379 54.263 6.663 1.00 80.35 C \ ATOM 1187 CA SER L 18 -30.499 55.138 3.131 1.00 66.34 C \ ATOM 1188 CA ASN L 19 -31.621 51.867 1.552 1.00 58.77 C \ ATOM 1189 CA VAL L 20 -29.988 52.453 -1.844 1.00 42.74 C \ ATOM 1190 CA PRO L 21 -26.665 51.196 -3.272 1.00 0.58 C \ ATOM 1191 CA ALA L 22 -26.862 53.609 -6.205 1.00 30.13 C \ ATOM 1192 CA LEU L 23 -26.492 56.444 -3.698 1.00 99.64 C \ ATOM 1193 CA GLU L 24 -24.082 59.180 -4.763 1.00 2.18 C \ ATOM 1194 CA ALA L 25 -27.053 61.374 -3.835 1.00 73.24 C \ ATOM 1195 CA CYS L 26 -28.600 61.177 -7.301 1.00 51.40 C \ ATOM 1196 CA PRO L 27 -32.169 61.168 -8.696 1.00 49.43 C \ ATOM 1197 CA GLN L 28 -31.172 58.385 -11.091 1.00 33.85 C \ ATOM 1198 CA LYS L 29 -28.217 56.391 -12.439 1.00 45.28 C \ ATOM 1199 CA ARG L 30 -27.332 54.922 -15.841 1.00 38.13 C \ ATOM 1200 CA GLY L 31 -26.963 51.186 -16.341 1.00 81.96 C \ ATOM 1201 CA VAL L 32 -26.385 48.533 -18.998 1.00 58.93 C \ ATOM 1202 CA CYS L 33 -28.758 45.687 -18.100 1.00 33.89 C \ ATOM 1203 CA THR L 34 -27.198 42.265 -17.488 1.00 69.98 C \ ATOM 1204 CA ARG L 35 -30.331 40.284 -18.344 1.00 3.27 C \ ATOM 1205 CA VAL L 36 -34.131 40.248 -18.171 1.00 39.97 C \ ATOM 1206 CA TYR L 37 -35.717 38.107 -15.450 1.00 59.80 C \ ATOM 1207 CA THR L 38 -39.287 37.187 -14.537 1.00 49.67 C \ ATOM 1208 CA THR L 39 -38.989 36.202 -10.869 1.00 75.30 C \ ATOM 1209 CA THR L 40 -42.022 35.373 -8.732 1.00 29.97 C \ ATOM 1210 CA PRO L 41 -43.424 37.592 -5.923 1.00 65.56 C \ ATOM 1211 CA LYS L 42 -43.712 36.840 -2.203 1.00 81.28 C \ ATOM 1212 CA LYS L 43 -46.195 34.586 -0.411 1.00 2.41 C \ ATOM 1213 CA PRO L 44 -49.205 36.963 -0.338 1.00 54.26 C \ ATOM 1214 CA ASN L 45 -49.161 37.701 -4.076 1.00 41.25 C \ ATOM 1215 CA SER L 46 -48.685 35.707 -7.273 1.00 55.26 C \ ATOM 1216 CA ALA L 47 -48.015 36.319 -10.980 1.00 72.81 C \ ATOM 1217 CA LEU L 48 -44.483 36.684 -12.348 1.00 79.09 C \ ATOM 1218 CA ARG L 49 -43.130 40.240 -12.573 1.00 49.35 C \ ATOM 1219 CA LYS L 50 -40.331 41.558 -14.789 1.00 28.53 C \ ATOM 1220 CA VAL L 51 -36.928 42.606 -13.442 1.00 38.30 C \ ATOM 1221 CA CYS L 52 -33.315 42.904 -14.598 1.00 55.36 C \ ATOM 1222 CA ARG L 53 -29.785 43.155 -13.208 1.00 66.02 C \ ATOM 1223 CA VAL L 54 -28.155 46.505 -13.961 1.00 19.59 C \ ATOM 1224 CA ARG L 55 -24.448 47.332 -14.172 1.00 