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set ribbon_radius = 0.5 set orthoscopic = 1 bg_color white set opaque_background, off set cartoon_fancy_sheets, 1 set cartoon_fancy_helices, 1 set cartoon_smooth_loops,1 set cartoon_rect_length, 1.2 set cartoon_rect_width, 0.3 set cartoon_dumbbell_length, 1.2 set cartoon_dumbbell_radius, 0.1 set cartoon_dumbbell_width, 0.1 cmd.read_pdbstr("""\ HEADER RIBOSOMAL PROTEIN 23-JUL-10 3IYX \ TITLE COORDINATES OF THE B1B BRIDGE-FORMING PROTEIN STRUCTURES FITTED INTO \ TITLE 2 THE CRYO-EM MAP OF E.COLI 70S RIBOSOME (EMD-1056) \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S13; \ COMPND 3 CHAIN: M; \ COMPND 4 MOL_ID: 2; \ COMPND 5 MOLECULE: 50S RIBOSOMAL PROTEIN L5; \ COMPND 6 CHAIN: F; \ COMPND 7 MOL_ID: 3; \ COMPND 8 MOLECULE: 50S RIBOSOMAL PROTEIN L31; \ COMPND 9 CHAIN: A \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; \ SOURCE 3 ORGANISM_TAXID: 701177; \ SOURCE 4 STRAIN: O55:H7; \ SOURCE 5 MOL_ID: 2; \ SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; \ SOURCE 7 ORGANISM_TAXID: 701177; \ SOURCE 8 STRAIN: O55:H7; \ SOURCE 9 MOL_ID: 3; \ SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; \ SOURCE 11 ORGANISM_TAXID: 701177; \ SOURCE 12 STRAIN: O55:H7 \ KEYWDS RIBOSOMAL INTERSUBUNIT BRIDGES, B1B-BRIDGE, RATCHET-LIKE MOTION, \ KEYWDS 2 RIBOSOMAL PROTEIN L31, RIBOSOMAL PROTEIN \ EXPDTA ELECTRON MICROSCOPY \ MDLTYP CA ATOMS ONLY, CHAIN M, F, A \ AUTHOR M.SHASMAL,B.CHAKRABORTY,J.SENGUPTA \ REVDAT 4 21-FEB-24 3IYX 1 REMARK \ REVDAT 3 18-DEC-19 3IYX 1 CRYST1 SCALE \ REVDAT 2 18-JUL-18 3IYX 1 REMARK \ REVDAT 1 01-SEP-10 3IYX 0 \ JRNL AUTH M.SHASMAL,B.CHAKRABORTY,J.SENGUPTA \ JRNL TITL INTRINSIC MOLECULAR PROPERTIES OF THE PROTEIN-PROTEIN BRIDGE \ JRNL TITL 2 FACILITATE RATCHET-LIKE MOTION OF THE RIBOSOME \ JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 399 192 2010 \ JRNL REFN ISSN 0006-291X \ JRNL PMID 20643101 \ JRNL DOI 10.1016/J.BBRC.2010.07.053 \ REMARK 2 \ REMARK 2 RESOLUTION. 9.00 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 SOFTWARE PACKAGES : SPIDER \ REMARK 3 RECONSTRUCTION SCHEMA : NULL \ REMARK 3 \ REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT \ REMARK 3 PDB ENTRY : 2I2P \ REMARK 3 REFINEMENT SPACE : NULL \ REMARK 3 REFINEMENT PROTOCOL : NULL \ REMARK 3 REFINEMENT TARGET : NULL \ REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL \ REMARK 3 \ REMARK 3 FITTING PROCEDURE : NULL \ REMARK 3 \ REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS \ REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 2.820 \ REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL \ REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 9.000 \ REMARK 3 NUMBER OF PARTICLES : 52181 \ REMARK 3 CTF CORRECTION METHOD : NULL \ REMARK 3 \ REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: TMV \ REMARK 3 \ REMARK 3 OTHER DETAILS: NULL \ REMARK 4 \ REMARK 4 3IYX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-10. \ REMARK 100 THE DEPOSITION ID IS D_1000160039. \ REMARK 245 \ REMARK 245 EXPERIMENTAL DETAILS \ REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE \ REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) \ REMARK 245 \ REMARK 245 ELECTRON MICROSCOPE SAMPLE \ REMARK 245 SAMPLE TYPE : PARTICLE \ REMARK 245 PARTICLE TYPE : POINT \ REMARK 245 NAME OF SAMPLE : E.COLI 70S RIBOSOME \ REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL \ REMARK 245 SAMPLE SUPPORT DETAILS : QUANTIFOIL HOLLEY CARBON FILM \ REMARK 245 GRIDS \ REMARK 245 SAMPLE VITRIFICATION DETAILS : RAPID-FREEZING IN LIQUID ETHANE \ REMARK 245 SAMPLE BUFFER : POLYMIX BUFFER \ REMARK 245 PH : 7.50 \ REMARK 245 SAMPLE DETAILS : NULL \ REMARK 245 \ REMARK 245 DATA ACQUISITION \ REMARK 245 DATE OF EXPERIMENT : NULL \ REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL \ REMARK 245 TEMPERATURE (KELVIN) : 93.00 \ REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 \ REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM \ REMARK 245 MINIMUM DEFOCUS (NM) : 2000.00 \ REMARK 245 MAXIMUM DEFOCUS (NM) : 4000.00 \ REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 \ REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 \ REMARK 245 NOMINAL CS : 2.00 \ REMARK 245 IMAGING MODE : BRIGHT FIELD \ REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2000.00 \ REMARK 245 ILLUMINATION MODE : FLOOD BEAM \ REMARK 245 NOMINAL MAGNIFICATION : 50000 \ REMARK 245 CALIBRATED MAGNIFICATION : 49696 \ REMARK 245 SOURCE : FIELD EMISSION GUN \ REMARK 245 ACCELERATION VOLTAGE (KV) : 200 \ REMARK 245 IMAGING DETAILS : NULL \ REMARK 247 \ REMARK 247 ELECTRON MICROSCOPY \ REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON \ REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE \ REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES \ REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION \ REMARK 247 OF THE STRUCTURE FACTORS. \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, F, A \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 MET M 0 \ REMARK 465 ILE M 115 \ REMARK 465 LYS M 116 \ REMARK 465 LYS M 117 \ REMARK 465 MET F 0 \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: 2I2P RELATED DB: PDB \ REMARK 900 CRYSTAL STRUCTURE OF 30S SUBUNIT OF E. COLI RIBOSOME WITH MESSENGER \ REMARK 900 RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. CHAIN M: SMALL \ REMARK 900 SUBUNIT PROTEIN S13 \ REMARK 900 RELATED ID: 2I2T RELATED DB: PDB \ REMARK 900 CRYSTAL STRUCTURE OF 50S SUBUNIT OF E. COLI RIBOSOME WITH MESSENGER \ REMARK 900 RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. CHAIN F: LARGE \ REMARK 900 SUBUNIT PROTEIN L5 \ REMARK 900 RELATED ID: 2WRJ RELATED DB: PDB \ REMARK 900 X-RAY STRUCTURE OF THE T. THERMOPHILUS 70S RIBOSOME (CHAIN 4 WAS \ REMARK 900 USED AS TEMPLATE TO BUILD HOMOLOGY MODEL OF E.COLI L31) \ REMARK 900 RELATED ID: EMD-1056 RELATED DB: EMDB \ REMARK 900 CRYO-EM MAP OF E. COLI 70S-TRNAFMET-MF-TRNAPHE COMPLEX \ DBREF 3IYX M 0 117 UNP D3QTD7 D3QTD7_ECOCB 1 118 \ DBREF 3IYX F 0 178 UNP D3QTE7 D3QTE7_ECOCB 1 179 \ DBREF 3IYX A 1 70 UNP D3QYD6 D3QYD6_ECOCB 1 70 \ SEQRES 1 M 118 MET ALA ARG ILE ALA GLY ILE ASN ILE PRO ASP HIS LYS \ SEQRES 2 M 118 HIS ALA VAL ILE ALA LEU THR SER ILE TYR GLY VAL GLY \ SEQRES 3 M 118 LYS THR ARG SER LYS ALA ILE LEU ALA ALA ALA GLY ILE \ SEQRES 4 M 118 ALA GLU ASP VAL LYS ILE SER GLU LEU SER GLU GLY GLN \ SEQRES 5 M 118 ILE ASP THR LEU ARG ASP GLU VAL ALA LYS PHE VAL VAL \ SEQRES 6 M 118 GLU GLY ASP LEU ARG ARG GLU ILE SER MET SER ILE LYS \ SEQRES 7 M 118 ARG LEU MET ASP LEU GLY CYS TYR ARG GLY LEU ARG HIS \ SEQRES 8 M 118 ARG ARG GLY LEU PRO VAL ARG GLY GLN ARG THR LYS THR \ SEQRES 9 M 118 ASN ALA ARG THR ARG LYS GLY PRO ARG LYS PRO ILE LYS \ SEQRES 10 M 118 LYS \ SEQRES 1 F 179 MET ALA LYS LEU HIS ASP TYR TYR LYS ASP GLU VAL VAL \ SEQRES 2 F 179 LYS LYS LEU MET THR GLU PHE ASN TYR ASN SER VAL MET \ SEQRES 3 F 179 GLN VAL PRO ARG VAL GLU LYS ILE THR LEU ASN MET GLY \ SEQRES 4 F 179 VAL GLY GLU ALA ILE ALA ASP LYS LYS LEU LEU ASP ASN \ SEQRES 5 F 179 ALA ALA ALA ASP LEU ALA ALA ILE SER GLY GLN LYS PRO \ SEQRES 6 F 179 LEU ILE THR LYS ALA ARG LYS SER VAL ALA GLY PHE LYS \ SEQRES 7 F 179 ILE ARG GLN GLY TYR PRO ILE GLY CYS LYS VAL THR LEU \ SEQRES 8 F 179 ARG GLY GLU ARG MET TRP GLU PHE PHE GLU ARG LEU ILE \ SEQRES 9 F 179 THR ILE ALA VAL PRO ARG ILE ARG ASP PHE ARG GLY LEU \ SEQRES 10 F 179 SER ALA LYS SER PHE ASP GLY ARG GLY ASN TYR SER MET \ SEQRES 11 F 179 GLY VAL ARG GLU GLN ILE ILE PHE PRO GLU ILE ASP TYR \ SEQRES 12 F 179 ASP LYS VAL ASP ARG VAL ARG GLY LEU ASP ILE THR ILE \ SEQRES 13 F 179 THR THR THR ALA LYS SER ASP GLU GLU GLY ARG ALA LEU \ SEQRES 14 F 179 LEU ALA ALA PHE ASP PHE PRO PHE ARG LYS \ SEQRES 1 A 70 MET LYS LYS ASP ILE HIS PRO LYS TYR GLU GLU ILE THR \ SEQRES 2 A 70 ALA SER CYS SER CYS GLY ASN VAL MET LYS ILE ARG SER \ SEQRES 3 A 70 THR VAL GLY HIS ASP LEU ASN LEU ASP VAL CYS SER LYS \ SEQRES 4 A 70 CYS HIS PRO PHE PHE THR GLY LYS GLN ARG ASP VAL ALA \ SEQRES 5 A 70 THR GLY GLY ARG VAL ASP ARG PHE ASN LYS ARG PHE ASN \ SEQRES 6 A 70 ILE PRO GLY SER LYS \ CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 1 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 1.000000 0.000000 0.000000 0.00000 \ SCALE2 0.000000 1.000000 0.000000 0.00000 \ SCALE3 0.000000 0.000000 1.000000 0.00000 \ ATOM 1 CA ALA M 1 -87.121 -58.099 -9.908 1.00140.19 C \ ATOM 2 CA ARG M 2 -85.394 -54.952 -8.653 1.00111.32 C \ ATOM 3 CA ILE M 3 -88.815 -53.303 -8.290 1.00128.88 C \ ATOM 4 CA ALA M 4 -88.431 -52.139 -11.899 1.00 94.14 C \ ATOM 5 CA GLY M 5 -84.744 -52.471 -12.722 1.00 93.34 C \ ATOM 6 CA ILE M 6 -81.589 -52.493 -10.578 1.00 90.70 C \ ATOM 7 CA ASN M 7 -81.485 -51.571 -6.875 1.00127.71 C \ ATOM 8 CA ILE M 8 -84.333 -52.923 -4.750 1.00161.61 C \ ATOM 9 CA PRO M 9 -85.182 -50.296 -2.100 1.00109.20 C \ ATOM 10 CA ASP M 10 -87.136 -52.382 0.413 1.00157.28 C \ ATOM 11 CA HIS M 11 -88.160 -52.087 4.066 1.00123.23 C \ ATOM 12 CA LYS M 12 -89.834 -48.706 3.556 1.00140.95 C \ ATOM 13 CA HIS M 13 -93.280 -47.281 2.789 1.00110.18 C \ ATOM 14 CA ALA M 14 -94.552 -48.169 -0.685 1.00 89.07 C \ ATOM 15 CA VAL M 15 -94.557 -44.675 -2.206 1.00117.22 C \ ATOM 16 CA ILE M 16 -91.692 -43.005 -0.332 1.00 90.92 C \ ATOM 17 CA ALA M 17 -89.602 -46.064 -1.207 1.00 93.33 C \ ATOM 18 CA LEU M 18 -90.827 -46.272 -4.802 1.00123.04 C \ ATOM 19 CA THR M 19 -89.535 -42.707 -5.107 1.00110.45 C \ ATOM 20 CA SER M 20 -86.043 -44.206 -4.985 1.00101.09 C \ ATOM 21 CA ILE M 21 -86.868 -45.428 -8.488 1.00103.64 C \ ATOM 22 CA TYR M 22 -85.012 -43.060 -10.816 1.00148.01 C \ ATOM 23 CA GLY M 23 -87.934 -41.686 -12.803 1.00 80.18 C \ ATOM 24 CA VAL M 24 -90.931 -41.480 -10.472 1.00136.84 C \ ATOM 25 CA GLY M 25 -92.177 -38.742 -8.160 1.00 82.23 C \ ATOM 26 CA LYS M 26 -94.804 -38.568 -5.415 1.00 96.31 C \ ATOM 27 CA THR M 27 -97.333 -38.636 -8.264 1.00115.26 C \ ATOM 28 CA ARG M 28 -96.431 -41.425 -10.697 1.00100.92 C \ ATOM 29 CA SER M 29 -95.512 -43.429 -7.589 1.00 75.78 C \ ATOM 30 CA LYS M 30 -98.896 -43.517 -5.849 1.00 93.87 C \ ATOM 31 CA ALA M 31 -100.876 -43.589 -9.102 1.00 74.72 C \ ATOM 32 CA ILE M 32 -99.497 -46.970 -10.174 1.00121.48 C \ ATOM 33 CA LEU M 33 -99.786 -48.346 -6.632 1.00130.47 C \ ATOM 34 CA ALA M 34 -103.565 -47.964 -6.684 1.00145.50 