80.83 C \ ATOM 1225 CA LEU L 56 -24.664 50.912 -12.881 1.00 80.90 C \ ATOM 1226 CA THR L 57 -22.084 53.406 -14.146 1.00 86.11 C \ ATOM 1227 CA ASN L 58 -20.440 53.250 -10.719 1.00 37.17 C \ ATOM 1228 CA GLY L 59 -19.927 49.507 -11.066 1.00 30.14 C \ ATOM 1229 CA PHE L 60 -22.468 48.829 -8.317 1.00 36.62 C \ ATOM 1230 CA GLU L 61 -24.593 46.103 -9.890 1.00 47.70 C \ ATOM 1231 CA VAL L 62 -28.253 45.772 -8.913 1.00 27.96 C \ ATOM 1232 CA THR L 63 -31.586 44.523 -10.243 1.00 43.74 C \ ATOM 1233 CA SER L 64 -34.150 47.171 -11.175 1.00 25.57 C \ ATOM 1234 CA TYR L 65 -37.901 46.792 -11.647 1.00 40.22 C \ ATOM 1235 CA ILE L 66 -39.332 47.286 -15.136 1.00 82.22 C \ ATOM 1236 CA GLY L 67 -42.870 48.410 -14.346 1.00 36.21 C \ ATOM 1237 CA GLY L 68 -45.475 49.010 -17.023 1.00 71.90 C \ ATOM 1238 CA GLU L 69 -47.899 46.860 -19.009 1.00 5.52 C \ ATOM 1239 CA GLY L 70 -45.347 46.023 -21.683 1.00 40.41 C \ ATOM 1240 CA HIS L 71 -41.636 45.321 -21.312 1.00 8.93 C \ ATOM 1241 CA ASN L 72 -39.166 45.848 -24.163 1.00 85.58 C \ ATOM 1242 CA LEU L 73 -35.625 45.706 -22.792 1.00 68.58 C \ ATOM 1243 CA GLN L 74 -32.701 43.645 -24.072 1.00 0.21 C \ ATOM 1244 CA GLU L 75 -29.726 41.880 -22.481 1.00 91.19 C \ ATOM 1245 CA HIS L 76 -27.568 44.857 -23.479 1.00 58.07 C \ ATOM 1246 CA SER L 77 -29.985 47.788 -23.736 1.00 56.98 C \ ATOM 1247 CA VAL L 78 -29.091 50.845 -21.656 1.00 38.35 C \ ATOM 1248 CA ILE L 79 -31.675 51.854 -19.053 1.00 37.60 C \ ATOM 1249 CA LEU L 80 -31.826 54.442 -16.267 1.00 23.30 C \ ATOM 1250 CA ILE L 81 -32.375 53.445 -12.630 1.00 35.30 C \ ATOM 1251 CA ARG L 82 -34.551 55.706 -10.480 1.00 41.58 C \ ATOM 1252 CA GLY L 83 -35.427 54.179 -7.119 1.00 7.06 C \ ATOM 1253 CA GLY L 84 -38.549 53.253 -5.185 1.00 51.84 C \ ATOM 1254 CA ARG L 85 -38.163 49.680 -3.969 1.00 69.42 C \ ATOM 1255 CA VAL L 86 -40.704 46.904 -4.495 1.00 29.54 C \ ATOM 1256 CA LYS L 87 -42.173 44.607 -1.841 1.00 58.21 C \ ATOM 1257 CA ASP L 88 -43.189 41.432 -3.686 1.00 19.51 C \ ATOM 1258 CA LEU L 89 -39.701 41.531 -5.215 1.00 45.34 C \ ATOM 1259 CA PRO L 90 -36.949 41.382 -2.550 1.00 41.70 C \ ATOM 1260 CA GLY L 91 -33.521 42.832 -3.275 1.00 77.87 C \ ATOM 1261 CA VAL L 92 -35.269 44.674 -6.099 1.00 45.76 C \ ATOM 1262 CA ARG L 93 -35.237 48.177 -4.623 1.00 72.19 C \ ATOM 1263 CA TYR L 94 -35.095 50.045 -7.939 1.00 62.60 C \ ATOM 1264 CA HIS L 95 -37.061 50.743 -11.117 1.00 95.94 C \ ATOM 1265 CA THR L 96 -35.955 51.465 -14.688 1.00 17.87 C \ ATOM 1266 CA VAL L 97 -37.032 54.878 -15.969 1.00 55.63 C \ ATOM 1267 CA ARG L 98 -39.795 54.564 -18.557 1.00 26.85 C \ ATOM 1268 CA GLY L 99 -38.979 56.467 -21.729 1.00 79.90 C \ ATOM 1269 CA ALA L 100 -35.286 57.247 -21.296 1.00 35.83 C \ ATOM 1270 CA LEU L 101 -31.899 56.196 -22.682 1.00 77.78 C \ ATOM 1271 CA ASP L 102 -31.877 53.040 -24.811 1.00 97.33 C \ ATOM 1272 CA CYS L 103 -35.047 51.712 -23.177 1.00 78.37 C \ ATOM 1273 CA SER L 104 -38.641 51.896 -24.415 1.00 54.98 C \ ATOM 1274 CA GLY L 105 -41.914 52.805 -22.744 1.00 53.31 C \ ATOM 1275 CA VAL L 106 -45.423 51.475 -22.160 1.00 88.26 C \ ATOM 1276 CA LYS L 107 -47.552 51.368 -25.305 1.00 51.26 C \ ATOM 1277 CA ASP L 108 -51.158 52.460 -25.866 1.00 67.64 C \ ATOM 1278 CA ARG L 109 -51.244 53.944 -22.352 1.00 81.39 C \ ATOM 1279 CA LYS L 110 -53.503 57.000 -22.179 1.00 87.78 C \ ATOM 1280 CA GLN L 111 -53.648 57.538 -18.414 1.00 66.10 C \ ATOM 1281 CA ALA L 112 -50.781 58.838 -16.282 1.00 55.75 C \ ATOM 1282 CA ARG L 113 -48.691 59.645 -19.358 1.00 51.12 C \ ATOM 1283 CA SER L 114 -45.979 61.368 -17.308 1.00 24.66 C \ ATOM 1284 CA LYS L 115 -45.150 58.041 -15.697 1.00 62.73 C \ ATOM 1285 CA TYR L 116 -44.335 55.237 -18.136 1.00 54.66 C \ ATOM 1286 CA GLY L 117 -43.515 55.836 -21.798 1.00 3.96 C \ ATOM 1287 CA VAL L 118 -46.163 58.004 -23.466 1.00 70.25 C \ ATOM 1288 CA LYS L 119 -46.383 61.608 -24.671 1.00 98.32 C \ ATOM 1289 CA ARG L 120 -49.685 62.994 -26.003 1.00 94.37 C \ ATOM 1290 CA PRO L 121 -51.604 60.179 -27.786 1.00 88.12 C \ ATOM 1291 CA LYS L 122 -53.016 60.036 -31.316 1.00 1.13 C \ ATOM 1292 CA ALA L 123 -55.143 63.027 -30.277 1.00 4.73 C \ TER 1293 ALA L 123 \ TER 1382 ARG O 88 \ TER 1465 ALA P 82 \ TER 1546 VAL Q 80 \ TER 1602 HIS R 55 \ MASTER 126 0 0 0 0 0 0 6 1591 11 0 127 \ END \ \ ""","3iy8L3") cmd.hide("everything") cmd.color("grey70") rebuild cmd.select("rainbow","resi 28-32 + resi 48-57 + resi 59-66 + resi 77-84") cmd.spectrum(expression="count", selection="resi 28-32 + resi 48-57 + resi 59-66 + resi 77-84") cmd.show_as("cartoon") cmd.zoom("3iy8L3",animate=-1) cmd.delete("rainbow")