C \ ATOM 35 CA ALA M 35 -103.647 -49.725 -10.054 1.00 70.04 C \ ATOM 36 CA ALA M 36 -102.239 -52.726 -8.187 1.00113.86 C \ ATOM 37 CA GLY M 37 -104.243 -52.323 -4.998 1.00103.47 C \ ATOM 38 CA ILE M 38 -100.945 -51.967 -3.149 1.00139.35 C \ ATOM 39 CA ALA M 39 -100.989 -49.854 0.014 1.00166.89 C \ ATOM 40 CA GLU M 40 -99.073 -46.627 -0.628 1.00180.00 C \ ATOM 41 CA ASP M 41 -97.843 -47.007 2.950 1.00107.31 C \ ATOM 42 CA VAL M 42 -96.541 -49.836 5.154 1.00120.45 C \ ATOM 43 CA LYS M 43 -93.184 -51.582 4.789 1.00131.99 C \ ATOM 44 CA ILE M 44 -92.670 -54.032 1.930 1.00117.06 C \ ATOM 45 CA SER M 45 -92.443 -56.671 4.657 1.00161.20 C \ ATOM 46 CA GLU M 46 -96.214 -57.059 4.827 1.00139.35 C \ ATOM 47 CA LEU M 47 -96.183 -57.135 1.020 1.00162.15 C \ ATOM 48 CA SER M 48 -95.698 -60.255 -1.095 1.00157.18 C \ ATOM 49 CA GLU M 49 -94.361 -61.334 -4.489 1.00133.20 C \ ATOM 50 CA GLY M 50 -97.573 -60.435 -6.286 1.00136.69 C \ ATOM 51 CA GLN M 51 -97.017 -57.064 -4.630 1.00136.91 C \ ATOM 52 CA ILE M 52 -93.862 -56.403 -6.659 1.00126.33 C \ ATOM 53 CA ASP M 53 -93.631 -58.539 -9.809 1.00 99.96 C \ ATOM 54 CA THR M 54 -96.957 -57.150 -11.022 1.00155.21 C \ ATOM 55 CA LEU M 55 -95.793 -53.589 -10.377 1.00114.02 C \ ATOM 56 CA ARG M 56 -93.368 -54.192 -13.241 1.00117.84 C \ ATOM 57 CA ASP M 57 -95.893 -55.029 -15.964 1.00180.00 C \ ATOM 58 CA GLU M 58 -97.038 -51.415 -15.691 1.00140.00 C \ ATOM 59 CA VAL M 59 -93.696 -49.843 -14.774 1.00100.50 C \ ATOM 60 CA ALA M 60 -92.279 -51.119 -18.067 1.00121.81 C \ ATOM 61 CA LYS M 61 -95.109 -49.424 -19.957 1.00180.00 C \ ATOM 62 CA PHE M 62 -93.263 -46.233 -19.034 1.00165.21 C \ ATOM 63 CA VAL M 63 -89.663 -45.296 -19.839 1.00130.92 C \ ATOM 64 CA VAL M 64 -87.734 -45.070 -16.568 1.00129.94 C \ ATOM 65 CA GLU M 65 -84.271 -45.344 -14.985 1.00142.37 C \ ATOM 66 CA GLY M 66 -82.420 -46.872 -17.924 1.00 85.57 C \ ATOM 67 CA ASP M 67 -83.590 -45.261 -21.163 1.00124.02 C \ ATOM 68 CA LEU M 68 -84.971 -42.267 -19.263 1.00113.40 C \ ATOM 69 CA ARG M 69 -81.641 -40.837 -18.100 1.00157.13 C \ ATOM 70 CA ARG M 70 -80.250 -41.710 -21.530 1.00148.21 C \ ATOM 71 CA GLU M 71 -83.228 -40.006 -23.159 1.00164.01 C \ ATOM 72 CA ILE M 72 -82.515 -36.811 -21.229 1.00 82.29 C \ ATOM 73 CA SER M 73 -78.745 -37.037 -21.696 1.00147.79 C \ ATOM 74 CA MET M 74 -79.558 -37.074 -25.408 1.00152.38 C \ ATOM 75 CA SER M 75 -82.110 -34.273 -25.122 1.00 98.59 C \ ATOM 76 CA ILE M 76 -79.235 -32.108 -23.909 1.00115.69 C \ ATOM 77 CA LYS M 77 -77.163 -33.151 -26.921 1.00 82.68 C \ ATOM 78 CA ARG M 78 -80.028 -32.587 -29.369 1.00142.57 C \ ATOM 79 CA LEU M 79 -80.178 -29.113 -27.821 1.00178.58 C \ ATOM 80 CA MET M 80 -76.654 -28.176 -28.913 1.00138.72 C \ ATOM 81 CA ASP M 81 -76.017 -29.704 -32.339 1.00120.04 C \ ATOM 82 CA LEU M 82 -77.760 -26.532 -33.498 1.00118.65 C \ ATOM 83 CA GLY M 83 -76.389 -23.011 -33.157 1.00137.58 C \ ATOM 84 CA CYS M 84 -79.523 -21.995 -31.265 1.00 99.46 C \ ATOM 85 CA TYR M 85 -79.340 -20.028 -27.999 1.00129.77 C \ ATOM 86 CA ARG M 86 -81.076 -22.587 -25.774 1.00154.25 C \ ATOM 87 CA GLY M 87 -78.905 -25.269 -27.330 1.00116.85 C \ ATOM 88 CA LEU M 88 -75.723 -23.205 -27.147 1.00101.78 C \ ATOM 89 CA ARG M 89 -76.175 -21.930 -23.589 1.00122.23 C \ ATOM 90 CA HIS M 90 -76.519 -25.606 -22.737 1.00116.80 C \ ATOM 91 CA ARG M 91 -72.791 -26.009 -23.365 1.00126.43 C \ ATOM 92 CA ARG M 92 -70.839 -23.115 -21.870 1.00107.17 C \ ATOM 93 CA GLY M 93 -71.944 -24.537 -18.532 1.00117.84 C \ ATOM 94 CA LEU M 94 -74.103 -21.451 -18.041 1.00 90.95 C \ ATOM 95 CA PRO M 95 -77.855 -21.445 -17.262 1.00 85.21 C \ ATOM 96 CA VAL M 96 -80.430 -21.392 -20.066 1.00136.68 C \ ATOM 97 CA ARG M 97 -83.686 -20.370 -18.377 1.00 90.12 C \ ATOM 98 CA GLY M 98 -83.937 -16.668 -17.584 1.00104.08 C \ ATOM 99 CA GLN M 99 -81.255 -16.129 -14.946 1.00101.91 C \ ATOM 100 CA ARG M 100 -78.850 -13.274 -14.220 1.00 62.98 C \ ATOM 101 CA THR M 101 -75.202 -14.066 -14.938 1.00 82.60 C \ ATOM 102 CA LYS M 102 -73.731 -11.419 -12.631 1.00118.64 C \ ATOM 103 CA THR M 103 -74.903 -12.772 -9.285 1.00103.44 C \ ATOM 104 CA ASN M 104 -76.019 -16.075 -7.764 1.00 96.06 C \ ATOM 105 CA ALA M 105 -75.088 -18.666 -10.392 1.00 85.95 C \ ATOM 106 CA ARG M 106 -73.130 -21.226 -8.380 1.00117.23 C \ ATOM 107 CA THR M 107 -75.454 -24.018 -9.529 1.00120.31 C \ ATOM 108 CA ARG M 108 -75.224 -24.319 -13.311 1.00143.54 C \ ATOM 109 CA LYS M 109 -71.504 -23.537 -13.196 1.00133.17 C \ ATOM 110 CA GLY M 110 -70.697 -24.978 -9.779 1.00106.38 C \ ATOM 111 CA PRO M 111 -68.846 -23.005 -7.064 1.00 93.93 C \ ATOM 112 CA ARG M 112 -66.564 -20.078 -7.908 1.00119.58 C \ ATOM 113 CA LYS M 113 -62.762 -20.101 -7.840 1.00142.33 C \ ATOM 114 CA PRO M 114 -61.686 -17.392 -5.340 1.00180.00 C \ TER 115 PRO M 114 \ TER 294 LYS F 178 \ TER 365 LYS A 70 \ MASTER 120 0 0 0 0 0 0 6 362 3 0 30 \ END \ \ ""","3iyxM1") cmd.hide("everything") cmd.color("grey70") rebuild cmd.select("rainbow","resi 13-22 + resi 25-37 + resi 48-63") cmd.spectrum(expression="count", selection="resi 13-22 + resi 25-37 + resi 48-63") set ribbon_trace,1 cmd.as("ribbon") cmd.zoom("3iyxM1",animate=-1) cmd.delete("rainbow")